Dam construction for social-economic benefits has raised substantial biological and ecological concerns. However, contrasting findings have been reported regarding the role of hydrological modification in floodplain lake ecosystems. Here, we evaluated the influence of hydrology and dam construction on the eutrophication of floodplain lakes over the last 200 years by studying Zn/Al (an indicator of industrial activities), nutrient influxes (total phosphorus, TP), cyanobacteria production (canthaxanthin) and aquatic invertebrate dynamics (chironomids) in 210Pb dated sediment cores from two Ramsar Wetlands of International Importance in the middle Yangtze floodplain, one dammed (Wanghu) and the other freely connected (Poyang) with the Yangtze River. The results show that Wanghu Lake transitioned to a macrophyte-dominated clear water state (as indicated by the increases in pigment derived ultraviolet radiation index and dominance of macrophyte-related chironomid taxa) after local dam construction when anthropogenic nutrient loadings were relatively low. With increases in nutrient loadings, phytoplankton increased in both lakes, but water clarity declined and macrophyte-related chironomids decreased only in the lake which was locally dammed. Our study reveals that local damming facilitates the response of floodplain lake ecosystems to eutrophication and decouples it from the effects of hydrological variability. This study highlights the potential influence of hydrology and damming on the eutrophication of floodplain lakes by influencing water clarity and macrophyte coverage, implying that evaluating the role of local dam construction on ecosystem states should be based on knowledge of nutrient conditions in floodplain lakes.