Apparent Recombination Research Articles

Mitotic recombinatory evolution in acute leukemia

A cohort of leukemia cases is presented with ancillary testing that includes microarray studies, karyotyping, FISH, and RNA sequencing to illustrate clonal evolution. Common evolution etiology with each case is apparent homologous mitotic recombination (HMR). The cohort includes: four cases of Pre B-cell acute lymphoblastic leukemia (B-ALL) with a single translocation derivative (19)t(1;19)(q23.3;p13.3), an acute myelogenous leukemia (AML) case with a paracentric inversion of 11q13.3q23 in both homologues confirmed as a rare KMT2A-MAML2 gene fusion, and a transplant patient in AML relapse with a t(6;11)(6q27;q23) and evolution to an additional derivative 6 chromosome. The PBX1-TCF3 fusion in the t(1;19) B-ALL subgroup has long been associated with clones that show either the balanced translocation (∼25%) or the unbalanced single derivative 19 (∼75%). Evidence from the CMAs and FISH is consistent with HMR initiating at either the PBX1 translocation breakpoint or at a more proximal long arm site that mediates the evolution to the unbalanced form. This is contrary to the previous assumptions of either nondisjunction duplication of the normal homologue with loss of the translocation derivative 1 or an original trisomy 1 that loses the translocation derivative 1. Relapse from an unrelated transplant donor created unique allele dosage ratios in the microarray of the AML patient with the t(6;11) KMT2A-AFDN fusion. An HMR-based evolution initiation site proximal to the 6q27 AFDN fusion gene is evident in the microarray of chromosome 6, the known oncogenic fusion derivative. The HMR selection driver in both AML cases is very likely associated with the DNA doubling of the oncogenic fusions in 6q and 11q, respectively. Since the oncogenic derivatives in the 1;19 cases are clearly the retained derivative 19, selection for the HMR clonal evolution in 1q is apparently based on the known proliferative advantage of extra copies of 1q in B-ALL and other malignancies. Although selection-based HMR can effectively initiate at any site proximal to a driver gene fusion, it appears that the translocation breaksite is common for many translocations. In addition, evidence from HMR evolution related distal 11q mutations, numerous unbalanced CCND1/IGH translocations, and the double MAML2/KMT2A presented in this study suggest that a recombinatorial "hot spot" exists near the CCND1 gene in many rearrangements or mutations within 11q.

A draft chromosome-scale genome assembly of a commercial sugarcane

Sugarcane accounts for a large portion of the worlds sugar production. Modern commercial cultivars are complex hybrids of S. officinarum, S. spontaneum, and several other Saccharum species, resulting in an auto-allopolyploid with 8–12 copies of each chromosome. The current genome assembly gold standard is to generate a long read assembly followed by chromatin conformation capture sequencing to scaffold. We used the PacBio RSII and chromatin conformation capture sequencing to sequence and assemble the genome of a South East Asian commercial sugarcane cultivar, known as Khon Kaen 3. The Khon Kaen 3 genome assembled into 104,477 contigs totalling 7 Gb, which scaffolded into 56 pseudochromosomes containing 5.2 Gb of sequence. Genome annotation produced 242,406 genes from 30,927 orthogroups. Aligning the Khon Kaen 3 genome sequence to S. officinarum and S. spontaneum revealed a high level of apparent recombination, indicating a chimeric assembly. This assembly error is explained by high nucleotide identity between S. officinarum and S. spontaneum, where 91.8% of S. spontaneum aligns to S. officinarum at 94% identity. Thus, the subgenomes of commercial sugarcane are so similar that using short reads to correct long PacBio reads produced chimeric long reads. Future attempts to sequence sugarcane must take this information into account.

Chromosome-specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing.

We developed a method to tag telomeres and measure telomere length by nanopore sequencing in the yeast S. cerevisiae. Nanopore allows long-read sequencing through the telomere, through the subtelomere, and into unique chromosomal sequence, enabling assignment of telomere length to a specific chromosome end. We observed chromosome end–specific telomere lengths that were stable over 120 cell divisions. These stable chromosome-specific telomere lengths may be explained by slow clonal variation or may represent a new biological mechanism that maintains equilibrium unique to each chromosome end. We examined the role of RIF1 and TEL1 in telomere length regulation and found that TEL1 is epistatic to RIF1 at most telomeres, consistent with the literature. However, at telomeres that lack subtelomeric Y′ sequences, tel1Δ rif1Δ double mutants had a very small, but significant, increase in telomere length compared with the tel1Δ single mutant, suggesting an influence of Y′ elements on telomere length regulation. We sequenced telomeres in a telomerase-null mutant (est2Δ) and found the minimal telomere length to be ∼75 bp. In these est2Δ mutants, there were apparent telomere recombination events at individual telomeres before the generation of survivors, and these events were significantly reduced in est2Δ rad52Δ double mutants. The rate of telomere shortening in the absence of telomerase was similar across all chromosome ends at ∼5 bp per generation. This new method gives quantitative, high-resolution telomere length measurement at each individual chromosome end and suggests possible new biological mechanisms regulating telomere length.

Evolution and Regulation of a Large Effector Family of Pyricularia oryzae.

Plant pathogen effectors play important roles in parasitism, including countering plant immunity. However, investigations of the emergence and diversification of fungal effectors across host-adapted populations has been limited. We previously identified a gene encoding a suppressor of plant cell death in Pyricularia oryzae (syn. Magnaporthe oryzae). Here, we report the gene is one of a 21-member gene family and we characterize sequence diversity in different populations. Within the rice pathogen population, nucleotide diversity is low, however; the majority of gene family members display presence-absence polymorphism or other null alleles. Gene family allelic diversity is greater between host-adapted populations and, thus, we named them host-adapted genes (HAGs). Multiple copies of HAGs were found in some genome assemblies and sequence divergence between the alleles in two cases suggested they were the result of repeat-induced point mutagenesis. Transfer of family members between populations and novel HAG haplotypes resulting from apparent recombination were observed. HAG family transcripts were induced in planta and a subset of HAGs are dependent on a key regulator of pathogenesis, PMK1. We also found differential intron splicing for some HAGs that would prevent ex planta protein expression. For some genes, spliced transcript was expressed in antiphase with an overlapping antisense transcript. Characterization of HAG expression patterns and allelic diversity reveal novel mechanisms for HAG regulation and mechanisms generating sequence diversity and novel allele combinations. This evidence of strong in planta-specific expression and selection operating on the HAG family is suggestive of a role in parasitism.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

Kinetic Monte Carlo Simulation of Perovskite Solar Cells to Probe Film Coverage and Thickness

Perovskite solar cells (PSCs) have received considerable attention in recent years due to their low processing cost and high‐power conversion efficiency. However, the mechanisms of PSCs are not fully understood. A model based on a probabilistic and statistical approach needs to be developed to simulate, optimize, and predict the photovoltaic (PV) performance of PSC. Herein, the 3D model based on the kinetic Monte Carlo (KMC) approach is developed to simulate 3D morphology of perovskite‐based solar cells and predict their PV performances and charge dynamics. The developed 3D model incorporates the temporal and physical behavior of perovskites, such as charge generation, transport, and recombination. The KMC simulation results show that pin holes‐free perovskite films with a homogenous 400 nm thick perovskite capping layer achieve the highest power conversion efficiency of 20.85%. However, the shortest apparent charge transport time (τt) and the longest apparent charge carrier recombination lifetime (τr) are found for the champion device. PV performance from the fabricated device is used to validate this simulation model. This model can provide a significant conceptual advance in identifying bottlenecks and guiding novel device designs to further improve the performance of perovskite PVs.

Intermediate Inheritance with Disomic Tendency in Tetraploid Intergeneric Citrus × Poncirus Hybrids Enhances the Efficiency of Citrus Rootstock Breeding

Rootstocks are crucial for the sustainability of the citrus industry worldwide. Diploid intergeneric Citrus × Poncirus hybrids have contributed considerably to citrus rootstock improvement and their tetraploid (doubled-diploid) forms are important resources for the creation of a new generation of tetraploid rootstocks. To optimize the efficiency of tetraploid rootstock breeding strategies, more knowledge is required on inheritance in the allotetraploid genitors. A set of 159 new SNP markers that fully distinguish Poncirus trifoliata (L.) Raf. from Citrus species was developed from polymorphisms mined in GBS data and used to establish a genetic map of tetraploid citrumelo (C. × paradisi Macfad. × P. trifoliata) and to analyze the meiotic behavior of tetraploid citrumelo and citrandarin (C. reticulata Blanco × P. trifoliata). The tetraploid citrumelo genetic map was highly syntenic and collinear with the clementine reference genome. The apparent intergeneric recombination rate was strongly limited by high preferential chromosome pairing, resulting in intermediate inheritance with disomic tendency. Such inheritance, also observed in tetraploid citrandarin, results in the transmission by the diploid gametes of a high rate of intergeneric heterozygosity. It is therefore expected that a large part of the genetic value selected in the original diploid intergeneric rootstock is transmitted to the tetraploid sexual progenies.

Nanoscale spatial mapping of charge carrier dynamics in perovskite solar cells

Abstract Charge carrier dynamics and behaviors are key parameters and need to be mapped at the nanoscale in order to search for correct materials for high-performance solar cells. Unfortunately, currently, there are no existing tools or capabilities that can simultaneously map charge carrier dynamics at nanometer range in solar cells. Here we use a Transient Photo-response AFM (TP-AFM) to map for the first time apparent carrier recombination lifetime (τr), transport time (τt) and diffusion length (LD) in hybrid perovskites solar cells. These spatially resolved parameters reveal substantial variations at grain boundaries (GBs) of perovskites. Improved τr, τt and LD at GBs broaden the performance of these state-of-the-art mixed cation perovskites. Detail analysis of these parameters allow us to conclude that reduced density of trap states and recombination in mixed cation perovskites at GBs and its surrounding locations (extending to several nanometers into the grain interior) implies less ion migration. This first of its kind experimental realization of nanoscale mapping of charge carrier dynamics in photovoltaic materials can be used for applications in other optoelectronic devices.

Molecular structures and mechanisms of DNA break processing in mouse meiosis.

Exonucleolytic resection, critical to repair double-strand breaks (DSBs) by recombination, is not well understood, particularly in mammalian meiosis. Here, we define structures of resected DSBs in mouse spermatocytes genome-wide at nucleotide resolution. Resection tracts averaged 1100 nt, but with substantial fine-scale heterogeneity at individual hot spots. Surprisingly, EXO1 is not the major 5' → 3' exonuclease, but the DSB-responsive kinase ATM proved a key regulator of both initiation and extension of resection. In wild type, apparent intermolecular recombination intermediates clustered near to but offset from DSB positions, consistent with joint molecules with incompletely invaded 3' ends. Finally, we provide evidence for PRDM9-dependent chromatin remodeling leading to increased accessibility at recombination sites. Our findings give insight into the mechanisms of DSB processing and repair in meiotic chromatin.

Dispersive and steady-state recombination in organic disordered semiconductors

Charge carrier recombination in organic disordered semiconductors is strongly influenced by the thermalization of charge carriers in the density of states (DOS). Measurements of recombination dynamics, conducted under transient or steady-state conditions, can easily be misinterpreted when a detailed understanding of the interplay of thermalization and recombination is missing. To enable adequate measurement analysis, we solve the multiple-trapping problem for recombining charge carriers and analyze it in the transient and steady excitation paradigm for different DOS distributions. We show that recombination rates measured after pulsed excitation are inherently time dependent since recombination gradually slows down as carriers relax in the DOS. When measuring the recombination order after pulsed excitation, this leads to an apparent high-order recombination at short times. As times goes on, the recombination order approaches an asymptotic value. For the Gaussian and the exponential DOS distributions, this asymptotic value equals the recombination order of the equilibrated system under steady excitation. For a more general DOS distribution, the recombination order can also depend on the carrier density, under both transient and steady-state conditions. We conclude that transient experiments can provide rich information about recombination in and out of equilibrium and the underlying DOS occupation provided that consistent modeling of the system is performed.

Insight into the effects of modifying chromophores on the performance of quinoline-based dye-sensitized solar cells

A series of organic dyes based on quinoline as an electron-deficient π-linker, were designed and synthesized for dye sensitized solar cells (DSSC) application. These push-pull conjugated dyes, sharing same anchoring group with distinctive electron-rich donating groups such as N,N-diethyl (DEA-Q), 3,6-dimethoxy carbazole (CBZ-Q), bis(4-butoxyphenyl)amine (BPA-Q), were synthesized by Riley oxidation of CH3 followed by Knoevenagel condensation of the corresponding aldehyde precursors 2a–c with cyanoacrylic acid. The optical, electrochemical, theoretical calculation and photovoltaic properties with these three dyes were systematically investigated. Compared to DEA-Q and CBZ-Q, BPA-Q possesses better light harvesting properties with regard to extended conjugate length, red-shifted intramolecular charge transfer band absorption and broaden light-responsive IPCE spectrum, resulting in a greater short circuit photocurrent density output. BPA-Q also has improved open-circuit voltage due to the apparent large charge recombination resistance. Consequently, assembled with iodine redox electrolytes, the device with BPA-Q achieved the best overall conversion efficiency value of 3.07% among three dyes under AM 1.5G standard conditions. This present investigation demonstrates the importance of various N-substituent chromophores in the prevalent D-π-A type organic sensitizers for tuning the photovoltaic performance of their DSSCs.

1D and 2D NMR Spectroscopy of Bonding Interactions within Stable and Phase-Separating Organic Electrolyte-Cellulose Solutions.

Organic electrolyte solutions (i.e. mixtures containing an ionic liquid and a polar, molecular co-solvent) are highly versatile solvents for cellulose. However, the underlying solvent-solvent and solvent-solute interactions are not yet fully understood. Herein, mixtures of the ionic liquid 1-ethyl-3-methylimidazolium acetate, the co-solvent 1,3-dimethyl-2-imidazolidinone, and cellulose are investigated using 1D and 2D NMR spectroscopy. The use of a triply-13 C-labelled ionic liquid enhances the signal-to-noise ratio for 13 C NMR spectroscopy, enabling changes in bonding interactions to be accurately pinpointed. Current observations reveal an additional degree of complexity regarding the distinct roles of cation, anion, and co-solvent toward maintaining cellulose solubility and phase stability. Unexpectedly, the interactions between the dialkylimidazolium ring C2 -H substituent and cellulose become more pronounced at high temperatures, counteracted by a net weakening of acetate-cellulose interactions. Moreover, for mixtures that exhibit critical solution behavior, phase separation is accompanied by the apparent recombination of cation-anion pairs.

HPV positive neuroendocrine cervical cancer cells are dependent on Myc but not E6/E7 viral oncogenes

Using conditional cell reprogramming, we generated a stable cell culture of an extremely rare and aggressive neuroendocrine cervical cancer. The cultured cells contained HPV-16, formed colonies in soft agar and rapidly produced tumors in immunodeficient mice. The HPV-16 genome was integrated adjacent to the Myc gene, both of which were amplified 40-fold. Analysis of RNA transcripts detected fusion of the HPV/Myc genes, arising from apparent microhomologous recombination. Spectral karyotyping (SKY) and fluorescent-in-situ hybridization (FISH) demonstrated coordinate localization and translocation of the amplified Myc and HPV genes on chromosomes 8 and 21. Similar to the primary tumor, tumor cell cultures expressed very high levels of the Myc protein and, in contrast to all other HPV-positive cervical cancer cell lines, they harbored a gain-of-function mutation in p53 (R273C). Unexpectedly, viral oncogene knockdown had no effect on the growth of the cells, but it did inhibit the proliferation of a conventional HPV-16 positive cervical cancer cell line. Knockdown of Myc, but not the mutant p53, significantly inhibited tumor cell proliferation. On the basis of these data, we propose that the primary driver of transformation in this aggressive cervical cancer is not HPV oncogene expression but rather the overexpression of Myc.

Analytical theory for charge carrier recombination in blend organic solar cells

An analytical theory is suggested for carrier recombination in organic bulk heterojunction (BHJ) structures taking into account the spatial separation of recombining species. In BHJ systems, electrons and holes are confined to two different material phases, and the nongeminate recombination can happen only at the interfaces between the phases. The carrier concentration in the vicinity of the interface can essentially differ from the average concentration in the bulk. Conditions are considered at which this difference can lead to deviations of the apparent recombination order from the value $\ensuremath{\delta}=2$ that is generally expected for bimolecular reactions. The theory is universal in the sense that it is based solely on the inhomogeneous distributions of the recombining species. It can therefore be applied not only to organic semiconductors but to any system in which recombining species are confined to different material phases and can meet only at the interfaces between these phases.

Polarity effects and apparent ion recombination in microionization chambers.

Microchambers demonstrate anomalous voltage-dependent polarity effects. Existing polarity and ion recombination correction factors do not account for these effects. As a result, many commercial microchamber models do not meet the specification of a reference-class ionization chamber as defined by the American Association of Physicists in Medicine. The purpose of this investigation is to determine the cause of these voltage-dependent polarity effects. A series of microchamber prototypes were produced to isolate the source of the voltage-dependent polarity effects. Parameters including ionization-chamber collecting-volume size, stem and cable irradiation, chamber assembly, contaminants, high-Z materials, and individual chamber components were investigated. Measurements were performed with electrodes coated with graphite to isolate electrode conductivity. Chamber response was measured as the potential bias of the guard electrode was altered with respect to the collecting electrode, through the integration of additional power supplies. Ionization chamber models were also simulated using comsol Multiphysics software to investigate the effect of a potential difference between electrodes on electric field lines and collecting volume definition. Investigations with microchamber prototypes demonstrated that the significant source of the voltage-dependent polarity effects was a potential difference between the guard and collecting electrodes of the chambers. The voltage-dependent polarity effects for each prototype were primarily isolated to either the guard or collecting electrode. Polarity effects were reduced by coating the isolated electrode with a conductive layer of graphite. Polarity effects were increased by introducing a potential difference between the electrodes. comsol simulations further demonstrated that for a given potential difference between electrodes, the collecting volume of the chamber changed as the applied voltage was altered, producing voltage-dependent polarity effects in the chamber response. Ionization chamber measurements and comsol simulations demonstrated an inverse relationship between the chamber collecting volume size and the severity of voltage-dependent polarity effects on chamber response. The effect of a given potential difference on chamber polarity effects was roughly ten times greater for microchambers as compared to Farmer-type chambers. Stem and cable irradiations, chamber assembly, contaminants, and high-Z materials were not found to be a significant source of the voltage-dependent polarity effects. A potential difference between the guard and collecting electrodes was found to be the primary source of the voltage-dependent polarity effects demonstrated by microchambers. For a given potential difference between electrodes, the relative change in the collecting volume is smaller for larger-volume chambers, illustrating why these polarity effects are not seen in larger-volume chambers with similar guard and collecting electrode designs. Thus, for small-volume chambers, it is necessary to reduce the potential difference between the guard and collecting electrodes in order to reduce polarity effects for reference dosimetry measurements.

Detection of BCR-ABL1 mutations that confer tyrosine kinase inhibitor resistance using massively parallel, next generation sequencing.

Detection of BCR-ABL1 mutations that confer resistance to tyrosine kinase inhibitors is important for management of patients with t(9;22);BCR-ABL1-positive (Ph+) leukemias. Testing is often performed using Sanger sequencing (SS) which has relatively poor sensitivity. Given the widespread adoption of next generation sequencing (NGS), we sought to reevaluate the testing in the context of NGS methods. We developed an NGS-based BCR-ABL1 mutation test on the Ion Torrent Personal Genome Machine (PGM) to test for resistance mutations, primarily in the kinase domain in BCR-ABL1. We analyzed 508 clinical samples from patients with Ph+ leukemias. In a subset of these samples (n = 97), we conducted a comparison of the NGS results to a classical SS-based test. NGS facilitated detection of low-level mutations (<20% allele frequency) that were not detectable by SS. In a subset of cases with multiple mutations, NGS was also able to determine if two mutations were on the same molecule (compound) or on separate molecules (polyclonal) but this was limited by the distance between mutated positions and by the effects of apparent distance-dependent PCR recombination. We found 22 compound mutations that centered on one or two key residues including two novel compound mutants: Q252H/Y253H and F311Y/F359I. The advantages of NGS make it a superior method for inventorying BCR-ABL1 resistance mutations. However, data analysis may be complicated by short read lengths and the effects of PCR recombination.

Molar Mass versus Polymer Solar Cell Performance: Highlighting the Role of Homocouplings

Although a strong link between the molar mass of conjugated polymers and the performance of the resulting polymer:fullerene bulk heterojunction organic solar cells has been established on numerous occasions, a clear understanding of the origin of this connection is still lacking. Moreover, the usual description of molar mass and polydispersity does not include the shape of the polymer distribution, although this can have a significant effect on the device properties. In this work, the effect of molar mass distribution on photovoltaic performance is investigated using a combination of structural and electro-optical techniques for the state-of-the-art low bandgap copolymer PTB7. Some of the studied commercial PTB7 batches exhibit a bimodal distribution, of which the low molar mass fraction contains multiple homocoupled oligomer species, as identified by MALDI-TOF analysis. This combination of low molar mass and homocoupling drastically reduces device performance, from 7.0 to 2.7%. High molar mass batches show improved charge carrier transport and extraction with much lower apparent recombination orders, as well as a more homogeneous surface morphology. These results emphasize the important effect of molar mass distributions and homocoupling defects on the operation of conjugated polymers in photovoltaic devices.

Quantifying Impact of Chromosome Copy Number on Recombination in Escherichia coli.

The ability to precisely and efficiently recombineer synthetic DNA into organisms of interest in a quantitative manner is a key requirement in genome engineering. Even though considerable effort has gone into the characterization of recombination in Escherichia coli, there is still substantial variability in reported recombination efficiencies. We hypothesized that this observed variability could, in part, be explained by the variability in chromosome copy number as well as the location of the replication forks relative to the recombination site. During rapid growth, E. coli cells may contain several pairs of open replication forks. While recombineered forks are resolving and segregating within the population, changes in apparent recombineering efficiency should be observed. In the case of dominant phenotypes, we predicted and then experimentally confirmed that the apparent recombination efficiency declined during recovery until complete segregation of recombineered and wild-type genomes had occurred. We observed the reverse trend for recessive phenotypes. The observed changes in apparent recombination efficiency were found to be in agreement with mathematical calculations based on our proposed mechanism. We also provide a model that can be used to estimate the total segregated recombination efficiency based on an initial efficiency and growth rate. These results emphasize the importance of employing quantitative strategies in the design of genome-scale engineering efforts.

Effect of molecular weight on morphology and photovoltaic properties in P3HT:PCBM solar cells

The molecular weight of poly(3-hexylthiophene) is an important factor influencing the photovoltaic properties of bulk heterojunction organic solar cells based on this material. However, since different synthetic processes or repetitive soxhlet extractions – generally applied to obtain the different molecular weight batches under study – result in samples with simultaneously varying regioregularity (RR) and polydispersity index (PDI), it has not been possible yet to find an unambiguous correlation between the molecular weight and the photovoltaic performance. In the present work preparative gel permeation chromatography is introduced as a versatile technique to fractionate the donor polymer and thereby obtain a systematic variation of the number average molecular weight (Mn=11–91kgmol−1) with an almost constant PDI and RR. Polymer crystallinity and conjugation length are evaluated by UV–Vis spectroscopy, rapid heat-cool calorimetry and selected area electron diffraction, and are found to be deeply affected by Mn. This in turn influences the behavior of the charge transfer state energy, measured via Fourier transform photocurrent spectroscopy, and therefore the open-circuit voltage. The short-circuit current is also affected by Mn, but mainly due to a change in absorption coefficient. The apparent recombination order is shown to be linked to the morphology of the polymer:fullerene blend and is determined using transient photovoltage and photocurrent techniques. Finally, a correlation between recombination and fill factor is also suggested.

Charge Recombination in P3HT/PC70BM Composite Studied by Light-Induced EPR

A composite of conductive polythiophene P3HT and soluble fullerene derivative PC70BM (the material widely used as the active layer in organic photovoltaics devices) was studied by light-induced EPR (LEPR). In contrast to P3HT/PC60BM composite, LEPR signal in P3HT/PC70BM can be detected in a wide temperature range up to room temperature. This signal was attributed to charge carriers P3HT+ and PC70BM–. The dependence of the intensity of LEPR signal on light intensity and the decay of LEPR signal upon switching light off are interpreted in frame of trap-limited bimolecular recombination model with finite rate of back electron transfer in [P3HT+ PC70BM–] encounter complex at polymer–fullerene interface. The apparent recombination order was found to be close to p = 3.5 for the temperature range from 100 K to room temperature. For temperatures above 150 K Arrhenius behavior of effective recombination rate constant was obtained with the activation energy Ea = 0.16 ± 0.01 eV, which is larger than analogous values for P3HT/PC60BM reported previously. This difference is attributed to the change of polymer/fullerene interface induced by the replacement of PC60BM by PC70BM.

Nongeminate recombination in neat P3HT and P3HT:PCBM blend films

The slow decay of charge carriers in polymer–fullerene blends measured in transient studies has raised a number of questions about the mechanisms of nongeminate recombination in these systems. In an attempt to understand this behavior, we have applied a combination of steady-state and transient photoinduced absorption measurements to compare nongeminate recombination behavior in films of neat poly(3-hexyl thiophene) (P3HT) and P3HT blended with [6,6]-phenyl-C61 butyric acid methyl ester (PCBM). Transient measurements show that carrier recombination in the neat P3HT film exhibits second-order decay with a recombination rate coefficient that is similar to that predicted by Langevin theory. In addition, temperature dependent measurements indicate that neat films exhibit recombination behavior consistent with the Gaussian disorder model. In contrast, the P3HT:PCBM blend films are characterized by a strongly reduced recombination rate and an apparent recombination order greater than two. We then assess a number of previously proposed explanations for this behavior including phase separation, carrier concentration dependent mobility, non-encounter limited recombination, and interfacial states. In the end, we propose a model in which pure domains with a Gaussian density of states are separated by a mixed phase with an exponential density of states. We find that such a model can explain both the reduced magnitude of the recombination rate and the high order recombination kinetics and, based on the current state of knowledge, is the most consistent with experimental observations.