Here we propose a not pupil-dependent microsaccades tracking technique and a novel detection method. We present a proof of concept for detecting microsaccades using a non-contact laser-based photonic system recording and processing the temporal changes of speckle patterns scattered from an eye sclera. The data, simultaneously recorded by the speckle-based tracker (SBT) and the video-based eye tracker (Eyelink), was analyzed by the frequently used detection method of Engbert and Kliegl (E&K) and by advanced machine learning detection (MLD) techniques. We detected 93% of microsaccades in the SBT data out of microsaccades detected in the Eyelink data with the E&K method. By utilizing MLD, a precision of 86% was achieved. The findings of our study demonstrate a potential improvement in measuring tiny eye movements, such as microsaccades, using speckle-based eye tracking and, thus, an alternative to video-based eye tracking for detecting microsaccades.