Analysis Of Functional Brain Networks Research Articles

Functional brain network analysis using electroencephalography in late-onset Lennox–Gastaut syndrome

ObjectiveWe aimed to explore the clinical characteristics and functional network properties of patients with late-onset Lennox–Gastaut syndrome (LGS). MethodsLate-onset LGS was defined by the appearance of LGS features after 8 years of age. We reviewed the medical charts of 9 patients with late-onset LGS, and performed electroencephalography connectivity analysis using graph theory. We assessed the clustering coefficient (CC) and characteristic path length (CPL), which are common basic measures of functional networks that represent local segregation and global integration. The characteristics and brain parameters of late-onset LGS were compared with a typical age-onset LGS group. ResultsLate onset LGS subjects were older than typical age onset LGS at the time of testing, but otherwise there were no significant differences in clinical characteristics. The late-onset group showed higher median CC values in the alpha (p = 0.045) and beta (p < 0.001) bands over brain regions implicated in cognitive processing. There were no significant differences in CPL between the LGS groups. ConclusionsHigher clustering coefficient values, in alpha/beta bands over brain regions implicated in cognitive processing, are consistent with increased cognitive network segregation in late onset LGS compared to typical age-onset LGS. Given network segregation is a normal aspect of brain maturation, these results imply that this process is less disturbed when the LGS process begins later in childhood.

Graph analysis of functional brain networks under varying working memory load: An EEG-based minimum spanning tree approach

Conventional graph theory approach implemented in prior studies to understand brain topology during performance of cognitive tasks is biased and limits comparison of results across studies. This study employed minimum spanning tree (MST) analysis, an unbiased approach, to quantify changes in brain network organization under varying working memory (WM) load. We used 28-channel electroencephalography dataset of 26 subjects performing cognitive (0-, 2- and 3-back) tasks. We computed functional connectivity across channels using weighted phase lag index (wPLI) in multiple frequency bands and constructed MSTs of brain networks under varying WM conditions. Results reveal 0- back had significantly higher parietal alpha wPLI, lower frontal theta wPLI and lower central theta wPLI, than other conditions. In theta band, we observed more star-like topology in 0- back condition than 2- back or 3- back conditions. Our findings suggest sensitivity of these metrics to alterations in brain network topology under varying cognitive demand.

Brain connectivity patterns derived from aging-related alterations in dynamic brain functional networks and their potential as features for brain age classification.

Recent studies have demonstrated that the analysis of brain functional networks (BFN) is a powerful tool for exploring brain aging and age-related neurodegenerative diseases. However, investigating the mechanism of brain aging associated with dynamic BFN is still limited. The purpose of this study is to develop a novel scheme to explore brain aging patterns by constructing dynamic BFN using resting-state functional magnetic resonance imaging (rs-fMRI) data. A dynamic sliding-windowed non-negative block-diagonal representation (dNBDR) method is proposed for constructing dynamic BFN, based on which a collection of dynamic BFN measures are suggested for examining age-related differences at the group level and used as features for brain age classification at the individual level. The experimental results reveal that the dNBDR method is superior to the sliding time window with Pearson correlation (SWPC) method in terms of dynamic network structure quality. Additionally, significant alterations in dynamic BFN structures exist across the human lifespan. Specifically, average node flexibility and integration coefficient increase with age, while the recruitment coefficient shows a decreased trend. The proposed feature extraction scheme based on dynamic BFN achieved the highest accuracy of 78.7% in classifying three brain age groups. These findings suggest that dynamic BFN measures, dynamic community structure metrics in particular, play an important role in quantitatively assessing brain aging.

Inferring brain causal and temporal-lag networks for recognizing abnormal patterns of dementia

Brain functional network analysis has become a popular method to explore the laws of brain organization and identify biomarkers of neurological diseases. However, it is still a challenging task to construct an ideal brain network due to the limited understanding of the human brain. Existing methods often ignore the impact of temporal-lag on the results of brain network modeling, which may lead to some unreliable conclusions. To overcome this issue, we propose a novel brain functional network estimation method, which can simultaneously infer the causal mechanisms and temporal-lag values among brain regions. Specifically, our method converts the lag learning into an instantaneous effect estimation problem, and further embeds the search objectives into a deep neural network model as parameters to be learned. To verify the effectiveness of the proposed estimation method, we perform experiments on the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database by comparing the proposed model with several existing methods, including correlation-based and causality-based methods. The experimental results show that our brain networks constructed by the proposed estimation method can not only achieve promising classification performance, but also exhibit some characteristics of physiological mechanisms. Our approach provides a new perspective for understanding the pathogenesis of brain diseases. The source code is released at https://github.com/NJUSTxiazw/CTLN.

Dynamic topological data analysis of functional human brain networks

Dynamic topological data analysis of functional human brain networks

EEG-Based Brain Functional Network Analysis for Differential Identification of Dementia-Related Disorders and Their Onset.

Diagnosing and treating dementia, including mild cognitive impairment (MCI), is challenging due to diverse disease types and overlapping symptoms. Early MCI detection is vital as it can precede dementia, yet distinguishing it from later stage dementia is intricate due to subtle symptoms. The primary objective of this study is to adopt a complex network perspective to unravel the underlying pathophysiological mechanisms of dementia-related disorders. Leveraging the extensive availability of electroencephalogram (EEG) data, our study focuses on the meticulous identification and analysis of EEG-based brain functional network (BFNs) associated with dementia-related disorders. To achieve this, we employ the Phase Lag Index (PLI) as a connectivity measure, offering a comprehensive view of neural interactions. To enhance the analytical rigor, we introduce a data-driven threshold selection technique. This innovative approach allows us to compare the topological structures of the formulated BFNs using complex network measures quantitatively and statistically. Furthermore, we harness the power of these BFNs by utilizing them as pre-defined graph inputs for a Graph Convolution Network (GCN-net) based approach. The results demonstrate that graph theory metrics, such as the rich-club coefficient, transitivity, and assortativity coefficients, effectively distinguish between MCI, Alzheimer's disease (AD) and vascular dementia (VD). Furthermore, GCN-net achieves high accuracy (95.07% delta, 80.62% theta) and F1-scores (0.92 delta, 0.67 theta), highlighting the effectiveness of EEG-based BFNs in the analysis of dementia-related disorders.

3D convolutional neural network for schizophrenia detection using as EEG-based functional brain network

Schizophrenia (ScZ) is a chronic mental disorder affecting the function of the brain, which causes emotional, social, and cognitive problems. This paper explored the functional brain network and deep learning methods to detect ScZ using electroencephalogram (EEG) signals. Functional brain network analysis was proposed and implemented using a multivariate autoregressive model and coherence connectivity algorithm. The three machine learning techniques and 3D-convolutional neural network (CNN) models were applied to classify the ScZ patients and health control subjects, and then the public LMSU database was utilized to assess the performance. The proposed 3D-CNN method achieved the performance of a 98.47 ± 1.47 % in accuracy, 99.26 ± 1.07 % in sensitivity, and 97.23 ± 3.76 % in specificity. Moreover, in addition to the default mode network region, the temporal and posterior temporal lobes of both right and left hemispheres were found as the significant difference areas in ScZ brain network analysis.

6 Graph Analysis of Resting State Functional Brain Networks and Associations with Cognitive Outcomes in Survivors on Pediatric Brain Tumor

Objective:Adolescent and young adult survivors of pediatric brain tumors often live with long-term neuropsychological deficits, which have been found to be related to functional and structural brain changes related to the presence of the tumor itself as well as treatments such as radiation therapy. The importance of brain networks has become a central focus of research over recent decades across neurological populations. Graph theory is one way of analyzing network properties that can describe the integration, segregation, and other aspects of network organization. The existing literature using graph theory with survivors of brain tumor is small and inconsistent; therefore, more work is needed, particularly in survivors of pediatric brain tumors. The present study used graph theory to determine whether functional network properties in this population differ from healthy controls; whether graph metrics relate to core cognitive skills: attention, working memory, and processing speed; and whether they relate to a cumulative measure of neurological risk.Participants and Methods:31 survivors and 31 matched controls completed neuropsychological testing including measures of attention, working memory, and processing speed. They also underwent resting state functional magnetic resonance imaging. Resting state data were preprocessed and spatially constrained independent component analysis was completed to construct connectivity matrices. Finally, graph metrics were calculated utilizing an area under the curve method, including global efficiency, clustering coefficient, betweenness centrality, and small-worldness. Group differences and associations between graph metrics, cognitive outcomes, and neurological risk were analyzed using SPSS version 28.0.Results:Results revealed a significant difference such that brain tumor survivors exhibited less small-world properties in their functional brain networks. This was found to be related to working memory, such that less smallworldness in the network was related to poorer performance. There were no significant relationships with neurological risk, but there were nonsignificant correlations of small-moderate effect size such that lower global efficiency and clustering coefficient were associated with greater neurological risk. Comparisons to structural network analysis from a similar sample and additional post-hoc analyses are also discussed.Conclusions:These findings reveal that survivors of pediatric brain tumor indeed display significant differences in functional brain networks that are quantifiable by graph theory. It is also possible that, with further work, we might better understand how metrics such as smallworldness can be used to predict long-term cognitive outcomes and functional independence in adulthood.

Exploration of rich-club reorganization in facial synkinesis: insights from structural and functional brain network analysis.

Facial palsy therapies based on cortical plasticity are in development, but facial synkinesis progress is limited. Studying neural plasticity characteristics, especially network organization and its constitutive elements (nodes/edges), is the key to overcome the bottleneck. We studied 55 participants (33 facial synkinesis patients, 22 healthy controls) with clinical assessments, functional magnetic resonance imaging (fMRI), and diffusion tensor imaging (DTI). We analyzed rich-club organization and metrics of structural brain networks (rich-club coefficients, strength, degree, density, and efficiency). Functional brain network metrics, including functional connectivity and its coupling with the structural network, were also computed. Patients displayed reduced strength and density of rich-club nodes and edges, as well as decreased global efficiency. All nodes exhibited decreased nodal efficiency in patients. Patients had significantly increased functional connectivity and decreased structural-functional coupling strength in rich-club nodes, rich-club edges, and feeder edges. Our study indicates that facial synkinesis patients have weakened structural connections but enhanced functional transmission from rich-club nodes. The loss of connections and efficiency in structural network may trigger compensatory increases in functional connectivity of rich-club nodes. Two potential biomarkers, rich-club edge density and structural-functional coupling strength, may serve as indicators of disease outcome. These findings provide valuable insights into synkinesis mechanisms and offer potential targets for cortical intervention.

Developing cognitive workload and performance evaluation models using functional brain network analysis

Cognition, defined as the ability to learn, remember, sustain attention, make decisions, and solve problems, is essential in daily activities and in learning new skills. The purpose of this study was to develop cognitive workload and performance evaluation models using features that were extracted from Electroencephalogram (EEG) data through functional brain network and spectral analyses. The EEG data were recorded from 124 brain areas of 26 healthy participants conducting two cognitive tasks on a robot simulator. The functional brain network and Power Spectral Density features were extracted from EEG data using coherence and spectral analyses, respectively. Participants reported their perceived cognitive workload using the SURG-TLX questionnaire after each exercise, and the simulator generated actual performance scores. The extracted features, actual performance scores, and subjectively assessed cognitive workload values were used to develop linear models for evaluating performance and cognitive workload. Furthermore, the Pearson correlation was used to find the correlation between participants’ age, performance, and cognitive workload. The findings demonstrated that combined EEG features retrieved from spectral analysis and functional brain networks can be used to evaluate cognitive workload and performance. The cognitive workload in conducting only Matchboard level 3, which is more challenging than Matchboard level 2, was correlated with age (0.54, p-value = 0.01). This finding may suggest playing more challenging computer games are more helpful in identifying changes in cognitive workload caused by aging. The findings could open the door for a new era of objective evaluation and monitoring of cognitive workload and performance.

Analysis of Weight-Directed Functional Brain Networks in the Deception State Based on EEG Signal.

Although analyzing the brain's functional and structural network has revealed that numerous brain networks are necessary to collaborate during deception, the directionality of these functional networks is still unknown. This study investigated the effective connectivity of the brain networks during deception and uncovers the information-interaction patterns of lying neural oscillations. The electroencephalography (EEG) data of 40 lying persons and 40 honest persons were used to create the weight- directed functional brain networks (WDFBN). Specifically, the connecting edge weight was defined based on the normalized phase transfer entropy (dPTE) between each electrode pair, where the network nodes involved 30 electrode channels. Additionally, the signal connectivity matrices were constructed in four frequency bands: delta, theta, alpha, and beta and were subjected to a difference analysis of entropy values between the groups. Statistical analysis of the classification results revealed that all frequency bands correctly detect deception and innocence with an accuracy of 92.83%, 94.17%, 85.93%, and 92.25%, respectively. Therefore, dPTE can be considered a valuable feature for identifying lying. According to WDFBN analysis, deception has stronger information flow in the frontoparietal, frontotemporal and temporoparietal networks compare to honest people. Furthermore, the prefrontal cortex was also found to be activated in all frequency ranges. This study examined the critical pathways of brain information interaction during deception, providing new insights into the underlying neural mechanisms. Our analysis offers significant evidence for the development of brain networks that could potentially be used for lie detection.

Effect of tDCS on corticomuscular coupling and the brain functional network of stroke patients.

Transcranial direct current stimulation (tDCS) is an emerging brain intervention technique that has gained growing attention in recent years in the rehabilitation area. In this paper, we investigated the efficacy of tDCS in the rehabilitation process of stroke patients, utilizing corticomuscular coupling (CMC) and brain functional network analysis. Specifically, we examined changes in CMC relationships between the treatment and control groups before and after rehabilitation by transfer entropy (TE), and constructed brain functional networks by TE. We further calculated features of the functional networks, including node degree, global efficiency, clustering coefficient, characteristic path length, and small world index. Our results demonstrate that CMC in patients increased significantly after treatment, with greater improvements in the tDCS group, particularly within the beta and gamma bands. In addition, the functional brain network analysis revealed enhanced connectivity between brain regions, improved information processing capacity, and increased transmission efficiency in patients as their condition improved. Notably, treatment with tDCS resulted in more significant improvements than the sham group, with a statistically significant difference observed after rehabilitation treatment (p < 0.05). These findings provide compelling evidence regarding the role of tDCS in the treatment of stroke and highlight the potential of this approach in stroke rehabilitation. The use of tDCS for therapeutic interventions in stroke rehabilitation can significantly improve the coupling of patients' functional brain networks. Also, using Transfer Entropy (TE) as a characteristic of CMC, tDCS was found to significantly enhance patients' TE, i.e. enhanced CMC.

Spatial-temporal data-augmentation-based functional brain network analysis for brain disorders identification.

Due to the lack of devices and the difficulty of gathering patients, the small sample size is one of the most challenging problems in functional brain network (FBN) analysis. Previous studies have attempted to solve this problem of sample limitation through data augmentation methods, such as sample transformation and noise addition. However, these methods ignore the unique spatial-temporal information of functional magnetic resonance imaging (fMRI) data, which is essential for FBN analysis. To address this issue, we propose a spatial-temporal data-augmentation-based classification (STDAC) scheme that can fuse the spatial-temporal information, increase the samples, while improving the classification performance. Firstly, we propose a spatial augmentation module utilizing the spatial prior knowledge, which was ignored by previous augmentation methods. Secondly, we design a temporal augmentation module by random discontinuous sampling period, which can generate more samples than former approaches. Finally, a tensor fusion method is used to combine the features from the above two modules, which can make efficient use of spatial-temporal information of fMRI simultaneously. Besides, we apply our scheme to different types of classifiers to verify the generalization performance. To evaluate the effectiveness of our proposed scheme, we conduct extensive experiments on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset and REST-meta-MDD Project (MDD) dataset. Experimental results show that the proposed scheme achieves superior classification accuracy (ADNI: 82.942%, MDD: 63.406%) and feature interpretation on the benchmark datasets. The proposed STDAC scheme, utilizing both spatial and temporal information, can generate more diverse samples than former augmentation methods for brain disorder classification and analysis.

EEG based brain functional connectivity analysis for post-autoimmune encephalitis (AE) patients with epilepsy

Autoimmune Encephalitis (AE) refers to a group of conditions that occur when the body’s immune system mistakenly attacks healthy brain cells, leading to inflammation of the brain. Seizures are a common symptom of AE and more than a third of patients experiencing seizures secondary to AE become epileptic over time. The objective of the present study is to identify biomarkers that can be used to identify those patients in whom AE will evolve into epilepsy. The bursts of abnormal electrical activity that occur during a seizure can be recorded by using Electroencephalography (EEG). In this work, common EEG (cEEG) and ambulatory EEG (aEEG) were recorded to compare the brain functional connectivity (FC) properties in post-AE patients with epilepsy patients and post-AE patients without epilepsy. The brain functional networks of spike waves were first constructed on the basis of Phase Locking Value (PLV). An analysis was then performed of the differences which existed in the FC properties of clustering coefficient, characteristic path length, global efficiency, local efficiency, and node degree between post-AE patients with epilepsy patients and post-AE patients without epilepsy. From the perspective of brain functional network analysis, post-AE patients with epilepsy showed a more complex network structure. Furthermore, the five FC properties have been found signification different, all FC property values of post-AE patients with epilepsy are higher than those of post-AE patients without epilepsy of cEEG and aEEG. Based on the extracted FC properties, five classifiers were used to classify them, and the results showed that all five FC properties could effectively distinguish between post-AE patients with epilepsy patients and post-AE patients without epilepsy in both cEEG and aEEG. These findings are potentially helpful for diagnosing whether a patient with AE will become epileptic.

Safety and efficacy outcomes after intranasal administration of neural stem cells in cerebral palsy: a randomized phase 1/2 controlled trial

BackgroundNeural stem cells (NSCs) are believed to have the most therapeutic potential for neurological disorders because they can differentiate into various neurons and glial cells. This research evaluated the safety and efficacy of intranasal administration of NSCs in children with cerebral palsy (CP). The functional brain network (FBN) analysis based on electroencephalogram (EEG) and voxel-based morphometry (VBM) analysis based on T1-weighted images were performed to evaluate functional and structural changes in the brain.MethodsA total of 25 CP patients aged 3–12 years were randomly assigned to the treatment group (n = 15), which received an intranasal infusion of NSCs loaded with nasal patches and rehabilitation therapy, or the control group (n = 10) received rehabilitation therapy only. The primary endpoints were the safety (assessed by the incidence of adverse events (AEs), laboratory and imaging examinations) and the changes in the Gross Motor Function Measure-88 (GMFM-88), the Activities of Daily Living (ADL) scale, the Sleep Disturbance Scale for Children (SDSC), and some adapted scales. The secondary endpoints were the FBN and VBM analysis.ResultsThere were only four AEs happened during the 24-month follow-up period. There was no significant difference in the laboratory examinations before and after treatment, and the magnetic resonance imaging showed no abnormal nasal and intracranial masses. Compared to the control group, patients in the treatment group showed apparent improvements in GMFM-88 and ADL 24 months after treatment. Compared with the baseline, the scale scores of the Fine Motor Function, Sociability, Life Adaptability, Expressive Ability, GMFM-88, and ADL increased significantly in the treatment group 24 months after treatment, while the SDSC score decreased considerably. Compared with baseline, the FBN analysis showed a substantial decrease in brain network energy, and the VBM analysis showed a significant increase in gray matter volume in the treatment group after NSCs treatment.ConclusionsOur results showed that intranasal administration of NSCs was well-tolerated and potentially beneficial in children with CP.Trial registration: The study was registered in ClinicalTrials.gov (NCT03005249, registered 29 December 2016, https://www.clinicaltrials.gov/ct2/show/NCT03005249) and the Medical Research Registration Information System (CMR-20161129-1003).

Analysis of task-related MEG functional brain networks using dynamic mode decomposition

Objective. Functional connectivity networks explain the different brain states during the diverse motor, cognitive, and sensory functions. Extracting connectivity network configurations and their temporal evolution is crucial for understanding brain function during diverse behavioral tasks. Approach. In this study, we introduce the use of dynamic mode decomposition (DMD) to extract the dynamics of brain networks. We compared DMD with principal component analysis (PCA) using real magnetoencephalography data during motor and memory tasks. Main results. The framework generates dominant connectivity brain networks and their time dynamics during simple tasks, such as button press and left-hand movement, as well as more complex tasks, such as picture naming and memory tasks. Our findings show that the proposed methodology with both the PCA-based and DMD-based approaches extracts similar dominant connectivity networks and their corresponding temporal dynamics. Significance. We believe that the proposed methodology with both the PCA and the DMD approaches has a very high potential for deciphering the spatiotemporal dynamics of electrophysiological brain network states during tasks.

IABC: A Toolbox for Intelligent Analysis of Brain Connectivity.

Brain functional networks and connectivity have played an important role in exploring brain function for understanding the brain and disclosing the mechanisms of brain disorders. Independent component analysis (ICA) is one of the most widely applied data-driven methods to extract brain functional networks/connectivity. However, it is hard to guarantee the reliability of networks/connectivity due to the randomness of component order and the difficulty in selecting an optimal component number in ICA. To facilitate the analysis of brain functional networks and connectivity using ICA, we developed a MATLAB toolbox called Intelligent Analysis of Brain Connectivity (IABC). IABC incorporates our previously proposed group information guided independent component analysis (GIG-ICA), NeuroMark, and splitting-merging assisted reliable ICA (SMART ICA) methods, which can estimate reliable individual-subject neuroimaging measures for further analysis. After user inputs functional magnetic resonance imaging (fMRI) data of multiple subjects that are regularly organized (e.g., in Brain Imaging Data Structure (BIDS)) and clicks a few buttons to set parameters, IABC automatically outputs brain functional networks, their related time courses, and functional network connectivity of each subject. All these neuroimaging measures are promising for providing clues in understanding brain function and differentiating brain disorders.

Group Identity Mitigates the Hold-Up Problem: Evidence from the Source Localization and Functional Brain Network Analysis

Group Identity Mitigates the Hold-Up Problem: Evidence from the Source Localization and Functional Brain Network Analysis

EEG Based Functional Brain Network Analysis and Classification of Dyslexic Children During Sustained Attention Task.

Reading is a complex cognitive skill that involves visual, attention, and linguistic skills. Because attention is one of the most important cognitive skills for reading and learning, the current study intends to examine the functional brain network connectivity implicated during sustained attention in dyslexic children. 15 dyslexic children (mean age 9.83±1.85 years) and 15 non-dyslexic children (mean age 9.91±1.97 years) were selected for this study. The children were asked to perform a visual continuous performance task (VCPT) while their electroencephalogram (EEG) signals were recorded. In dyslexic children, significant variations in task measurements revealed considerable omission and commission errors. During task performance, the dyslexic group with the absence of a small-world network had a lower clustering coefficient, a longer characteristic pathlength, and lower global and local efficiency than the non-dyslexic group (mainly in theta and alpha bands). When classifying data from the dyslexic and non-dyslexic groups, the current study achieved the maximum classification accuracy of 96.7% using a k-nearest neighbor (KNN) classifier. To summarize, our findings revealed indications of poor functional segregation and disturbed information transfer in dyslexic brain networks during a sustained attention task.

Multi-band network fusion for Alzheimer's disease identification with functional MRI.

The analysis of functional brain networks (FBNs) has become a promising and powerful tool for auxiliary diagnosis of brain diseases, such as Alzheimer's disease (AD) and its prodromal stage. Previous studies usually estimate FBNs using full band Blood Oxygen Level Dependent (BOLD) signal. However, a single band is not sufficient to capture the diagnostic and prognostic information contained in multiple frequency bands. To address this issue, we propose a novel multi-band network fusion framework (MBNF) to combine the various information (e.g., the diversification of structural features) of multi-band FBNs. We first decompose the BOLD signal adaptively into two frequency bands named high-frequency band and low-frequency band by the ensemble empirical mode decomposition (EEMD). Then the similarity network fusion (SNF) is performed to blend two networks constructed by two frequency bands together into a multi-band fusion network. In addition, we extract the features of the fused network towards a better classification performance. To verify the validity of the scheme, we conduct our MBNF method on the public ADNI database for identifying subjects with AD/MCI from normal controls. Experimental results demonstrate that the proposed scheme extracts rich multi-band network features and biomarker information, and also achieves better classification accuracy.