Annual Plant Arabidopsis Thaliana Research Articles

The poetry of reproduction: the role of LEAFY in Arabidopsis thaliana flower formation

For successful reproduction, angiosperms must form fertile flowers at the appropriate positions and at the appropriate times. The reproductive transition is especially important for monocarpic plants that only flower once. In the model annual plant Arabidopsis thaliana, this transition is controlled through regulation of a group of genes termed floral meristem identity genes, of which LEAFY (LFY) is arguably the most important. LFY orthologs are found throughout land plants and are essential for angiosperm reproduction. These genes have also been implicated in reproductive development in gymnosperms. LFY encodes a plant-specific transcription factor that can act as either an activator or repressor depending on context, including what co-factors it is interacting with. It controls multiple aspects of floral morphogenesis, including phyllotaxis, organ number, organ identity and determinacy. Much progress has been made in elucidating the molecular mechanisms through which LFY and its orthologs contribute to a precise switch to flowering. We discuss the current state of knowledge in Arabidopsis, with an emphasis on known target genes and co-factors of LFY.

Temporal variation in genetic diversity and effective population size of Mediterranean and subalpine Arabidopsis thaliana populations

Currently, there exists a limited knowledge on the extent of temporal variation in population genetic parameters of natural populations. Here, we study the extent of temporal variation in population genetics by genotyping 151 genome-wide SNP markers polymorphic in 466 individuals collected from nine populations of the annual plant Arabidopsis thaliana during 4 years. Populations are located along an altitudinal climatic gradient from Mediterranean to subalpine environments in NE Spain, which has been shown to influence key demographic attributes and life cycle adaptations. Genetically, A. thaliana populations were more variable across space than over time. Common multilocus genotypes were detected several years in the same population, whereas low-frequency multilocus genotypes appeared only 1 year. High-elevation populations were genetically poorer and more variable over time than low-elevation populations, which might be caused by a higher overall demographic instability at higher altitudes. Estimated effective population sizes were low but also showed a significant decreasing trend with increasing altitude, suggesting a deeper impact of genetic drift at high-elevation populations. In comparison with single-year samplings, repeated genotyping over time captured substantially higher amount of genetic variation contained in A. thaliana populations. Furthermore, repeated genotyping of populations provided novel information on the genetic properties of A. thaliana populations and allowed hypothesizing on their underlying mechanisms. Therefore, including temporal genotyping programmes into traditional population genetic studies can significantly increase our understanding of the dynamics of natural populations.

The evolution of competitive strategies in annual plants

Annual plants are common in disturbed habitats. It is frequently assumed that because these habitats often have low-plant density, competition is not important in shaping the ecological strategies of annual plants. We test for competitive strategies in genotypes of the short-lived annual plant Arabidopsis thaliana. Genotypes were grown in treatments with or without conspecific competitors. We measured size at reproduction and fitness (fruit production) at final development. We estimated competitive ability in each genotype at first reproduction (the ability to maintain size in the presence of competitors) and at final development (the ability to maintain fruit production in the presence of competitors). Genotypes showed relatively high competitive ability measured as fruit production at final development, but most genotypes had low competitive ability measured as size at reproduction. Our results suggest that competition has been important in the evolution of strategies in these genotypes but vegetative size is not a strong predictor of competitive ability. Rather, competitive ability is determined by the capacity to reproduce efficiently in the presence of competitors. The competitive strategies expressed across these genotypes suggest that competition has been a selective force in these plants, and that a fast life history is not equivalent to an “r-strategy.”

Cost of resistance to herbivory in the annual plant Arabidopsis thaliana

This study examines the assumption that plant resistance to herbivory has fitness costs. To assess costs, I used the standard method of determining whether there is a significant negative genetic correlation between the resistance character and damage in the presence of herbivory and with fitness in the absence of herbivory. Seeds of five plants from four genotypes of Arabidopsis thaliana were sown under controlled conditions in a growth chamber. Half of the resulting two months-old rosettes were used for glucosinolate analysis and for herbivory assessment. The other half was transplanted into an enclosure in the natural habitat of this plant and fitness (fruit number) was measured after harvesting the plants. Caterpillars from Spodoptera exigua were obtained from a lab culture for herbivory assessment. Two second instar caterpillars from S. exigua were placed on each of rosettes. Larval weight of caterpillars was measured after 5 days. One hundred mg dry mass of leaves of 5 rosettes of each genotypes were used for HPLC analysis. There were genetic variations in types and quantities of glucosinolate between genotypes. The results from herbivory assessment showed that the larval weight of S. exigua fed on some genotypes was significantly lower than others, and therefore there was genetic variation in resistance to herbivore for A. thaliana genotypes. Statistical analysis showed that the larval weight of S. exigua was negatively correlated with total glucosinolate concentration and with fruit number. Therefore under the condition of this experiment, glucosinolstes reduced damaged by S. exigua and exhibited significant fitness costs.

Adaptation and extinction in experimentally fragmented landscapes.

Competition and disturbance are potent ecological forces that shape evolutionary trajectories. These forces typically work in opposition: when disturbance is infrequent, densities are high and competition is intense. In contrast, frequent disturbance creates a low-density environment in which competition is weak and good dispersal essential. We exploited recent advances in genomic research to quantify the response to selection by these powerful ecological forces at the phenotypic and molecular genetic level in experimental landscapes. We grew the annual plant Arabidopsis thaliana in discrete patches embedded in a hostile matrix and varied the number and size of patches and the intensity of disturbance, by creating both static and dynamic landscapes. In static landscapes all patches were undisturbed, whereas in dynamic landscapes all patches were destroyed in each generation, forcing seeds to disperse to new locations. We measured the resulting changes in phenotypic, genetic, and genotypic diversity after five generations of selection. Simulations revealed that the observed loss of genetic diversity dwarfed that expected under drift, with dramatic diversity loss, particularly from dynamic landscapes. In line with ecological theory, static landscapes favored good competitors; however, competitive ability was linked to growth rate and not, as expected, to seed mass. In dynamic landscapes, there was strong selection for increased dispersal ability in the form of increased inflorescence height and reduced seed mass. The most competitive genotypes were almost eliminated from highly disturbed landscapes, raising concern over the impact of increased levels of human-induced disturbance in natural landscapes.

Plant genetic diversity yields increased plant productivity and herbivore performance

Summary 1. Plant genotypic diversity has important consequences for a variety of ecosystem processes, yet empirical evidence for its effects on productivity, one of the most fundamental of these processes, is lacking. In addition, the performance of insect herbivores in response to high genotypic diversity is unknown, despite previous work demonstrating differential herbivore performance among plant genotypes. 2. We manipulated genotypic diversity of the annual plant Arabidopsis thaliana in both the presence and absence of the generalist herbivore Trichoplusia ni under semi‐natural growth conditions. We used nine genotypes (eight ecotypes and one mutant) of A. thaliana known to differ widely in functional traits. Productivity and insect biomass were measured in monocultures and mixtures of all nine genotypes grown at multiple fertilization levels and planting densities. 3. In both the absence and presence of herbivores, genotypic diversity increased plant productivity and survival. This effect was, for the most part, independent of fertility or density. Sampling or selection effects did not appear to be wholly responsible for these results as all genotypes were maintained in equal proportion and no single genotype became dominant for the duration of the experiment. 4. High diversity increased T. ni biomass and survival in all treatments. Insect biomass was positively, but not tightly, correlated to plant biomass, indicating that the higher herbivore performance observed in genotypic mixtures was only partially due to higher productivity. 5. Synthesis. Our data support the idea that even within a single plant species, genotypic diversity can exert strong influences on both the producer and herbivore communities. The exact mechanisms responsible for these effects and the relative importance of genotypic diversity in natural communities warrant further investigation.

Salicylic acid deficiency in NahG transgenic lines and sid2 mutants increases seed yield in the annual plant Arabidopsis thaliana

Salicylic acid-deficient NahG transgenic lines and sid2 mutants were used to evaluate the role of this compound in the development of the short-lived, annual plant Arabidopsis thaliana, with a particular focus on the interplay between salicylic acid and other phytohormones. Low salicylic acid levels led to increased growth, as well as to smaller abscisic acid levels and reduced damage to PSII (as indicated by Fv/Fm ratios) during the reproductive stages in rosette leaves of NahG transgenic lines and sid2 mutants, compared with wild-type plants. Furthermore, salicylic acid deficiency highly influenced seed yield and composition. Seed production increased by 4.4-fold and 3.5-fold in NahG transgenic lines and sid2 mutants, respectively, compared to the wild type. Salicylic acid deficiency also improved seed composition in terms of antioxidant vitamin concentrations, seeds of salicylic acid-deficient plants showing higher levels of α- and γ-tocopherol (vitamin E) and β-carotene (pro-vitamin A) than seeds of wild-type plants. Seeds of salicylic acid-deficient plants also showed higher nitrogen concentrations than seeds of wild-type plants. It is concluded that (i) the sid2 gene, which encodes for isochorismate synthase, plays a central role in salicylic acid biosynthesis during plant development in A. thaliana, (ii) salicylic acid plays a role in the regulation of growth, senescence, and seed production, (iii) there is a cross-talk between salicylic acid and other phytohormones during plant development, and (iv) the concentrations of antioxidant vitamins in seeds may be influenced by the endogenous levels of salicylic acid in plants.

Maternal Effects and Germination Timing Mediate the Expression of Winter and Spring Annual Life Histories inArabidopsis thaliana

In natural populations of the annual plant Arabidopsis thaliana, season of germination determines life history. Spring annuals overwinter as seeds and germinate and flower in spring. Winter annuals germinate in fall, overwinter as rosettes, and flower in spring. In many plant species, germination is affected by the maternal phenotype during seed production. In those that produce seeds on branches from the main stem and branches from basal nodes, like A. thaliana, there may be positional effects on germination. This study examines the effects of maternal branch type on germination in artificial seasonal spring and fall environments. Seeds from apical and basal branches of 41 accessions of A. thaliana were weighed and divided between spring (low temperature for 21 d) and fall (ambient temperature) germination environments. Maternal branch type had significant effects on germination fraction and seed mass, but the direction of the effect differed among accessions. The genetic correlation between seed mass an...

Herbivory and Abiotic Factors Affect Population Dynamics of Arabidopsis thaliana in a Sand Dune Area

Population dynamics of the annual plant Arabidopsis thaliana (L.) Heynh. were studied in a natural habitat of this species on the coastal dunes of the Netherlands. The main objective was to elucidate factors controlling population dynamics and the relative importance of factors affecting final population density. Permanent plots were established and plants were mapped to obtain data on survival and reproductive performance of each individual, with special attention to herbivore damage. In experimental plots we studied how watering, addition of nutrients, artificial disturbance, and natural herbivores affected survival and growth. Mortality was low during autumn and early winter and high at the time of stem elongation, between February and April. A key factor analysis showed a high correlation between mortality from February to April and total mortality. The specialist weevils Ceutorhyncus atomus and C. contractus (Curculionidae) were identified as the major insect herbivores on A. thaliana, reducing seed production by more than 40 %. These herbivores acted in a plant size-dependent manner, attacking a greater fraction of the fruits on large plants. While mortality rates were not affected by density, fecundity decreased with density, although the effect was small. Adding water reduced mortality in rosette and flowering plant stages. Soil disturbance did not increase seed germination, but did have a significant positive effect on survival of rosette and flowering plants. Seed production of A. thaliana populations varied greatly between years, leading to population fluctuations, with a small role for density-dependent fecundity and plant size-dependent herbivory.

Elevated CO2 influences herbivory-induced defense responses of Arabidopsis thaliana

We experimentally demonstrate that elevated CO(2) can modify herbivory-induced plant chemical responses in terms of both total and individual glucosinolate concentrations. Overall, herbivory by larvae of diamondback moths (Plutella xylostella) resulted in no change in glucosinolate levels of the annual plant Arabidopsis thaliana under ambient CO(2) conditions. However, herbivory induced a significant 28-62% increase in glucosinolate contents at elevated CO(2). These inducible chemical responses were both genotype-specific and dependent on the individual glucosinolate considered. Elevated CO(2) can also affect structural defenses such as trichomes and insect-glucosinolate interactions. Insect performance was significantly influenced by specific glucosinolates, although only under CO(2) enrichment. This study can have implications for the evolution of inducible defenses and coevolutionary adaptations between plants and their associated herbivores in future changing environments.

Plasticity to light cues and resources in Arabidopsis thaliana: testing for adaptive value and costs.

Plants shaded by neighbors or overhead foliage experience both a reduction in the ratio of red to far red light (R:FR), a specific cue perceived by phytochrome, and reduced photosynthetically active radiation (PAR), an essential resource. We tested the adaptive value of plasticity to crowding and to the cue and resource components of foliage shade in the annual plant Arabidopsis thaliana by exposing 36 inbred families from four natural populations to four experimental treatments: (1) high density, full sun; (2) low density, full sun; (3) low density, neutral shade; and (4) low density, low R:FR-simulated foliage shade. Genotypic selection analysis within each treatment revealed strong environmental differences in selection on plastic life-history traits. We used specific contrasts to measure plasticity to density and foliage shade, to partition responses to foliage shade into phytochrome-mediated responses to the R:FR cue and responses to PAR, and to test whether plasticity was adaptive (i.e., in the same direction as selection in each environment). Contrary to expectation, we found no evidence for adaptive plasticity to density. However, we observed both adaptive and maladaptive responses to foliage shade. In general, phytochrome-mediated plasticity to the R:FR cue of foliage shade was adaptive and counteracted maladaptive growth responses to reduced PAR. These results support the prediction that active developmental responses to environmental cues are more likely to be adaptive than are passive resource-mediated responses. Multiple regression analysis detected a few costs of adaptive plasticity and adaptive homeostasis, but such costs were infrequent and their expression depended on the environment. Thus, costs of plasticity may occasionally constrain the evolution of adaptive responses to foliage shade in Arabidopsis, but this constraint may differ among environments and is far from ubiquitous.

Evolution of phenotypic plasticity a comparative approach in the phylogenetic neighbourhood of Arabidopsis thaliana

Abstract The evolution of phenotypic plasticity has rarely been examined within an explicitly phylogenetic framework, making use of modern comparative techniques. Therefore, the purpose of this study was to determine phylogenetic patterns in the evolution of phenotypic plasticity in response to vegetation shade (the ‘shade avoidance’ syndrome) in the annual plant Arabidopsis thaliana and its close relatives. Specifically, we asked the following questions: (i) Do A. thaliana and related species differ within or among clades in the magnitude and/or pattern of plasticity to shade? (ii) Are the phenotypic variance–covariance matrices (phenotypic integration) of these taxa plastic to the changes in light quality induced by the presence of a canopy? (iii) To what extent does the variation in uni- and multivariate plasticity match the phylogeny of Arabidopsis? In order to address these questions we grew individuals from six taxa of known phylogenetic relationship in a greenhouse under full sun and under a grass canopy. Taxa differed in the magnitude, but not in the pattern, of plasticities for all traits. At the univariate level, the late flowering species, A. pumila and A. griffithiana, as well as the late flowering Moscow ecotype of A. thaliana, showed greater plasticity for allocation to vegetative and reproductive meristems. At the multivariate level, several taxa displayed a very low stability of their variance–covariance structures to environmental change, with only one taxon sharing as many as three principal components across environments. We conclude that both univariate and multivariate plasticities to vegetation shade can evolve rapidly within a genus of flowering plants, with little evidence of historical constraints (phylogenetic inertia).

Cost of Resistance to Natural Enemies in Field Populations of the Annual Plant Arabidopsis thaliana

The annual plant Arabidopsis thaliana is widely used as a model system in molecular genetics, but little is known about populations in the field. In this experimental field study of natural populations of Arabidopsis, I tested the assumption that plant resistance has fitness costs. Models of the evolution of resistance assume a cost, which is envisioned as a reduction in fitness in the absence of natural enemies, such as insect herbivores and pathogens. The presumed basis of this cost is the diversion of limiting resources away from present and future growth and reproduction. Recent failures to detect allocation costs of resistance to herbivores have raised questions about whether costs exist and, thus, about the appropriateness of theories that postulate such costs. I found genetic variation for two traits commonly thought to function as resistance characters: trichome density and total glucosinolate concentration. Under field conditions, these characters both reduced damage by the natural assemblage of herbivores and exhibited significant fitness costs.

Costs of Resistance to Natural Enemies in Field Populations of the Annual PlantArabidopsis thaliana

The annual plant Arabidopsis thaliana is widely used as a model system in molecular genetics, but little is known about populations in the field. In this experimental field study of natural populations of Arabidopsis, I tested the assumption that plant resistance has fitness costs. Models of the evolution of resistance assume a cost, which is envisioned as a reduction in fitness in the absence of natural enemies, such as insect herbivores and pathogens. The presumed basis of this cost is the diversion of limiting resources away from present and future growth and reproduction. Recent failures to detect allocation costs of resistance to herbivores have raised questions about whether costs exist and, thus, about the appropriateness of theories that postulate such costs. I found genetic variation for two traits commonly thought to function as resistance characters: trichome density and total glucosinolate concentration. Under field conditions, these characters both reduced damage by the natural assemblage of herbivores and exhibited significant fitness costs.

VARIATION IN THE DEFENSE STRATEGIES OF PLANTS: ARE RESISTANCE AND TOLERANCE MUTUALLY EXCLUSIVE?

Plants can employ two general strategies to defend themselves against herbivory: they can either reduce the amount of damage they experience (resistance), or they can tolerate herbivore damage. Theoretical considerations suggest that, in many cases, tolerance and resistance are redundant strategies, and may therefore be mutually exclusive adaptations. In this investigation of natural populations of the annual plant Arabidopsis thaliana we examine whether the pattern of selection acting on resistance and tolerance favors the evolution of one defense strategy, or the other, but not both. We found that the joint pattern of selection acting on tolerance and two resistance traits, trichome density and total glucosinolate concentration, indicated that there were not alternate peaks in the fitness landscape favoring either resistance or tolerance. Rather, selection favored the retention of both tolerance and resistance. One reason for the absence of mutually exclusive alternative resistance/tolerance strategies is the absence of a negative genetic correlation between resistance and tolerance. An unexpected result is the detection of disruptive selection acting on tolerance, which seems to result from a nonlinear relationship between tolerance and its costs.

Alterations in Water Status, Endogenous Abscisic Acid Content, and Expression of rab18 Gene during the Development of Freezing Tolerance in Arabidopsis thaliana.

Treatments as diverse as exposure to low temperature (LT), exogenous abscisic acid (ABA), or drought resulted in a 4 to 5[deg]C increase in freezing tolerance of the annual herbaceous plant Arabidopsis thaliana. To correlate the increase in freezing tolerance with the physiological changes that occur in response to these treatments, we studied the alterations in water status, endogenous ABA levels, and accumulation of rab18 (V. Lang and E.T. Palva [1992] Plant Mol Biol 20: 951-962) mRNA. Exposure to LT and exogenous ABA caused only a minor decline in total water potential ([psi]w), in contrast to a dramatic decrease in [psi]w during drought stress. Similarly, the endogenous ABA levels were only slightly and transiently increased in LT-treated plants in contrast to a massive increase in ABA levels in drought-stressed plants. The expression of the ABA-responsive rab18 gene was low during the LT treatment but could be induced to high levels by exogenous ABA and drought stress. Taken together, these results suggest that the moderate increases in freezing tolerance of A. thaliana might be achieved by different mechanisms. However, ABA-deficient and ABA-insensitive mutants of A. thaliana have impaired freezing tolerance, suggesting that ABA is, at least indirectly, required for the development of full freezing tolerance.