Animal Feces Research Articles

Factors affecting contamination and infiltration of Escherichia coli K12 into spinach leaves during vacuum cooling

While it has been understood that vacuum cooling can result in bacterial infiltration into plant leaves, the details of the contamination and infiltration pathways could be explored further. We investigated contamination/infiltration pathways via experimental and modeling work wherein 1) microorganisms ( Escherichia coli strain K12) external to the vacuum cooling chamber moved into it during repressurization and deposited on surfaces; 2) moist organic matter (e.g. mud or bird or animal feces) brought in with the produce could boil during depressurization, aerosolizing microorganisms and spreading them to produce; and 3) microorganisms present on surface water infiltrated into the leaves during repressurization. For external contamination, it was not possible to draw microorganisms in aerosolized form from an adjacent chamber; however, dried cultures deposited in the inlet readily contaminated the interior of the vacuum chamber. Boiling of moist organic matter within the chamber resulted in significant redistribution and contamination of chamber surfaces. For the infiltration pathway, the quantity of microorganisms entering into spinach tissue depended on vacuum level and rate of repressurization. Experimental data and model predictions show that infiltration is greatest when repressurization is slow (3.1 log CFU/g); under rapid repressurization, little (2.4 log CFU/g) or no infiltration occurs. Over the range studied (600–900 Pa), experimental data show that the pressure level during vacuum cooling did not significantly affect infiltration rate. Model predictions are in agreement on general trends, showing a slight influence of pressure level on infiltration. The contamination and infiltration pathways investigated here can be minimized in practice, improving microbial safety of vacuum cooling processes. • Vacuum cooling affects infiltration of Escherichia coli K12 into spinach. • Bacteria-laden aerosols do not enter chamber during vacuum, but dry bacteria do. • Boiling of fecal matter may spread bacteria within chamber. • Vacuum level and repressurization rate affect bacterial infiltration. • Model predicts temperature changes and infiltration.

Optimization of coprological studies in animals with the use of homeopathic Nux vomica 6CH

Background: Etiology of various gastrointestinal dysfunctions varies from infections and infestations to consequences of emotional stress and errors in animals’ nutrition. Taking this variability of etiology and pathogenesis into account, a lot depends not only on completeness of homeopathic history taking but also on the quality of laboratory studies. In our experience, coprology studies are especially complicated when persistent gastrointestinal disorders were preceded by massive use of allopathic remedies. This sometimes necessitates repeated examinations. That is why our interest in having reliable results and early detection of latent indigestion made us look for non-invasive methods which could be easy to use in animals but at the same time could reveal latent gastrointestinal pathology in animals. Aims: The study was aimed to determine the effect of a homeopathic medication Nux Vomica 6CH on detection of latent gastrointestinal pathology in small domestic animals. Method: Coprology studies were performed simultaneously with the use of sedimentation method and Fulleborn method (modification of Scherbovich). Infestations were diagnosed and characteristics of patient digestion were recorded. Feces test detected: 1. Presence of endoparasites (helminths, protozoa and yeast-like structures); 2. State of intestinal microflora (presence of different species and their balance with each other); 3. Degree of food absorbency (presence or lack of undigested protein, carbohydrates and fat); 4. Presence of inedible inclusions; 5. Presence of cells (lymphocytes, erythrocytes, intestinal epithelium, tumor fragments). If animal feces tests were non-informative, then all medications (except vitally important) were discontinued and Nux Vomica 6CH twice a day twenty minutes prior to food intake was prescribed for 6 days (4 globules dissolved in 10 ml of water). Results: 4500 coprology tests were performed during 3 years in cats and dogs. About 10% of the total number of examined animals (449 patients) produced very little information about the state of gastrointestinal systems at the first examination. When these cases were analyzed, the following reasons were found: long-term use of strong drugs, significant weakening of body immune system. As a result diagnostic tests were of very little value. These animals were treated by Nux Vomica 6CH for 6 days and then repeated feces test was performed. This produced a more informative picture of the state of gastrointestinal system and enabled to determine etiology and pathogenesis of the animal condition and prescribe necessary treatment. Conclusion. In such a way, Nux Vomica 6CH homeopathic remedy promoted effective optimization of coprology studies in animals. The suggested scheme of use for Nux Vomica 6CH significantly improves feces test quality. This in turn reduces time needed to choose strategy and tactics of treatment of small domestic animals with different chronic diseases.

A Strong Evidence Outbreak of Salmonella Enteritidis in Central Italy Linked to the Consumption of Contaminated Raw Sheep Milk Cheese.

Salmonellosis is the second most commonly reported gastrointestinal infection in humans after campylobacteriosis, and an important cause of foodborne outbreaks in the EU/EEA. The vast majority (72.4%) of the salmonellosis foodborne outbreaks reported in EU in 2019 were caused by Salmonella Enteritidis, even if their total number due to this serovar decreased. In spring 2020, a foodborne outbreak of S. Enteritidis occurred in the Marche region (Central Italy), involving 85 people. The common exposure source was a cheese, pecorino “primo sale”, produced with raw sheep milk. The cheese batches were produced by two local dairies, with a livestock production facility, also including a sheep farm, being part of one dairy. Bacteriological analysis of samples collected allowed the detection of S. Enteritidis in animal faeces, environmental samples, raw-milk bulk tanks and milk taken from single animals. These data confirm that, despite the scarce scientific evidence, S. Enteritidis can infect sheep and be shed into the animals’ milk. Hence, this is a real risk for public health when unpasteurized milk is used in production of such cheese. The present paper describes the results of the investigations conducted to clarify this outbreak.

Partitioning and sources of microbial pollution in the Venice Lagoon

Microbial pollutants are a serious threat to human and environmental health in coastal areas. Based on the hypothesis that pollution from multiple sources may produce a distinct microbial signature and that microbial pollutants seem to distribute between a free-living and a particle-attached fraction, we investigated the occurrence, partitioning and sources of microbial pollutants in water samples collected in the Venice Lagoon (Italy). The area was taken as a case study of an environment characterized by a long history of industrial pollution and by growing human pressure. We found a variety of pollutants from several sources, with sewage-associated and faecal bacteria accounting for up to 5.98% of microbial communities. Sewage-associated pollutants were most abundant close to the city centre. Faecal pollution was highest in the area of the industrial port and was dominated by human inputs, whereas contamination from animal faeces was mainly detected at the interface with the mainland. Microbial pollutants were almost exclusively associated with the particle-attached fraction. The samples also contained other potential pathogens. Our findings stress the need for monitoring and managing microbial pollution in highly urbanized lagoon and semi-enclosed systems and suggest that management plans to reduce microbial inputs to the waterways should include measures to reduce particulate matter inputs to the lagoon. Finally, High-Throughput Sequencing combined with computational approaches proved critical to assess water quality and appears to be a valuable tool to support the monitoring of waterborne diseases.

From the One Health Perspective: Schistosomiasis Japonica and Flooding.

Schistosomiasis is a water-borne parasitic disease distributed worldwide, while schistosomiasis japonica localizes in the People’s Republic of China, the Philippines, and a few regions of Indonesia. Although significant achievements have been obtained in these endemic countries, great challenges still exist to reach the elimination of schistosomiasis japonica, as the occurrence of flooding can lead to several adverse consequences on the prevalence of schistosomiasis. This review summarizes the influence of flooding on the transmission of schistosomiasis japonica and interventions responding to the adverse impacts from the One Health perspective in human beings, animals, and the environment. For human and animals, behavioral changes and the damage of water conservancy and sanitary facilities will increase the intensity of water contact. For the environment, the density of Oncomelania snails significantly increases from the third year after flooding, and the snail habitats can be enlarged due to active and passive diffusion. With more water contact of human and other reservoir hosts, and larger snail habitats with higher density of living snails, the transmission risk of schistosomiasis increases under the influence of flooding. With the agenda set for global schistosomiasis elimination, interventions from the One Health perspective are put forward to respond to the impacts of increased flooding. For human beings, conducting health education to increase the consciousness of self-protection, preventive chemotherapy for high-risk populations, supply of safe water, early case finding, timely reporting, and treating cases will protect people from infection and prevent the outbreak of schistosomiasis. For animals, culling susceptible domestic animals, herding livestock in snail-free areas, treating livestock with infection or at high risk of infection, harmless treatment of animal feces to avoid water contamination, and monitoring the infection status of wild animals in flooding areas are important to cut off the transmission chain from the resources. For the environment, early warning of flooding, setting up warning signs and killing cercaria in risk areas during and post flooding, reconstructing damaged water conservancy facilities, developing hygiene and sanitary facilities, conducting snail surveys, using molluscicide, and predicting areas with high risk of schistosomiasis transmission after flooding all contribute to reducing the transmission risk of schistosomiasis. These strategies need the cooperation of the ministry of health, meteorological administration, water resources, agriculture, and forestry to achieve the goal of minimizing the impact of flooding on the transmission of schistosomiasis. In conclusion, flooding is one of the important factors affecting the transmission of schistosomiasis japonica. Multi-sectoral cooperation is needed to effectively prevent and control the adverse impacts of flooding on human beings, animals, and the environment.

Dynamics of Microbial Shedding in Market Pigs during Fasting and the Influence of Alginate Hydrogel Bead Supplementation during Transportation

The shedding of foodborne pathogenic bacteria by food-animals can be affected by multiple factors, such as animal health, diet, stress, and environmental conditions. The practices that come with transport involve fasting, handling, mixing with unfamiliar pigs, and fluctuating temperatures. These practices, especially fasting and transport, can increase the microbial load in the feces of animals. The use of alginate hydrogels is a novel delivery system that can be a potential food safety intervention during transport to induce satiety and provide electrolytes to the animal’s system. This study sought to observe microbial shedding as affected by fasting and hydrogel bead supplementation during transport. Sixty market pigs were subjected to a 12 h fasting period and an additional 4 h transport period, in which a treatment group was fed hydrogel beads and a control group was not. Sampling points were before fast (BF), before transport (BT), and after transport (AT). Fecal samples were collected from every animal at each sampling point. Results from this study showed a significant increase in the concentrations of both Enterobacteriaceae and Escherichia coli between the before fast (BF) and after transport (AT) sampling points. However, no difference (p > 0.05) was found between the treatment (hydrogel) and control (no hydrogel) during transport. Moreover, no significant difference was found in the prevalence of Salmonella and E. coli O157:H7 at the three different sampling points, or between the treatment and control groups.

Quantitative evaluation of zinc metal in meadows and ruminants for health assessment: implications for humans.

Heavy metal pollution in soil, forage, and animals is serious concern nowadays. Current research was conducted in Sargodha to find out the relationship of animals related to the forages and soil pollution. Three sites were selected with three different treatments; site I irrigated with ground water, site II irrigated with the canal water, and site III irrigated with the wastewater. Samples of soil, forage, and animals (blood, hair, feces) were collected from selected sites and were analyzed for metal analysis using atomic absorption spectroscopy. Results indicated that Zn in soil ranged from 24.12 to 37.39mg/kg; forage, 31.98-44.47mg/kg; blood of animals, 1.49-2.72mg/L; hair of animals, 1.37-2.41mg/kg; and feces of animals, 1.06-2.97mg/kg. The concentration of zinc in soil and forage was less than permissible limit, but concentration in blood of animals was greater than critical limit suggesting the presence of metal. Bio-concentration factor indicated that metal was accumulated in forages growing at irrigated site. HRI concentration (2.024mg/kg/day) suggests the accumulation of zinc in animal tissues. Pollution load index and enrichment factor were within the range.

Freeze-dried Nannochloropsis oceanica biomass protects eicosapentaenoic acid (EPA) from metabolization in the rumen of lambs

Eicosapentaenoic acid (EPA) from freeze-dried biomass of Nannochloropsis oceanica microalgae resists ruminal biohydrogenation in vitro, but in vivo demonstration is needed. Therefore, the present study was designed to test the rumen protective effects of N. oceanica in lambs. Twenty-eight lambs were assigned to one of four diets: Control (C); and C diets supplemented with: 1.2% Nannochloropsis sp. oil (O); 12.3% spray-dried N. oceanica (SD); or 9.2% N. oceanica (FD), to achieve 3 g EPA /kg dry matter. Lambs were slaughtered after 3 weeks and digestive contents and ruminal wall samples were collected. EPA concentration in the rumen of lambs fed FD was about 50% higher than lambs fed SD or O diets. Nevertheless, the high levels of EPA in cecum and faeces of animals fed N. oceanica biomass, independently of the drying method, suggests that EPA was not completely released and absorbed in the small intestine. Furthermore, supplementation with EPA sources also affected the ruminal biohydrogenation of C18 fatty acids, mitigating the shift from the t10 biohydrogenation pathways to the t11 pathways compared to the Control diet. Overall, our results demonstrate that FD N. oceanica biomass is a natural rumen-protected source of EPA to ruminants.

Taxonomic and biological characterization and predatory activity of four nematophagous fungi isolates of Arthrobotrys species from Tapachula, Chiapas, Mexico

ABSTRACT A batch of nematophagous fungi (NF), isolated from soil and animal faeces at Tapachula, Chiapas, Mexico, was identified through morphological methods and molecular tools. Additionally, the fungi were biologically characterised through their in vitro predatory capability against the free-living nematode Panagrellus redivivus. Molecular identification of nine isolates was achieved by amplifying the 18S, 5.8S and 28S regions using ITS5 and ITS4 oligonucleotides, followed by sequencing and aligning through BLAST. Only species of Arthrobotrys genus: A. oligospora, A. conoides, A. arthrobotryoides and A. musiformis were found. The in vitro bioassay revealed a large variability in the predatory capabilities of the different isolates. The isolate Z1-1-2 of A. arthrobotryoides showed the highest nematode reduction (NR) from 822.8 (± 169.5) to only 51.4 (± 35.2) = 93.7% NR; in contrast A. oligospora (isolate Z3-2-2) showed the lowest NR from 548.5 (± 66.6) to 234.2 (± 123.6) = 57.2% Genotyping analysis corroborated the morphological identification. The comparison of sequences with the NCBI sequences showed a close phylogenetic relationship. A phylogenetic tree was generated to compare its phylogenetic relationship with other strains reported in the NCBI. The NF isolated could be potential candidates for future studies on the biological control of nematodes.

Sanitary parasitological and sanitary–bacteriological condition of the soil in the astrakhan region

This article analyzes the sanitaryparasitological and sanitarybacteriological state of the soil of the Astrakhan region for 2015 to 2019. In total, 7587 soil samples taken from various environmental objects were studied, and 18.197 studies have been performed. Of the samples, 333 (4.4%) samples did not meet the hygiene standards. For parasitic purity, 4566 (60.2%) soil samples were examined, and 9132 (50.2%) studies have been performed. The largest number of soil samples were collected and examined in 2015 and 2016, which amounted to 943 (20.7%) in 2015 and 1046 (22.9%) in 2016. The number of samples that do not meet hygienic standards was 62 (6.6%) in 2015 and 91 (8.7%) in 2016. In 2015, the positive findings were helminthiasis caused by unfertilized eggs of Ascaris lumbricoides (4 [0.5%]), eggs of Toxocara canis (37 [3.9%]), and larvae of Strongyloides stercoralis (21 [2.2%]). For microbiological indicators, the largest number of soil samples were collected and examined in 2019 and amounted to 694 (23.0%), of which positive findings in the form of common coliform bacteria of Escherichia coli amounted to six (0.9%). Studies for bacteriological indicators in 2016 have used 662 (21.9%) samples, which is 0.9 times less than the samples taken in 2019. The sanitary condition of the soil of the Astrakhan region remains stably tense, as evidenced by positive findings in the form of eggs and larvae of helminths, as well as pathogenic bacteria of Escherichia coli. The presence of ascarid eggs, toxocars, and strongylid larvae in the soil indicates contamination of these objects with the feces of infected people and animals. The presence of coliform bacteria of Escherichia coli in the soil also indicates contamination with the feces of sick people.

An Epidemiological and Diagnostic Study of Cyclospora Cayetanensis Parasite in Anbar Province - Iraq

This study was conducted to find out the prevalence of Cyclospora cayetanensis in humans, animals, and vegetables in Anbar province-Iraq. The parasite was diagnosed by examining the samples microscopically, by examining 560 stool samples (262 males and 298 females) that were collected from patients attending hospitals (Ramadi, Fallujah, and Haditha), and its health centers. The results showed that the total infection rate was 12.1%, and no significant difference was recorded between the infection of both sexes. The highest rate of infection was 25.8% in the age group (1-9) years, with significant differences (P ≤0.05) from the rest of the age groups. The infection rate in the rural was 14.5% higher than in the urban 8.4%. The highest rate was recorded at 41.5% in April and the lowest at 2.5% in November, while the summer months did not record any infections. The study also included an examination of 188 samples of animal feces (48 sheep, 50 cows, 47 goats, and 43 dogs), the parasite was not diagnosed in any of the examined animals. This is the first study in the country to investigate the parasite in goats. The study also included the investigation of the C. cayetanensis parasite in five types of vegetable leaves (garden cress, radish, leek, green onions, and purslane). Where it is observed the presence of Oocyst in vegetables washing water by a percentage (6, 7.8, 7.2, 4.4, and 3.2) Oocyst/liter respectively.

Identification of antimicrobial resistance genes and drug resistance analysis of Escherichia coli in the animal farm environment

BackgroundAntibiotics are widely used to prevent and control diseases and infection for reducing the morbidity and mortality of animals, because of the high-density stocking in modern food-source animal production. However, the overuse of antibiotics in animal farms results in antimicrobial resistance (AMR), and causes public health issues through the food chain. Therefore, the AMR analysis of the farms and their surrounding environments is great significance to public health. MethodsTo investigate the distribution of AMR genes and analyze the antimicrobial drug resistance of Escherichia coli in feces and surrounding soil of animal farm in Zhanjiang, China. E. coli was isolated and identified through PCR, and the distribution of 21 common antimicrobial drug resistance genes were also detected by using PCR. The minimum inhibitory concentration (MIC) of the isolated E. coli strains against 22 drugs was detected using the broth double dilution method. ResultsThe results showed that the different AMR genes were detected in both feces and soil, and the detection rate of each AMR gene was higher than 50%. The detection rate of most AMR genes in feces was higher than those in soil. Besides, the isolated 88 strains of E. coli were resistant to 22 kinds of antimicrobial drugs. The highest drug resistance rate (100%) was observed for amoxicillin, colistin, doxycycline and oxytetracycline, and the drug resistance rate of cephalosporins was less than 10%. The drug resistance rate of the isolated strains of E. coli from feces was higher than those from soil, however, in both of feces and soil, most of the isolated strains of E. coli from (77.55% of isolates from feces, 79.49% of isolates from soil and total 78.41%) showed multi-drug resistance (resistant to 15−22 drugs). ConclusionOverall, the detection rate of AMR genes in feces and soil from hog farms was high, and the isolated strains of E. coli from both feces and soil showed multi-drug resistance. Also, the results showed that the AMR genes and drug resistance in the feces and soil from the hog farms are similar. These findings suggested that the AMR genes could be transmitted horizontally from the animal feces to surrounding environments of farms. Therefore, it is urgent need to strengthen the monitoring and guide the rational use of antimicrobial drugs in the hog industry of Zhanjiang, China.

Rhodococcus in foal, from diagnosis to treatment: Case report

The present work reports a case of a foal affected by Rhodococcus equi, an optional intracellular gram-positive pleomorphic cocobacillus, which, when eliminated with the feces of infected animals, in the soil becomes a potential pathogen, capable of causing mainly piogranulomatous bronchopneumonia. The animal, a 23-day-old Brazilian equestrian foal, was sent to the veterinary hospital with hyperthermia, increased heart and respiratory rates, crackle in tracheal auscultation, loss of appetite and prostration. After hematological, ultrasound, radiographic examinations, and collection of tracheal lavages for culture and PCR, the definitive diagnosis of rhodococcosis was obtained, which is a bacterial disease that mainly affects foals, has a worldwide distribution and has a great economic impact on equine culture. Based on the results, treatment with azithromycin, rifampin, flunixin meglumine, sucralfate, ranitidine hydrochloride and amoxicillin with clavulanate was instituted, associated with nebulization with acetylcysteine diluted to 0.9% sodium hydrochloride solution. After a few weeks, there was no evolution in the results of the ultrasound and radiographic exams, however the hematological exams were within the reference levels, there was a significant clinical improvement, and the animal was discharged. It is noteworthy that early diagnosis was essential for the effectiveness of treatment and remission of clinical signs. Keywords: rhodococcosis; foals; rhodococcus equi.

Contextual Determinants of General Household Hygiene Conditions in Rural Indonesia.

Household hygiene is critical to prevent pathogen transmission at the household level. Assessing household hygiene conditions and their determinants are needed to improve hygiene conditions, especially in rural and less developed areas where the housing conditions are relatively worse than they are in urban areas. This study used data from 278 household interviews and observations in rural areas in the district of East Sumba, province East Nusa Tenggara, Indonesia. The data were analyzed using statistical methods. In general, the household hygiene conditions in the study need to be improved. The main potential sources of pathogen transmission were from the surrounding environment, i.e., non-permanent floor and garbage, and personal hygiene, i.e., handwashing facilities with water and soap were only observed in the homes of four out of ten respondents. The presence of livestock roaming freely in the house’s yard was another source of contamination. Easy access to water and wealth significantly influenced the hygiene conditions. Implementing low-cost interventions, i.e., cleaning the house of garbage and animal feces and cleaning nails, should be the priority in immediate intervention, while providing easier access to water supply, especially during the dry season, could be a long-term intervention. This paper also argues that analyzing household hygiene conditions or practices should be complemented by analyzing contextual determinants of the hygiene conditions or practices, so that we can develop more precise intervention by considering the local or household context.

AN ECONOMIC STUDY OF POST-HARVEST LOSSES FOR WHEAT FARMERS IN IRAQ BAGHDAD GOVERNORATE –CASE STUDY-

The research aimed to measure the loss and waste of wheat farms, using exploratory and confirmatory factor analysis. Although, loss has become a frightening reality due to the loss of large quantities of food produced by humans for human consumption, so Iraq possesses material capabilities, natural resources, and human beings, it is not self-sufficient, and the reason is the low yield per dounm of wheat, as the productivity rate ranged to 650 kg / dounm for the period 1990-2019. The one of the most important reasons for the decline in productivity is the loss and waste of wheat of post- harvest. And to identify the most important factors that work to reduce post-harvest wheat losses for wheat farmers at Baghdad, by use exploratory and confirmatory factor analysis. So the results indicated that the most important factors that work to reduce losses are the duration of the crop remaining in the field after harvesting until the date of marketing it to the central silos by exposing the crop to environmental hazards, as well as attacking birds, rodents, stray animal feces, and what mixes of grains with soil. The correlation is positive and strong, at a rate of 97%, and the distance to the silo to which the crop is marketed and the logistical operations associated with it, such as crop transportation vehicles that do not comply with the conditions for the proper transportation of grains, as most of them are without cover and there are gaps and holes in them that facilitate the fall of the grains on the road is 80%, and it has a direct relationship as well. Also farmers could be increase their production without increasing economic resources by preserving wheat from loss and waste of post- harvest.

Spread of airborne antibiotic resistance from animal farms to the environment: Dispersal pattern and exposure risk

Animal farms have been considered as the critical reservoir of antibiotic resistance genes (ARGs) and antibiotic resistant bacteria (ARB). Spread of antibiotic resistance from animal farms to the surrounding environments via aerosols has become a growing concern. Here we investigated the dispersal pattern and exposure risk of airborne ARGs (especially in zoonotic pathogens) in the environment of chicken and dairy farms. Aerosol, dust and animal feces samples were collected from the livestock houses and surrounding environments (upwind and downwind areas) for assessing ARG profiles. Antibiotic resistance phenotype and genotype of airborne Staphylococcus spp. was especially analyzed to reveal the exposure risk of airborne ARGs. Results showed that airborne ARGs were detected from upwind (50 m/100 m) and downwind (50 m/100 m/150 m) air environment, wherein at least 30% of bacterial taxa dispersed from the animal houses. Moreover, atmospheric dispersion modeling showed that airborne ARGs can disperse from the animal houses to a distance of 10 km along the wind direction. Clinically important pathogens were identified in airborne culturable bacteria. Genus of Staphylococcus, Sphingomonas and Acinetobacter were potential bacterial host of airborne ARGs. Airborne Staphylococcus spp. were isolated from the environment of chicken farm (n = 148) and dairy farm (n = 87). It is notable that all isolates from chicken-related environment were multidrug-resistance (>3 clinical-relevant antibiotics), with more than 80% of them carrying methicillin resistance gene (mecA) and associated ARGs and MGEs. Presence of numerous ARGs and diverse pathogens in dust from animal houses and the downwind residential areas indicated the accumulation of animal feces origin ARGs in bioaerosols. Employees and local residents in the chick farming environment are exposed to chicken originated ARGs and multidrug resistant Staphylococcus spp. via inhalation. This study highlights the potential exposure risks of airborne ARGs and antibiotic resistant pathogens to human health.

Detection of Mycobacterium ulcerans DNA Using Real-Time PCR.

Mycobacterium ulcerans is a slow-growing environmental bacterium that causes a severe skin disease known as Buruli ulcer. Rapid detection of M. ulcerans in clinical specimens is essential for ensuring early diagnosis and prevention of disability. This chapter describes a real-time PCR method for the direct detection of M. ulcerans from a variety of clinical and environmental samples (Fig. 1). Methods for the extraction of DNA from swabs, fresh tissue biopsies, and fixed tissue sections, which are the most common types of specimens used in the diagnosis of Buruli ulcer, are described in Chapter 6 . Chapter 7 describes the appropriate DNA extraction methods for environmental samples including soil, detritus, water, animal feces, and insects, as reliable detection of M. ulcerans in the environment is becoming increasingly important for understanding the ecology and transmission of this elusive pathogen.

Organic Constituents and Biota in the Urban Atmospheric Solid Aerosol: Potential Effects on Urban Soils

The main components of solid atmospheric aerosol are soil and rock particles raised from the earth’s surface by wind erosion, and primary biological aerosol particles. In the composition of atmospheric aerosol, many pollutants, both mineral and organic, appear in areas with intensive human activity. Summer dust (solid atmospheric fallouts) that fell out of atmosphere was collected at two sites in Moscow (the territory of the Leo Tolstoy Museum-Estate in Khamovniki and the Botanical Garden of the Biological Faculty of Moscow State University). Morphological and microbiological studies were carried out in order to characterize the composition of the organic part of urban solid atmospheric fallouts and its possible impact on soils and the urban ecosystem as a whole. It has been found that the composition of the organic part of the samples was identical and included: the representatives of aeroplankton and other particles of biological origin, and also fragments of oil films, plastic fibers, carbon particles, etc., which indicated the hydrocarbon and microplastic pollution brought from the atmosphere. The composition of the studied groups of microorganisms in atmospheric fallouts and in urban soils was similar and indicated close ecological links between urban dust aerosol and soils. The biomass of the studied groups of microorganisms of atmospheric solids was dominated by fungi, many of which are potentially pathogenic and allergenic organisms. Apparently, atmospheric solid aerosols are carriers of microbiological pollution associated with animal feces in the city. The presence of such particles in the air indicates insufficient soil activity as a “bacterial filter”.

Inactivation and risk control of pathogenic microorganisms in municipal sludge treatment: A review.

The rapid global spread of coronavirus disease 2019 (COVID-19) has promoted concern over human pathogens and their significant threats to public health security. The monitoring and control of human pathogens in public sanitation and health facilities are of great importance. Excessive sludge is an inevitable byproduct of sewage that contains human and animal feces in wastewater treatment plants (WWTPs). It is an important sink of different pollutants and pathogens, and the proper treatment and disposal of sludge are important to minimize potential risks to the environment and public health. However, there is a lack of comprehensive analysis of the diversity, exposure risks, assessment methods and inactivation techniques of pathogenic microorganisms in sludge. Based on this consideration, this review summarizes the control performance of pathogenic microorganisms such as enterovirus, Salmonella spp., and Escherichia coli by different sludge treatment technologies, including composting, anaerobic digestion, aerobic digestion, and microwave irradiation, and the mechanisms of pathogenic microorganism inactivation in sludge treatment processes are discussed. Additionally, this study reviews the diversity, detection methods, and exposure risks of pathogenic microorganisms in sludge. This review advances the quantitative assessment of pathogenic microorganism risks involved in sludge reuse and is practically valuable to optimize the treatment and disposal of sludge for pathogenic microorganism control.

Contamination of environmental objects by helminth-protozoan infestations in Astrakhan region. Аnalysis of activities of “Сenter for hygiene and epidemiology in Astrakhan region” for 2011–2020

Objective. To study and analyze the contamination of environmental objects in the Astrakhan Region (by the example of soil, water, and washout samples from solid household surfaces) based on the results of laboratory studies of the Center for Hygiene and Epidemiology in the Astrakhan Region for 20112020.
 Materials and methods. The work was carried out on the basis of the Laboratory of Bacteriological and Parasitological Research of the Center for Hygiene and Epidemiology in the Astrakhan Region and in the laboratories of the Branches of the Center for Hygiene and Epidemiology in the Astrakhan Region in 20112020.
 As a whole, during the analyzed period, the laboratory and its branches conducted laboratory studies of 79 742 samples taken from various environmental objects, and 94 495 studies were performed. The number of samples that do not meet the hygiene standards was 1.01 % (806 samples).
 Results. The objects of sampling for the study of their parasitic purity were water, soil and wash-out from solid household surfaces.
 The share of water samples in the structure of all the studied samples taken from environmental objects was 7.3 % (5858 samples), of which 172 samples were contaminated with pathogens of parasitic diseases, the extent of invasion was 2.9 %.
 The structure of positive findings in the water samples was represented by 6 nosological forms of helminths 88.0 % (154 samples) and 3 nosoforms of protozoa 12.0 %.
 The share of the studied soil samples in the overall structure of sanitary and parasitological studies of the environment was 11.2 % (8895 samples). The number of unsatisfactory samples in the structure of all positive findings revealed during the study of soil, water and washouts during the analyzed period was 70.4 % (625 samples). The total soil contamination for the period of 20112020 was 7.0 % (625 samples).
 In most cases, helminth eggs and larvae were detected 99.8 % (624 samples). The proportion of pathogenic protozoan cysts detected in the soil was 0.2 % (1 sample).
 In addition to water and soil samples, the washout samples, taken from solid household surfaces were studied 81.5 % (64989 samples), of which 0.01 % (9 samples) were unsatisfactory.
 All positive findings in the washout samples were represented by two nosological forms of helminthiasis: Enterobius vermicularis eggs 0.012 % (8 samples) and teniid oncospheres 0.002 (1 sample).
 Conclusions. The presence of helminth eggs and cysts of pathogenic intestinal protozoa in the studied soil and water samples indicates contamination of these objects with the feces of infected persons and/or contamination by sewage runoff resulting from various accidents. The presence of toxocara eggs and strongylid larvae in the soil and water indicates contamination of these objects with the feces of infected animals (dogs, cats). The presence of positive findings in wastewater samples indicates poor-quality disinfection of these objects. The presence of contact helminth eggs in the studied samples of washout samples taken from hard surfaces indicates direct contact of infected persons with these samples.