Anionic States Research Articles

Highly Efficient n‐Doping via Proton Abstraction of an Acceptor1‐Acceptor2Alternating Copolymer toward Thermoelectric Applications

AbstractElectron transporting (n‐type) polymers are the coveted complementary counterpart to more thoroughly studied hole transporting (p‐type) semiconducting polymers. Besides intrinsic stability issues of the doped form ofn‐type polymer toward ubiquitous oxidizing agents (H2O and O2), the choice of suitablen‐dopants and underlying mechanism of doping is an open research field. Using a low LUMO,n‐type unipolar acceptor1‐acceptor2copolymer poly(DPP‐TPD) in conjunction with bulkn‐doping using Cs2CO3these issues can be addressed. A solid‐state acid‐base interaction between polymer and basic carbonate increases the backbone electron density by deprotonation of the thiophene comonomer while forming bicarbonate, as revealed by NMR and optical spectroscopy. Comparable to N‐DMBI hydride/electron transfer, Cs2CO3proton abstraction doping shifts the poly(DPP‐TPD) work function toward the LUMO. Thereby, the anionic doped state is resilient against O2but is susceptible toward H2O. Based on GIWAXS, Cs2CO3is mostly incorporated into the amorphous regions of poly(DPP‐TPD) with the help of hydrophilic side chains and has minor impact on the short‐range order of the polymer. Cs2CO3proton abstraction doping and the acceptor1‐acceptor2copolymer architecture creates a synergisticn‐doped system with promising properties for thermoelectric energy conversion, as evidenced by a remarkable power factor of (5.59 ± 0.39) × µW m−1 K−2.

A Water‐ and Base‐Stable Iminopyridine‐Based Cage That Can Bind Larger Organic Anions

AbstractCatalysis inside molecular cages and capsules has attracted an increasing amount of attention over the last decade. While many examples of the catalysis of reactions with cationic intermediates and transition states are known, those with anionic counterparts are scarce. One limiting factor is access to suitably sized cationic iminopyridine‐based cages that are stable towards water and anionic/nucleophilic guest molecules. This study aimed at identifying such suitable cages. In this full paper, we describe the journey that finally led to the synthesis of a novel iminopyridine‐based tetrahedron that can bind larger organic anions with binding constants of up to 850 M−1 in MeCN−d3/H2O=9 : 1. Importantly, it also displays stability in basic aqueous acetonitrile. Surprisingly, investigations towards catalysis of reactions with anionic transition states did not indicate rate accelerations in the presence of the cage.

Low Energy Isomers and Infrared Spectra Simulations of C4H3N, C4H4N, and C4H5N and Related Ions

The relative stability of pyrrole derivatives were investigated by applying a global minimum (GM) search for the low-lying energy structures of C4HnN (n = 3-5) clusters at neutral, anionic, and cationic states. Several low-energy structures, previously not reported, were identified. The present results reveal a preference for cyclic and conjugated systems for the C4H5N and C4H4N compounds. In particular, the structures of the cationic and neutral C4H3N species are different from the anionic ones. For the neutrals and cations, cumulenic carbon chains were found, while for the anions, conjugated open chains were obtained. Of particular relevance, the GM candidates C4H4N+ and C4H4N are different from those reported previously. For the most stable structures, infrared spectra were simulated and the main vibrational bands were assigned. Also, a comparison with available laboratory data was done aiming to corroborate with experimental detection.

Electron Attachment to DNA: The Protective Role of Amino Acids.

We have studied the effect of amino acids on the electron attachment properties of a DNA nucleobase, with cytosine as a model system. The equation of motion coupled cluster theory with an extended basis set has been used to simulate the electron-attached state of the DNA model system. Arginine, alanine, lysine, and glycine are the four amino acids considered to investigate their role in electron attachment to a DNA nucleobase. The electron attachment to cytosine in all the four cytosine-amino acid gas-phase dimer complexes follows a doorway mechanism, where the electron gets transferred from the initial dipole-bound doorway state to the final nucleobase-bound state through the mixing of electronic and nuclear degrees of freedom. When cytosine is bulk-solvated with glycine, the glycine-bound state acts as the doorway state, where the initial electron density is localized on the bulk amino acid and away from the nucleobase, thus leading to the physical shielding of the nucleobase from the incoming electron. At the same time, the presence of amino acids can increase the stability of the nucleobase-bound anionic state, which can suppress the sugar-phosphate bond rupture caused by dissociative electron attachment to DNA.

Calculated vibrational properties of pigments in protein binding sites 2: Semiquinones in photosynthetic proteins

[QA– – QA] Fourier transform infrared difference spectra have previously been obtained using purple bacterial reaction centers from Rhodobacter sphaeroides with unlabeled, 18O and 13C isotope labeled phylloquinone (PhQ, also known as vitamin K1) incorporated into the QA protein binding site (Breton, (1997), Proc. Natl. Acad. Sci. USA94 11318–11323). The nature of the bands in these spectra and the isotope induced band shifts are poorly understood, especially for the phyllosemiquinone anion (PhQ–) state. To aid in the interpretation of the bands in these experimental spectra, ONIOM type QM/MM vibrational frequency calculations were undertaken. Calculations were also undertaken for PhQ– in solution. Surprisingly, both sets of calculated spectra are similar and agree well with the experimental spectra. This similarity suggests pigment-protein interactions do not perturb the electronic structure of the semiquinone in the QA binding site. This is not found to be the case for the neutral PhQ species in the same protein binding site. PhQ also occupies the A1 protein binding site in photosystem I, and the vibrational properties of PhQ– in the QA and A1 binding sites are compared and shown to exhibit considerable differences. These differences probably arise because of changes in the degree of asymmetry of hydrogen bonding of PhQ– in the A1 and QA binding sites.

Electron Attachment to Wobble Base Pairs

We have analyzed the low-energy electron attachment to wobble base pairs using the equation of motion coupled cluster method and extended basis sets. A doorway mechanism exists for the attachment of the additional electron to the base pairs, where the initially formed dipole-bound anion captures the incoming electron. The doorway dipole-bound anionic state subsequently leads to the formation of a valence-bound state, and the transfer of extra electron occurs by mixing of electronic and nuclear degrees of freedom. The formation of the valence-bound anion is associated with proton transfer in hypoxanthine-cytosine and hypoxanthine-adenine base pairs, which happens through a concerted electron-proton transfer process. The calculated rate constant for the dipole-bound to valence-bound transition in wobble base pairs is slower than that observed in the Watson-Crick guanine-cytosine base pair.

From Benzonitrile to Dicyanobenzenes: The Effect of an Additional CN Group on the Thermochemistry and Negative Ion Photoelectron Spectra of Dicyanobenzene Radical Anions.

The negative ion photoelectron spectra of 1,2-dicyanobenzene (o-DCNB), 1,3-dicyanobenzene (m-DCNB), and 1,4-dicyanobenzene (p-DCNB) radical anions (DCNB·-), acquired through the computation of Frack-Condon (FC) factors, are presented. The FC calculations utilize harmonic frequencies and normal mode vectors derived from density functional theory at the B3LYP/aug-cc-pVQZ basis set. All the totally symmetric vibrational modes are treated with Duschinsky rotations to yield neutral DCNBs in their singlet (So) and lowest triplet (T1) states, following an electron removal from the doublet anionic ground state. For the So state, the adiabatic electron affinities (EAs) for o-, m-, and p-DCNB are 1.179, 1.103, and 1.348 eV. The EAs for the lowest T1 state in o-, m-, and p-DCNB are 4.151, 4.185, and 4.208 eV, resulting in an So-T1 energy difference (ΔEST) of 2.973, 3.082, and 2.860 eV. A vibrational analysis reveals evidence of FC activity involving ring distortion, C-N bending, and ring C═C stretching vibrational progressions in both the So and T1 states. With the detection of cyanonaphthalene (C10H7CN) and cyanoindene (C9H7CN) in the interstellar medium (ISM), our results highlight the extent to which replacing a single hydrogen on an aromatic molecule with a cyano group, C≡N, can alter the vibrational structure of the molecule/radical anion. As such, dicyano-polyaromatic hydrocarbons may be reasonably robust in the ISM, making it appealing to search for them in future interstellar detection missions.

Interplay of conformational relaxation and hydrogen bond dynamics in the excited states of fluorescent Schiff base anions.

Time resolved fluorescence spectroscopic investigation of four Schiff base anions has established that their excited state dynamics is governed by several solvent properties: polarity, viscosity and hydrogen bond donating ability. With viscous protic solvents like glycerol, fluorescence lifetimes of anions have been found to be markedly longer than those in ethanol, implying that conformational relaxation of molecules plays a key role in their nonradiative relaxation. Surprisingly, the lifetimes in less viscous aprotic solvents, like acetonitrile, are found to be even longer. The only plausible rationalization of this observation is in the light of hydrogen bond-assisted nonradiative phenomena that are operative in protic solvents. This contention draws support from a time evolution of the emission in the red end of the spectrum in low to moderately hydrogen bond donating protic solvents, with regard to an absence of such a rise time in aprotic solvents and strongly hydrogen bond donating solvents, viz., 2,2,2-trifluoroethanol. Rudimentary quantum chemical calculations provide a preliminary idea about the nature of excited state hydrogen bond redistribution involved in the process.

Enhancing anionic redox stability via oxygen coordination configurations.

Anionic redox in Li-rich cathode materials with disordered crystal structures has potential to increase battery energy density. However, capacity fading due to anionic redox-induced structural transformation hinders practical implementation. To address this challenge, it is crucial to understand the influence of the anion coordination structure on redox reversibility. By comprehensively studying the spinel-like Li1.7Mn1.6O3.7F0.3 and layered Li2MnO3 model systems, we found that tetrahedral oxygen exhibits higher kinetic and thermodynamic stability than octahedral oxygen in Li1.7Mn1.6O3.7F0.3 and Li2MnO3, effectively suppressing aggregation of oxidized anions. Electronic structure analysis showed that the 2p lone-pair states in tetrahedral oxygen lie deeper than those in octahedral oxygen. The Li-O-TM bond angle in a polyhedron is identified as a characteristic parameter to correlate anionic redox stability. TM substitutions using Co3+, Ti4+ and Mo5+ could effectively regulate the Li-O-Mn bond angle and anionic active electronic state. Our finding that anionic redox stability is influenced by the polyhedral structure offers new opportunities for designing high-energy-density Li-rich cathode materials.

Anion-π catalysis on carbon allotropes.

Anion-π catalysis, introduced in 2013, stands for the stabilization of anionic transition states on π-acidic aromatic surfaces. Anion-π catalysis on carbon allotropes is particularly attractive because high polarizability promises access to really strong anion-π interactions. With these expectations, anion-π catalysis on fullerenes has been introduced in 2017, followed by carbon nanotubes in 2019. Consistent with expectations from theory, anion-π catalysis on carbon allotropes generally increases with polarizability. Realized examples reach from enolate addition chemistry to asymmetric Diels-Alder reactions and autocatalytic ether cyclizations. Currently, anion-π catalysis on carbon allotropes gains momentum because the combination with electric-field-assisted catalysis promises transformative impact on organic synthesis.

Can anions possess bound doubly-excited electronic states?

Anions play an important role in many fields of chemistry. Many molecules possess stable anions, but these anions often do not have stable electronic excited states and the anion loses its excess electron once excited. All the known stable valence excited states of anions are singly-excited states, i.e., valence doubly-excited states have not been reported. As excited states are relevant for numerous applications, and constitute basic properties, we searched for valence doubly-excited states which are stable, i.e., exhibit energies below that of the ground state of the respective neutral molecule. We concentrated on two promising prototype candidates, the anions of the smallest endocircular carbon ring Li@C12 and of the smallest endohedral fullerene Li@C20. By employing accurate state-of-the-art many-electron quantum chemistry methods, we investigated the low-lying excited states of these anions and found that they possess several low-lying stable singly-excited states and, in particular, a stable doubly-excited state each. It is noteworthy that the found doubly-excited state of Li@C12- possesses a cumulenic carbon ring in sharp contrast to the ground and singly-excited states. The findings shed light on how to design anions with stable valence singly- and doubly-excited states. Possible applications are mentioned.

Excited-state chemistry of the nitromethane anion mediated by the dipole-bound states revealed by photofragment action spectroscopy.

We report the first experimental observation of the excited dipole-bound state (DBS) of the cryogenically cooled nitromethane anion (CH3NO2-), where the excess electron is loosely attached to the singlet or triplet neutral-core. Photofragment and photodetachment action spectra have been employed for the dynamic exploration of Feshbach resonances located even far above the electron detachment threshold, giving excitation profiles from the ground anionic state (D0) to the DBSs which match quite well with the spectral structures of the photoelectron spectra. This indicates that the electron transfer from the nonvalence orbital (of DBS) to the valence orbital (of anion) is mainly responsible for the anionic fragmentation channels, giving strong evidence for that the DBS plays a dynamic doorway-role in the anionic fragmentation reactions. Photofragment action spectra have also been obtained for the anionic clusters of (CH3NO2)2-, (CH3NO2)3-, or (CH3NO2·H2O)-, giving the relative yields of various fragments as a function of the excitation energy for each cluster. The absorption profiles of the anionic clusters exhibit substantial blue-shifts compared to the bare nitromethane anion as their ground states are much stabilized by solvation. The anionic fragmentation pattern varies among different clusters, giving essential clues for the thorough understanding of the whole anionic dynamics such as the dynamic role of the short-lived nonvalence-bound states of the clusters.

Crystal and Electronic Structures of New Two Dimensional 3-NH3-PyPbX4 Haloplumbate Materials

In this study, we explored both the crystal and electronic structures of new synthesized materials 3-NH3-PyPbX4 (X = Br, I). Both compounds are isostructural, and they crystallize in the monoclinic space group P21/c, with four formula units in the unit cell. According to the analysis of their electronic structures, both compounds are direct semiconductors with direct transitions between valence and conduction bands occurring at the k-points A, Z, and at about half of the distance between the k-points D/D1 and D1/E. An inspection of DOS reveals that, in both perovskites, the highest energy VBs are comprised mainly of electronic states of halogen anions, while the lowest states in the conduction band originate from lead orbitals. In addition, there are two flat bands composed of electronic states of carbon and nitrogen originating from the organic subsystems and presumably corresponding to the π* orbitals of 3-NH3-C5H6N cations. Both materials demonstrate a broad luminescence emission. Two mechanisms of the radiative relaxation based on either self-trapped excitons or on charge transfers between inorganic and organic subsystems are discussed.

Low‐lying states of FeSin−/0/+ (n = 1‐2) clusters from DMRG‐CASPT2 calculations

AbstractThe electronic states of FeSin−/0/+ (n = 1‐2) clusters have been investigated with DFT, CASPT2, and DMRG‐CASPT2 methods. By using relatively large active spaces, the DMRG‐CASPT2 method is found to provide highly accurate relative energies for the various relevant electronic states. Leading configurations, bond distances, harmonic vibrational frequencies, and relative energies for the low‐lying states of the title clusters are reported. Electron detachment energies for the ground states of the anionic and neutral clusters were estimated at the DMRG‐CASPT2 level. Franck‐Condon factor simulations were performed for transitions from the anionic ground state to the neutral ground state and from the neutral ground state to the cationic ground state with the purpose to produce the vibrational progressions.

Photolysis versus Photothermolysis of N2O on a Semiconductor Surface Revealed by Nonadiabatic Molecular Dynamics.

Identifying photolysis and photothermolysis during a photochemical reaction has remained challenging because of the highly non-equilibrium and ultrafast nature of the processes. Using state-of-the-art ab initio adiabatic and nonadiabatic molecular dynamics, we investigate N2O photodissociation on the reduced rutile TiO2(110) surface and establish its detailed mechanism. The photodecomposition is initiated by electron injection, leading to the formation of a N2O- ion-radical, and activation of the N2O bending and symmetric stretching vibrations. Photothermolysis governs the N2O dissociation when N2O- is short-lived. The dissociation is activated by a combination of the anionic excited state evolution and local heating. A thermal fluctuation drives the molecular acceptor level below the TiO2 band edge, stabilizes the N2O- anion radical, and causes dissociation on a 1 ps timescale. As the N2O- resonance lifetime increases, photolysis becomes dominant since evolution in the anionic excited state activates the bending and symmetric stretching of N2O, inducing the dissociation. The photodecomposition occurs more easily when N2O is bonded to TiO2 through the O rather than N atom. We demonstrate further that a thermal dissociation of N2O can be realized by a rational choice of metal dopants, which enhance p-d orbital hybridization, facilitate electron transfer, and break N2O spontaneously. By investigating the charge dynamics and lifetime, we provide a fundamental atomistic understanding of the competition and synergy between the photocatalytic and photothermocatalytic dissociation of N2O and demonstrate how N2O reduction can be controlled by light irradiation, adsorption configuration, and dopants, enabling the design of high-performance transition-metal oxide catalysts.

Charge-transfer-to-solvent states provide a sensitive spectroscopic probe of the local solvent structure around anions

ABSTRACT This computational study characterises charge-transfer-to-solvent (CTTS) states of aqueous thiocyanate anion using equation-of-motion coupled-cluster methods combined with electrostatic embedding quantum mechanics/molecular mechanics (QM/MM) scheme. Equilibrium sampling was carried out using classical molecular dynamics (MD) with standard force-fields and QM/MM ab initio molecular dynamics (AIMD) using density functional theory. The two calculations yield significantly different local structure around solvated SCN − . Because of the diffuse character of CTTS states, they are very sensitive to the local structure of solvent around the solute and its dynamic fluctuations. Owing to this sensitivity, the spectra computed using MD and AIMD based snapshots differ considerably. This sensitivity suggests that the spectroscopy exploiting CTTS transitions can provide an experimental handle for assessing the quality of force-fields and density functionals. By combining CTTS-based spectroscopies with reliable theoretical modeling, detailed microscopic information of the solvent structure can be obtained. We present a robust computational protocol for modeling spectra of solvated anions and emphasise the use of an ab initio characterization of individual electronic transitions as CTTS or local excitations.

A Carbon Is a Carbon Is a Carbon: Orbital-Free Simulations of Hydrocarbon Chemistry without Resort to Atom Types.

Semiclassical electrons (aka Lewis dots) have been a mainstay of chemists' thinking about molecular structure, polarizability, and reactivity for over a century. This utility has motivated the development of a corresponding quantitative description. Here we devise pairwise potentials that describe the behavior of valence electron pairs in hydrocarbons, including those in single, double, bridge, and bent bonds of linear, branched, and cyclic compounds, including anionic and cationic states. Beyond predicting structures and energies, the new subatomistic force field, dubbed LEWIS-B, efficiently simulates carbocation addition to a double bond and cation migration to a neighboring carbon. A crucial feature of the semiclassical electrons is variable spread, a fourth degree of freedom in addition to three Cartesian coordinates. In spontaneously adapting to different environments, the spread provides a signature of electron stability, with more contracted clouds where the electron interactions are favorable and expanded clouds where electrons are less tightly held. In addition, the pair potentials provide insight into the subtle trade-offs that govern isomerizations and reactions.

Effective Fragment Potentials for Microsolvated Excited and Anionic States.

The effective fragment potential (EFP) approach is a sophisticated hybrid approach that allows the inclusion of solvation effects when describing properties and reactivity in the condensed phase, without using empirical parameters. This work examines the performance of the EFP method when describing microsolvation in electronically excited states of neutrals and anions. The examples selected include both localized valence states, as well as diffuse nonvalence states, which represent greater challenges to conventional electronic structure methods. The equation-of-motion coupled cluster with singles and doubles (EOM-XX-CCSD) methodology has been used to provide the quantum chemical description of both the full microsolvated clusters, and the chromophoric moiety in mixed quantum/EFP calculations. We find that, when averaging over multiple configurations of microsolvated clusters, the differences between QM/EFP and full quantum results are minimal, although individual configurations often have larger errors. As expected, diffuse states have somewhat larger errors, although not significantly so. The close proximity of states leading to mixing can make QM/EFP less accurate because a change of ordering of states can occur. Other properties, such as photoelectron images and lifetimes of metastable states, are very well described for the monohydrated clusters investigated.

Observation of Cation Chromophore Photoisomerization of a Fluorescent Protein Using Millisecond Synchrotron Serial Crystallography and Infrared Vibrational and Visible Spectroscopy.

The chromophores of reversibly switchable fluorescent proteins (rsFPs) undergo photoisomerization of both the trans and cis forms. Concurrent with cis/trans photoisomerisation, rsFPs typically become protonated on the phenolic oxygen resulting in a blue shift of the absorption. A synthetic rsFP referred to as rsEospa, derived from EosFP family, displays the same spectroscopic behavior as the GFP-like rsFP Dronpa at pH 8.4 and involves the photoconversion between nonfluorescent neutral and fluorescent anionic chromophore states. Millisecond time-resolved synchrotron serial crystallography of rsEospa at pH 8.4 shows that photoisomerization is accompanied by rearrangements of the same three residues as seen in Dronpa. However, at pH 5.5 we observe that the OFF state is identified as the cationic chromophore with additional protonation of the imidazolinone nitrogen which is concurrent with a newly formed hydrogen bond with the Glu212 carboxylate side chain. FTIR spectroscopy resolves the characteristic up-shifted carbonyl stretching frequency at 1713 cm-1 for the cationic species. Electronic spectroscopy furthermore distinguishes the cationic absorption band at 397 nm from the neutral species at pH 8.4 seen at 387 nm. The observation of photoisomerization of the cationic chromophore state demonstrates the conical intersection for the electronic configuration, where previously fluorescence was proposed to be the main decay route for states containing imidazolinone nitrogen protonation. We present the full time-resolved room-temperature X-ray crystallographic, FTIR, and UV/vis assignment and photoconversion modeling of rsEospa.

Low-Energy Electron Interactions with Resveratrol and Resorcinol: Anion States and Likely Dissociation Pathways.

We report a computational study of the anion states of the resveratrol (RV) and resorcinol (RS) molecules, also investigating dissociative electron attachment (DEA) pathways. RV has well-known beneficial effects in human health, and its antioxidant activity was previously associated with DEA reactions producing H2. Our calculations indicate a valence bound state and four resonances ( to ) for that system. While the computed thermodynamic thresholds are compatible with DEA reactions producing H2 at 0 eV, the well-known mechanism involving vibrational Feshbach resonances built on a dipole bound state should not be present in RV. Our results suggest that the shallow valence bound state is expected to account for H2 elimination, probably involving / couplings along the vibration dynamics. The RS molecule is also an oxidant and a subunit of RV. Because two close-lying hydroxyl groups are found in the RS moiety, the H2-elimination reaction in RV should take place at the RS site. Our calculations point out a correspondence between the anion states of RV and RS and even between the thresholds. Nevertheless, the absence of bound anion states in RS, indicated by our calculations, is expected to suppress the H2-formation channel at 0 eV. One is led to conclude that the ethene and phenol subunits in RV stabilize the state, thus switching on the DEA mechanism producing H2.