This research will develop a groundwater irrigation system performance index model with the aim of identifying the groundwater irrigation system performance index; this information can be used by stakeholders to determine management steps. The research location is in Gunungkidul Regency and includes surrounding areas — acknowledging that the karst aquifer has complex characteristics and non-karst aquifer, namely high heterogeneity as a result of the formation of a groundwater flow system through fractures which eventually becomes completely underground runoff. Screening for the variables was carried out using the smart-PLS (Partial Least Square) tool, which was then analyzed using the GRG (Generalized Reduced Gradient) method which is useful for solving non-linear equations. In this research, it examines the physical aspects, social aspects and management aspects as variables. The groundwater irrigation system performance index model examines 3 (three) variables, namely physical aspects, social aspects, and management aspects, then 11 (eleven) dimensions and 42 (forty two) indicators. The analysis using PLS SEM using smart PLS tools determined that the 3 (three) variables, 11 (eleven) dimensions and 30 (thirty) indicators are interrelated and effective. Whereas by using GRG (Generalized Reduced Gradient) analysis with the solver tool in Microsoft Excel, the most influential weights were obtained from the physical aspects, namely physical infrastructure (0.5782), geological conditions (0.2311), water quality (0.1286) and recharge area conditions (0.0475); the social aspects that obtained the most influential weight are socio-cultural (0.7471) and economy (0.2529); the management aspects that obtained the most influential weights are budgeting (0.2534), plant productivity (0.2270), WUA organizational conditions (0.2090), JIAT management organizational conditions (0.1987) and spatial planning directives (0.0674). In general, the weight of the influence of groundwater irrigation performance for these three aspects is 0.6686 physical aspects, 0.0856 social aspects and 0.2458 management aspects which are formulated into a performance index model for groundwater irrigation systems "Kautsar", namely IL = 0.6686 physical IL + 0.0856 social IL + 0.2458 IL management. For development, further research is needed on the performance index model of the groundwater irrigation system using Geography Information System (GIS) and a software application on android, iOS, or windows operation systems. A groundwater irrigation system performance index that consists of these three aspects is unique and has never been assembled in previous studies; it conveniently allow the user to determine survey results immediately.