Topological spin structures of light, including the Skyrmion, Meron, and bi-Meron, are intriguing optical phenomena that arise from spin–orbit coupling. They have promising potential applications in nano-metrology, data storage, super-resolved imaging and chiral detection. Aside from the electric part of optical spin, of equal importance is the magnetic part, particularly the H-type electromagnetic modes for which the spin topological properties of the field are dominated by the magnetic field. However, their observation and measurement remains absent and faces difficult challenges. Here, we design a unique type of anapole probe to measure specifically the photonic spin structures dominated by magnetic fields. The probe is composed of an Ag-core and Si-shell nanosphere, which manifests as a pure magnetic dipole with no electric response. The effectiveness of the method was validated by characterizing the magnetic field distributions of various focused vector beams. It was subsequently employed to measure the magnetic topological spin structures, including individual Skyrmions and Meron/Skyrmion lattices for the first time. The proposed method may be a powerful tool to characterize the magnetic properties of optical spin and valuable in advancing spin photonics.