The classic ‘pseudo-2-dimensional’ (p2D) model of Newman and co-workers (also known as the DFN model), with its different efficient implementations, is the state-of-the-art physics-based electrochemical model for lithium-ion batteries. COMSOL Multiphysics (COMSOL) is a popular modeling software for multiphysics simulations, and its Battery Design Module for Li-ion batteries is widely used in the battery modeling community. This work presents a step-wise model development for reconstructing the detailed p2D model equations. This includes variable model parameters and weak-form implementation for the solid-phase diffusion, eliminating the need for non-local couplings and approximations for modeling the pseudo radial-dimension in the solid-phase.To model and understand the effect of capacity degradation on lithium-ion cells, the battery models in COMSOL need to incorporate additional degradation mechanisms. In this work, we have followed the approach of equation-based modeling in COMSOL, which enables us to formulate the p2D model using the mathematical PDE interfaces. This approach provides us with a lot of flexibility in terms of battery degradation model formulation and helps develop a clearer understanding of the p2D model equation in light of the assumptions involved.The steps in the model development involved writing the conservation equations in the generic mathematics interfaces coupled with the additional equations for the degradation mechanisms. The efforts were centered on developing cycling simulations based on Events for practically relevant operating conditions. This custom model was validated against the results from COMSOL’s Battery Interface, in-house codes, and baseline cycle data from the experiments and further developed as a physicochemical degradation model for automotive, large-format Lithium-ion batteries.This equation-based COMSOL model with cycling works without the requirement for Battery Design Module, LiveLink and Application Builder and can be adopted for a variety of electrochemical modeling applications by the electrochemical modeling community.