Uniformly distributed white noise is often the desirable noise assumption for partly calibrated subarray-based radar systems. However, this assumption may practically not always be guaranteed. In this study, the angle estimation problem of the partly calibrated multi-subarray-based bistatic multiple-input multiple-output radar, where intersubarray calibration errors and non-uniform noise coexist, is considered. In addition, an inverse transformation-based enhanced Capon method is proposed to adapt to such a challenging situation. First, the noise-free covariance matrix of each subarray is obtained by formulating an imaginary selecting matrix following a covariance matrix invariance approach which performs an inverse transformation of the matrix. Thus, the noise identities at the different antennas of the subarray are estimated as nuisance parameters at the expense of the target signals. Second, assuming that the calibration within each subarray is well configured such that the steering vector of a subarray is known, knowledge is required of the intersubarray calibration mismatches. To this, a high-resolution Capon estimator which applies a combination of root and local searching orientation of the antenna arrays is implemented. The proposed approach resolves the intersubarray calibration errors and ultimately leads to obtaining the joint direction of departure and direction of arrival estimation of the target. Evidence of the proposed algorithm's validity and effectiveness over existing methods is demonstrated in numerical simulations under varying conditions.