Community Analysis Research Articles

Contrasted trends of intertidal macroalgal communities and sharp decline of canopy-forming species across two decades

Macroalgal communities are essential to coastal ecosystems, yet increasing effects of global change and anthropogenic pressures are leading to their global decline. Investigating the long-term dynamics of these communities across different localities appears crucial to better understand their responses to such pressures, as our knowledge of spatial heterogeneities in macroalgal trajectories remains elusive. To fill this gap, the community trajectory analysis framework provides a set of innovative multivariate metrics to characterize and quantitatively compare the temporal dynamics of different communities. Using long-term monitoring data (2004-2022), this method was applied to intertidal macroalgal communities across 10 locations distributed over more than 500 km of coastline in Brittany, France. Three distinct temporal dynamics were identified. High-shore communities exhibited minimal changes over time, while low-shore communities were characterized by a fluctuating understorey species composition but a general stability pattern. In contrast, the mid-shore community dominated by Ascophyllum nodosum underwent conspicuous changes in composition and structure. Further analysis of the latter community unveiled clear spatial patterns, with a significant deterioration of the structural state attributed to canopy loss in eastern Brittany, negatively impacting understorey species. This decline may ultimately lead to massive changes in coastal ecosystem functioning and services. This study emphasizes the importance of maintaining long-term ecological monitoring as well as the pertinence of temporal trajectories methods to identify and understand community changes at various spatial scales.

Isolation and characterization of novel acetogenic Moorella strains for employment as potential thermophilic biocatalysts.

Thermophilic acetogenic bacteria have attracted attention as promising candidates for biotechnological applications such as syngas fermentation, microbial electrosynthesis, and methanol conversion. Here, we aimed to isolate and characterize novel thermophilic acetogens from diverse environments. Enrichment of heterotrophic and autotrophic acetogens was monitored by 16S rRNA gene-based bacterial community analysis. Seven novel Moorella strains were isolated and characterized by genomic and physiological analyses. Two Moorella humiferrea isolates showed considerable differences during autotrophic growth. The M. humiferrea LNE isolate (DSM 117358) fermented carbon monoxide (CO) to acetate, while the M. humiferrea OCP isolate (DSM 117359) transformed CO to hydrogen and carbon dioxide (H2 + CO2), employing the water-gas shift reaction. Another carboxydotrophic hydrogenogenic Moorella strain was isolated from the covering soil of an active charcoal burning pile and proposed as the type strain (ACPsT) of the novel species Moorella carbonis (DSM 116161T and CCOS 2103T). The remaining four novel strains were affiliated with Moorella thermoacetica and showed, together with the type strain DSM 2955T, the production of small amounts of ethanol from H2 + CO2 in addition to acetate. The physiological analyses of the novel Moorella strains revealed isolate-specific differences that considerably increase the knowledge base on thermophilic acetogens for future applications.

Complete pipeline for Oxford Nanopore Technology amplicon sequencing (ONT-AmpSeq): from pre-processing to creating an operational taxonomic unit table.

Amplicon sequencing has long served as a robust method for characterising microbial communities, and despite inherent resolution limitations, it remains a preferred technique, offering cost- and time-effective insights into bacterial compositions. Here, we introduce ONT-AmpSeq, a user-friendly pipeline designed for processing amplicon sequencing data generated from Oxford Nanopore Technology (ONT) devices. Our pipeline enables efficient creation of taxonomically annotated operational taxonomic unit (OTU) tables from ONT sequencing data, with the flexibility to multiplex amplicons on the same barcode. The pipeline encompasses six main steps-statistics, quality filtering, alignment, clustering, polishing, and taxonomic classification-integrating various state-of-the-art software tools. We provide a detailed description of each step, along with performance tests and robustness evaluations using both test data and a ZymoBIOMICS® Microbial Community Standard mock community dataset. Our results demonstrate the ability of ONT-AmpSeq to effectively process ONT amplicon data, offering valuable insights into microbial community composition. Additionally, we discuss the influence of polishing tools on taxonomic insight and the impact of taxonomic annotation methods on the derived microbial composition. Overall, ONT-AmpSeq represents a comprehensive solution for analysing ONT amplicon sequencing data, facilitating streamlined and reliable microbial community analysis. The pipeline, along with test data, is freely available for public use.

Local signal from Trichoderma afroharzianum T22 induces host transcriptome and endophytic microbiome leading to growth promotion in sorghum.

Trichoderma, a highly abundant soil fungus, may benefit plants, yet it remains understudied in sorghum (Sorghum bicolor). In this study, sorghum plants were cultivated for five weeks in soil pots with or without the inoculation of T. afroharzianum T22. We found that plants inoculated with T. afroharzianum T22 exhibited significant increases in growth parameters and nutrient levels, demonstrating its beneficial role in sorghum. The split-root assay demonstrated that T. afroharzianum T22 is essential in both compartments of soil pots for promoting plant growth. This suggests that local signals from this fungus drive symbiotic benefits in sorghum. The RNA-seq analysis revealed the induction of genes responsible for mineral transport (such as nitrate and aquaporin transporters), auxin response, sugar assimilation (hexokinase), and disease resistance (thaumatin) in the roots of sorghum inoculated with T. afroharzianum T22. Microbial community analysis further unveiled the positive role of T. afroharzianum T22 in enriching Penicillium (ITS) and Streptomyces (16S) while reducing disease-causing Fusarium in the roots. The microbial consortium, consisting of enriched microbiomes from bacterial and fungal communities, showed disrupted morphological features in plants inoculated with T. afroharzianum T22 in the absence of S. griseus. However, this disruption was not observed in the absence of P. chrysogenum. These results suggest that S. griseus may act as a helper microbe in close association with T. afroharzianum T22 in the sorghum endosphere. This study provides the first comprehensive explanation of how T. afroharzianum T22 modulates host molecular determinants and endophytic helper microbes, thereby collectively promoting sorghum growth. These findings may encourage the formulation of a synthetic inoculum dominated by T. afroharzianum T22 to enhance growth and stress resilience in sorghum and other similar crops.

The impact of extraction method and pollen concentration on community composition for pollen metabarcoding

AbstractPremisePlants and pollinators closely interact with each other to form complex networks of species interactions. Metabarcoding of pollen collections has recently been proposed as an advantageous method for the construction of such networks, but the extent to which diversity and community analyses depend on the extraction method and pollen concentration used remains unclear.MethodsIn this study, we used a dilution series of two pollen mixtures (a mock community and pooled natural pollen loads from bumblebees) to assess the effect of mechanical homogenization and two DNA extraction kits (spin column DNA extraction kit and magnetic bead DNA extraction kit) on the detected pollen richness and community composition.ResultsAll species were successfully detected using the three methods, even in the most dilute samples. However, the extraction method had a significant effect on the detected pollen richness and community composition, with simple mechanical homogenization introducing an extraction bias.DiscussionOur findings suggest that all three methods are effective for detecting plant species in the pollen loads on insects, even in cases of very low pollen loads. However, our results also indicate that extraction methods can have a profound impact on the ability to correctly assess the community composition of the pollen loads on insects. The choice of extraction methodology should therefore be carefully considered to ensure reliable and unbiased results in pollen diversity and community analyses.

Microbial metabolic potential of hydrothermal vent chimneys along the submarine ring of fire.

Hydrothermal vents host a diverse community of microorganisms that utilize chemical gradients from the venting fluid for their metabolisms. The venting fluid can solidify to form chimney structures that these microbes adhere to and colonize. These chimney structures are found throughout many different locations in the world's oceans. In this study, comparative metagenomic analyses of microbial communities on five chimney structures from around the Pacific Ocean were elucidated focusing on the core taxa and genes that are characteristic of each of these hydrothermal vent chimneys. The differences among the taxa and genes found at each chimney due to parameters such as physical characteristics, chemistry, and activity of the vents were highlighted. DNA from the chimneys was sequenced, assembled into contigs, and annotated for gene function. Genes used for carbon, oxygen, sulfur, nitrogen, iron, and arsenic metabolisms were found at varying abundances at each of the chimneys, largely from either Gammaproteobacteria or Campylobacteria. Many taxa shared an overlap of these functional metabolic genes, indicating that functional redundancy is critical for life at these hydrothermal vents. A high relative abundance of oxygen metabolism genes coupled with a low abundance of carbon fixation genes could be used as a unique identifier for inactive chimneys. Genes used for DNA repair, chemotaxis, and transposases were found at high abundances at each of these hydrothermal chimneys allowing for enhanced adaptations to the ever-changing chemical and physical conditions encountered.

Distribution and functional perspective analysis of epiphytic and endophytic bacterial communities associated with marine seaweeds, Alexandria shores, Egypt

There is an enormous diversity of life forms present in the extremely intricate marine environment. The growth and development of seaweeds in this particular environment are controlled by the bacteria that settle on their surfaces and generate a diverse range of inorganic and organic chemicals. The purpose of this work was to identify epiphytic and endophytic bacterial populations associated with ten common marine macroalgae from various areas along the Mediterranean Sea coast in Alexandria. This was done to target their distribution and possible functional aspects. Examine the effects of the algal habitat on the counting and phenotypic characterization of bacteria, which involves grouping bacteria based on characteristics such as shape, colour, mucoid nature, type of Gram stain, and their ability to generate spores. Furthermore, studying the physiological traits of the isolates under exploration provides insight into the optimum environmental circumstances for bacteria associated with the formation of algae. The majority of the bacterial isolates exhibited a wide range of enzyme activities, with cellulase, alginase, and caseinase being the most prevalent, according to the data. Nevertheless, 26% of the isolates displayed amylolytic activity, while certain isolates from Miami, Eastern Harbor, and Montaza lacked catalase activity. Geographical variations with the addition of algal extract may impact on the enumeration of the bacterial population, and this might have a relationship with host phylogeny. The most significant observation was that endophytic bacteria associated with green algae increased in all sites, while those associated with red algae increased in Abu Qir and Miami sites and decreased in Eastern Harbor. At the species level, the addition of algal extract led to a ninefold increase in the estimated number of epiphytic bacteria for Cladophora pellucida in Montaza. Notably, after adding algal extract, the number of presented endophytic bacteria associated with Codium sp. increased in Abu Qir while decreasing with the same species in Montaza. In addition to having the most different varieties of algae, Abu Qir has the most different bacterial isolates.

Analysis of microbial communities in wheat, alfalfa, and oat crops after Tilletia laevis Kühn infection.

Common bunt caused by Tilletia laevis Kühn is one of the most serious fungal diseases of wheat. The root-microbial associations play key roles in protecting plants against biotic and abiotic factors. Managing these associations offers a platform for improving the sustainability and efficiency of agriculture production. Here, by using high throughput sequencing, we aimed to identify the bacterial and fungal associations in wheat, alfalfa, and oat crops cultivated in different years in the Gansu province of China. Soil samples (0-6 cm below the surface) from infected wheat by T. laevis had significantly more bacterial and fungal richness than control samples as per the Chao1 analysis. We found some dominant fungi and bacterial phyla in infected wheat by T. laevis, such as Proteobacteria, Acidobacteria, Actinobacteria, Chloroflexi, Ascomycota, Basidiomycota, and Mortierello mycota. We also analyzed the chemical and enzymatic properties of soil samples after T. laevis inoculation. The total nitrogen, total kalium (TK), ammonium nitrogen, available kalium, organic carbon, invertase, phosphatase, and catalase were more in T. laevis-infected samples as compared to the control samples, while pH, total phosphorus, nitrate nitrogen, available phosphorus, and urease were more in control samples compared to T. laevis-infected samples. The results of this study will contribute to the control of wheat common bunt by candidate antagonistic microorganisms and adverse properties of soil.

Plastisphere Microbiomes Respiring Persistent Organohalide Pollutants.

Plastics are invading nearly all ecosystems on earth, acting as emerging repositories for toxic organic pollutants and thereby imposing substantial threats to ecological integrity. The colonization of plastics by microorganisms, forming the plastisphere, has garnered attention due to its potential influence on biogeochemical cycles. However, the capability of plastisphere microorganisms to attenuate organohalide pollutants remains to be evaluated. This study revealed that the plastisphere, collected from coastal ecosystems, harbors unique microbiomes, while the natural accumulation of organohalide pollutants on plastics may favor the proliferation of organohalide-respiring bacteria (OHRB). Laboratory tests further elucidated the high potential of plastisphere microbiota to reductively dehalogenate a variety of organohalide pollutants. Notably, over 70% tested plastisphere completely debrominated tetrabromobisphenol A (TBBPA) and polybrominated diphenyl ethers (PBDEs) to nonhalogenated products, whereas polychlorinated biphenyls (PCBs) were converted to lower congeners under anaerobic conditions. Dehalococcoides, Dehalogenimonas, and novel Dehalococcoidia populations might contribute to the observed dehalogenation based on their growth during incubation and positive correlations with the quantity of halogens removed. Intriguingly, large fractions of these OHRB populations were identified in a lack of the currently known TBBPA/PBDEs/PCBs reductive dehalogenase (RDase) genes, suggesting the presence of novel RDase genes. Microbial community analyses identified organohalides as a crucial factor in determining the composition, diversity, interaction, and assembly of microbes derived from the plastisphere. Collectively, this study underscores the overlooked roles of the plastisphere in the natural attenuation of persistent organohalide pollutants and sheds light on the unignorable impacts of organohalide compounds on the microbial ecology of the plastisphere.

Polystyrene microplastics aggravate radiation-induced intestinal injury in mice

Radiotherapy is a common treatment for abdominal and pelvic tumors, while the radiation-induced intestinal injury (RIII) is one of the major side-effects of radiotherapy, which reduces the life quality and impedes the treatment completion of cancer patients. Previous studies have demonstrated that environmental pollutant microplastics led to various kinds of injury in the gut, but its effects on RIII are still uncovered. In this study, we fed the C57BL/6J mice with distilled water or 50 μg/d polystyrene microplastics (PSMPs) for 17 days and exposed the mice to total abdominal irradiation (TAI) at day 14. Then the severity of RIII was examined by performing histopathological analysis and microbial community analysis. The results demonstrated that PSMPs significantly aggravated RIII in small intestine rather than colon of mice upon TAI. PSMPs increased levels of the histopathological damage and the microbial community disturbance in mice small intestine, shown by the overabundance of Akkermansiaceae and the decrease of microflora including Lactobacillaceae, Muribaculaceae and Bifidobacteriaceae. In conclusion, our results suggested that more microplastics exposure might led to more severe RIII, which should be considered in patients’ daily diet adjustment and clinical radiotherapy plan evaluation. Furthermore, this study also called for the further researches to uncover the underlying mechanism and develop novel strategies to attenuate RIII in mice intestine.

MOSCA 2.0: A bioinformatics framework for metagenomics, metatranscriptomics and metaproteomics data analysis and visualization.

The analysis of meta-omics data requires the utilization of several bioinformatics tools and proficiency in informatics. The integration of multiple meta-omics data is even more challenging, and the outputs of existing bioinformatics solutions are not always easy to interpret. Here, we present a meta-omics bioinformatics pipeline, Meta-Omics Software for Community Analysis (MOSCA), which aims to overcome these limitations. MOSCA was initially developed for analysing metagenomics (MG) and metatranscriptomics (MT) data. Now, it also performs MG and metaproteomics (MP) integrated analysis, and MG/MT analysis was upgraded with an additional iterative binning step, metabolic pathways mapping, and several improvements regarding functional annotation and data visualization. MOSCA handles raw sequencing data and mass spectra and performs pre-processing, assembly, annotation, binning and differential gene/protein expression analysis. MOSCA shows taxonomic and functional analysis in large tables, performs metabolic pathways mapping, generates Krona plots and shows gene/protein expression results in heatmaps, improving omics data visualization. MOSCA is easily run from a single command while also providing a web interface (MOSGUITO). Relevant features include an extensive set of customization options, allowing tailored analyses to suit specific research objectives, and the ability to restart the pipeline from intermediary checkpoints using alternative configurations. Two case studies showcased MOSCA results, giving a complete view of the anaerobic microbial communities from anaerobic digesters and insights on the role of specific microorganisms. MOSCA represents a pivotal advancement in meta-omics research, offering an intuitive, comprehensive, and versatile solution for researchers seeking to unravel the intricate tapestry of microbial communities.

Effect of cyanobacteria biochar addition on humification, fungal dynamics and its mechanism of action in pig manure composting

Aerobic composting is an effective method for resourceful treatment of pig manure (PM). However, traditional composting often suffers from low humification effect and inactive fungal communities. In order to better treat PM, this study applied different doses of cyanobacterial biochar (CB) (T1:0 %; T2:2.5 %; T3:5 %; T4:7.5 %; T5:10 %; and T6:20 %) to PM composting and investigated the effects of biochar additives on the humification of PM composting and fungal communities. The results showed that biochar addition could prolong the thermophilic period (>50°C) by 1–4 days, with T4 being the most effective. Humification analysis showed that biochar increased the degradation of fulvic acid by 4.95–11.19 % and increased the formation of humic acid by 3.43–9.44 %, and final HA/FA ratio of T5 being the highest (2.44) compared to other treatments. The fungal abundance also confirmed that the addition of biochar significantly decreased the number of Ascomycetes at the maturation stage by 15.23 ∼ 89.23 % and increased the number of Basidiomycetes by 7.39 ∼ 119.54 times. Fungal community analysis showed that biochar could promote the birth of dominant fungi in the thermophilic phase and T5 had greater abundance of fungi than the other treatment groups. Network analysis indicated that high doses of CB (10–20 %) could enhance positive interactions among fungi to a greater extent. In conclusion, 10 % CB (T5) can optimize the compost quality to the greatest extent and has the highest application value.

NZVI@BC as a Soil Amendment and Its Effects on Potted Rice Growth and Soil Properties

This study investigated the effects of nano zero-valent iron-modified biochar (nZVI@BC) as a soil amendment on potted rice growth, soil properties, and heavy metal dynamics. Seven treatments with varying amounts of soil conditioner, biochar, and nZVI@BC were applied to potted rice. Results showed that nZVI@BC application significantly improved rice agronomic traits, with the 15 g·kg−1 treatment increasing the panicle formation rate by 15% and 100-grain weight by 8% compared to the control. Soil fertility was enhanced, with available phosphorus increasing from 137 to 281 mg·kg−1 in the most effective treatment. Heavy metal analysis revealed that nZVI@BC application did not increase soil heavy metal content, with Cd levels remaining below 0.3 mg·kg−1 across treatments. Notably, the 10 g·kg−1 nZVI@BC treatment showed potential for slight Cd immobilization, reducing its concentration from 0.32 to 0.26 mg·kg−1. Microbial community analysis showed that nZVI@BC altered soil microbial diversity and composition, with the 10 g·kg−1 treatment resulting in the highest fungal diversity (Chao1 index: 294.219). The relative abundance of the beneficial fungal class Agaricomycetes increased from 40% to 55% with optimal nZVI@BC application. These findings suggest that nZVI@BC has potential as an effective soil amendment for improving rice cultivation while maintaining soil health, microbial diversity, and potentially mitigating heavy metal contamination.

Integrated analysis of intestinal microbial community and muscle transcriptome profile in rabbits

Intestinal microbial community plays an important part in maintaining health and skeletal muscle development in livestock. This study is the first of its kind in the world. In order to better understand the relationship between gut microbiota and gene expression in skeletal muscle of rabbits, caecum contents and longissimus dorsi tissues of rabbits at 0 d (S1), 35 d (S2) and 70d (S3) were collected and subjected for 16S rRNA sequencing and transcriptome sequencing. Our results showed that, among three groups of rabbits, Firmicutes and Bacteroidetes were the dominant phyla at the phylum level, while Akmansia, Bacteroides and Ruminobacter were the dominant genera at the genus level, and the relative abundance of Akmansia and Bacteroides increased firstly and then decreased from 0 d to 70 d. By analyzing the transcriptome sequencing data, we identified 2866, 2446 and 4541 differentially expressed genes (DEGs) in S1 vs S2, S2 vs S3 and S1 vs S3 groups, respectively. Finally, we performed correlation analysis between gut microbiota and the expression levels of muscle development-related genes of rabbits at 0 d and 70 d. Compared with 0 day old rabbits, in 70 day old rabbits Acinetobacter and Cronbacter with decreased abundance, and Ruminococcaceae_UCG-014 and Ruminococcus_1 with increase abundance is beneficial to caecum health in rabbits. These results will lay a foundation for further re-searches about the relationship between caecum microflora and muscle development in rabbits.

Exploring the Influence of Date Palm Cultivars on Soil Microbiota

Plants thrive in diverse environments, where root-microbe interactions play a pivotal role. Date palm (Phoenix dactylifera L.), with its genetic diversity and resilience, is an ideal model for studying microbial adaptation to different genotypes and stresses. This study aimed to analyze the bacterial and fungal communities associated with traditional date palm cultivars and the widely cultivated “Deglet Nour” were explored using metabarcoding approaches. The microbial diversity analysis identified a rich community with 13,189 bacterial and 6442 fungal Amplicon Sequence Variants (ASVs). Actinobacteriota, Proteobacteria, and Bacteroidota dominated bacterial communities, while Ascomycota dominated fungal communities. Analysis of the microbial community revealed the emergence of two distinct clusters correlating with specific date palm cultivars, but fungal communities showed higher sensitivity to date palm genotype variations compared to bacterial communities. The commercial cultivar “Deglet Nour” exhibited a unique microbial composition enriched in pathogenic fungal taxa, which was correlated with its genetic distance. Overall, our study contributes to understanding the complex interactions between date palm genotypes and soil microbiota, highlighting the genotype role in microbial community structure, particularly among fungi. These findings suggest correlations between date palm genotype, stress tolerance, and microbial assembly, with implications for plant health and resilience. Further research is needed to elucidate genotype-specific microbial interactions and their role in enhancing plant resilience to environmental stresses.

Deoxygenation of the Eastern Tropical North Pacific over the last 1200 years

Oxygen minimum zones (OMZ) are characterized by a dissolved oxygen (DO) concentration <0.5 ml L−1. In situ DO measurements suggest that the global OMZ upper limit is shallower than 60 years ago due to global warming. The benthic foraminifera assemblage, trace elements, and biological productivity and denitrification tracers have been used in paleoceanographic research, given that they indicate dysoxic and suboxic changing conditions of bottom water. Studies of benthic foraminifera assemblages in the southwestern margin of Baja California Sur are scarce. Thus, it is necessary to conduct a paleoecological analysis of the benthic foraminifera community on an approximately 1200-year timeline. The sediment core LONO09-MC02 (1200 years old) collected at 680 m depth was examined to analyze benthic foraminifera relative abundances and estimate the DO concentration in the OMZ of Baja California Sur's southwestern margin. The DO concentrations inferred from benthic foraminifera assemblages ranged between 0.09- and 0.17-ml l−1 (4.4 and 8.0 μM). This suggests that the OMZ has maintained dysoxic conditions over the past 1200 years. Moreover, the cluster and principal component analysis defined dysoxic, suboxic, and oxic assemblages. The decoupling between geochemical tracers was associated with biogeochemical cycles of the North Pacific subtropical gyre and varied in response to intermediate water circulation in the Pacific Ocean. The low estimate of dissolved oxygen concentration corresponded with minimal solar activity, favoring La Niña-like oceanographic conditions with high primary productivity.

Deciphering the ecological impact of azo dye pollution through microbial community analysis in water-sediment microcosms.

The uncontrolled release of untreated dyeing wastewater into aquatic ecosystems poses global environmental risks. It alters native microbial communities and associated ecological processes, often going unnoticed. Therefore, the influence of acid orange 7dye (AO7) contamination on the natural microbial community was investigated using a water-sediment microcosm. Compared to sterile microcosms, complete dye decolourization in natural microcosms showed microbial communities' significance in combating xenobiotic contamination. Proteobacteria dominated the water community, whereas Firmicutes dominated the sediment. AO7 exposure induced notable shifts in the structural composition of the bacterial community in both water and sediment. Niveispirillum exhibited a marked decrease, and Pseudomonas demonstrated a notable increase. The - 9.0 log2FC in Niveispirillum, a nitrogen-fixing bacterium, from 24.4% in the control to 0.1% post-treatment, may disrupt nutrient balance, plant growth, and ecosystem productivity. Conversely, elevated levels of Pseudomonas sp. resulting from azo dye exposure demonstrate its ability to tolerate and bioremediate organic pollutants, highlighting its resilience. Functional profiling via KEGG pathway analysis revealed differential expression patterns under AO7 stress. Specifically, valine, leucine, and isoleucine degradation pathways in water decreased by 52.2%, and cysteine and methionine metabolism ceased expression entirely, indicating reduced protein metabolism and nutrient bioavailability under dye exposure. Furthermore, in sediment, glutathione metabolism ceased, indicating increased oxidative stress following AO7 infusion. However, C5-branched dibasic acid metabolism and limonene and pinene degradation were uniquely expressed in sediment. Decreased methane metabolism exacerbates the effects of global warming on aquatic ecosystems. Further, ceased-butanoate metabolic pathways reflect the textile dye wastewater-induced adverse impact on ecological processes, such as organic matter decomposition, energy flow, nutrient cycling, and community dynamics that help maintain self-purification and ecological balance in river ecosystems. These findings underscore the critical need for more comprehensive environmental monitoring and management strategies to mitigate ecological risks posed by textile dyes in aquatic ecosystems, which remain unnoticed.

Enhancement of biohythane production from palm oil mill effluent by Thermoanaerobacterium thermosaccharolyticum PSU-2 and methanogenic mixed cultures using a thermophilic two-ring bioreactor

A novel thermophilic two-ring bioreactor was employed to produce biohythane from palm oil mill effluent (POME) using Thermoanaerobacterium thermosaccharolyticum PSU-2 and thermophilic methanogenic mixed cultures. The reactor system demonstrated impressive performance, achieving hydrogen and methane yields of 113.3 ± 15.0 mL/g-VS and 473.0 ± 60.0 mL/g-VS, respectively, with a total biohythane composition of 4.3 % H2, 37.1 % CO2, and 58.6 % CH4. The process exhibited high treatment efficiency, with COD and VS removal efficiencies reaching 93.7 % and 84.3 %, respectively. Microbial community analysis revealed the crucial roles of various microorganisms in the biohythane production process. Thermoclostridium sp., Thermoanaerobacterium sp., and Anaerobranca sp. were identified as key players in hydrogen production, while Bacteroides sp. and Methanobacterium sp. were found to be essential for methane production. The optimization of operating conditions, including pH (5.0–8.0), temperature (55 °C), and hydraulic retention time (2 d for H2 and 10 d for CH4), significantly enhanced biohythane production efficiency. The techno-economic analysis demonstrated the economic viability of the thermophilic two-ring bioreactor system, with a net present value of 4,186,000 USD, an internal rate of return of 82 %, and a payback period of 1.4 years. These findings highlight the potential of this innovative technology as a sustainable and economically attractive solution for treating POME and simultaneously producing renewable energy in the form of biohythane, contributing to the sustainable development of the palm oil industry and the mitigation of greenhouse gas emissions.

Fe oxides nano-modified pumice enhances hydrogenotrophic methanogenesis in anaerobic digestion: Performance and mechanism of microbial community

Anaerobic digestion (AD), as an eco-friendly biological process, shows potential for the decomposition of leachate produced by waste incineration power plants. In this study, the effects of Fe oxides nano-modified pumice (FNP) were investigated on the fresh leachate AD process. Firstly, a simple hydrothermal method was used to prepare FNP, then introduced into the UASB reactor to evaluate its AD efficiency. Results showed that the inclusion of FNP could shorten the lag phase by 10 days compared to the control group. Furthermore, cumulative methane production in the FNP group was enhanced by 20.11%. Mechanistic studies suggested that hydrogenotrophic methanogenesis in the FNP group was more pronounced due to the influence of key enzymes (i.e., dehydrogenase and coenzyme F420). Microbial community analysis demonstrated that FNP could enhance the abundance of Methanosarcina, Proteobacteria, Sytrophomonas, and Limnobacter, which might elevate enzyme activity involved in methane production. These findings suggest that FNP might mediate interspecies electron transfer among these microorganisms, which is essential for efficient leachate treatment.

Analysis of Community and Stakeholder Relationships in the Development of Cigadung Creative Tourism Urban Village

This study examines local communities and stakeholders in the establishment of Cigadung Creative Tourism Urban Village in Bandung City. The success of Cigadung Creative Tourism Urban Village depends on effective cooperation between the local population, government, and tourism sector. This study uses qualitative descriptive research method included observation, interviews, and document analysis. The results demonstrated that local communities, especially Pokdarwis, are essential to tourism planning, management, and destination marketing. Government assistance and partnership with academics and businesses have helped this tourism urban community succeed. However, party coordination issues must be resolved by open communication and collaboration. This research sheds light on sustainable tourism development dynamics that can be used to benefit local welfare and culture.