The inhabitation of microorganisms and their subsequent interaction with mineral matrix of the stone substrate under varied environmental conditions encourages deterioration of stones leading to the loss of strength, durability and aesthetic. This study highlighted the synthesis of nanosilver particles (AgNPs) using the biogenic volatiles of the bacterial strain Nesterenkonia halobia. The antimicrobial activities of AgNPs were evaluated against the gram positive bacterial strain Streptomyces parvullus and fungal strain Apergillus niger. Furthermore, the silver particles were mixed with two types of consolidation polymers and were used to coat the external surfaces of sandstone and limestone blocks. The stones treated with silicon polymer loaded with AgNPs showed an elevated antimicrobial potentiality against A. niger and S. parvullus. Scan electron microscope (SEM) and electron dispersive X-ray spectroscopy (EDX) analysis of treated stones demonstrated the existence of nano-composite structures containing the elemental silver. Polymers functionalized with AgNPs can be used not only as potent biocides but also for the consolidation of the historic monuments and artifacts.