In the process of tunnel construction, the bias of layered rock mass tunnels has always been a prominent problem that troubles the construction and safe operation of tunnels. In this paper, a comprehensive method that combines monitoring technology and discrete element (3DEC) numerical simulation is proposed to analyze the deformation characteristics of the surrounding rock in the layered rock tunnel and the deformation law of the bias tunnel. The results indicate that the tunnel surrounding rock deformation in the study area showed the characteristics of bias. Based on the bias mechanism, the surrounding rock deformation law, the construction deformation control, and the optimization measures of layered rock mass in the bias tunnel were studied by means of combining monitoring technology with discrete element (3DEC) numerical simulation. Based on the research results, appropriate methods for controlling the deformation of the surrounding rock of the tunnel with comprehensive consideration of the anchor rod length, anchor rod angle, and anchor rod layout spacing were proposed. The method proposed in this paper could visually reveal the deformation characteristics of the surrounding rock of layered rock tunnels and the deformation law of bias tunnels. It could also better solve the problem of deformation control in the tunnel construction process. This approach provides a novel idea for special layered rock mass tunnel bias evaluation and deformation control parameter optimization and serves as a valuable reference for analogous engineering cases through engineering case analysis.