AbstractFlow of dense shelf water provide an efficient mechanism for pumping CO2 to the deep ocean along the continental shelf slope, particularly around the Antarctic bottom water (AABW) formation areas where much of the global bottom water is formed. However, the contribution of the formation of AABW to sequestering anthropogenic carbon (Cant) and its consequences remain unclear. Here, we show prominent transport of Cant (25.0 ± 4.7 Tg C yr−1) into the deep ocean (>2,000 m) in four AABW formation regions around Antarctica based on an integrated observational data set (1974–2018). This maintains a lower Cant in the upper waters than that of other open oceans to sustain a stronger CO2 uptake capacity (16.9 ± 3.8 Tg C yr−1). Nevertheless, the accumulation of Cant can further trigger acidification of AABW at a rate of −0.0006 ± 0.0001 pH unit yr−1. Our findings elucidate the prominent role of AABW in controlling the Southern Ocean carbon uptake and storage to mitigate climate change, whereas its side effects (e.g., acidification) could also spread to other ocean basins via the global ocean conveyor belt.