Northeast China (NEC) is one of the most important national agricultural production bases, and its agricultural water dynamics are essential for food security and sustainable agricultural development. However, the dynamics of long-term annual crop-specific agricultural water and its crop type and climate impacts remain largely unknown, compromising water-saving practices and water-efficiency agricultural management in this vital area. Thus, this study used multi-source data of the crop type, climate factors, and the digital elevation model (DEM), and multiple digital agriculture technologies of remote sensing (RS), the geographic information system (GIS), the Soil Conservation Service of the United States Department of Agriculture (USDA-SCS) model, the Food and Agriculture Organization of the United Nations Penman–Monteith (FAO P-M) model, and the water supply–demand index (M) to map the annual spatiotemporal distribution of effective precipitation (Pe), crop water requirement (ETc), irrigation water requirement (IWR), and the supply–demand situation in the NEC from 2000 to 2020. The study further analyzed the impacts of the crop type and climate changes on agricultural water dynamics and revealed the reasons and policy implications for their spatiotemporal heterogeneity. The results indicated that the annual average Pe, ETc, IWR, and M increased by 1.56%/a, 0.74%/a, 0.42%/a, and 0.83%/a in the NEC, respectively. Crop-specifically, the annual average Pe increased by 1.15%/a, 2.04%/a, and 2.09%/a, ETc decreased by 0.46%/a, 0.79%/a, and 0.89%/a, IWR decreased by 1.03%/a, 1.32%/a, and 3.42%/a, and M increased by 1.48%/a, 2.67%/a, and 2.87%/a for maize, rice, and soybean, respectively. Although the ETc and IWR for all crops decreased, regional averages still increased due to the expansion of water-intensive maize and rice. The crop type and climate changes jointly influenced agricultural water dynamics. Crop type transfer contributed 39.28% and 41.25% of the total IWR increase, and the remaining 60.72% and 58.75% were caused by cropland expansion in the NEC from 2000 to 2010 and 2010 to 2020, respectively. ETc and IWR increased with increasing temperature and solar radiation, and increasing precipitation led to decreasing IWR in the NEC. The adjustment of crop planting structure and the implementation of water-saving practices need to comprehensively consider the spatiotemporally heterogeneous impacts of crop and climate changes on agricultural water dynamics. The findings of this study can aid RS-GIS-based agricultural water simulations and applications and support the scientific basis for agricultural water management and sustainable agricultural development.