mtDNA Analysis Research Articles

Phylogeography of feral Monteiro pig in the Brazilian Pantanal Ecosystem.

The Monteiro is a feral pig found in the Brazilian Pantanal ecosystem. The goal of this research is to generate data and knolewdge related to animal populations wich can be used for management and development of an in vitro conservation program for animal resourses at Pantanal ecosystem. The present study evaluated animals sampled from 10 distinct locations within the region, using 19 microsatellite markers (N = 189) and the control region of mitochondrial DNA (mtDNA) (N = 392). Low genetic differences were found between populations with the microsatellite data. The FST range was between 0.009 and 0.063 (p-value < 0.05). The Mantel test corroborated with previous results, as low correlations between genetic and geographic distances were observed (r2 = 0.2309, p = 0.06). Bayesian analysis for genetic structure identification placed the Monteiro pigs into three main clusters (MOB, Pop 1 and all others Pantanal populations). Most of the Monteiro pigs share a single European haplotype as seen by mtDNA analyses. This haplotype is not exclusive, as it is shared with other swine populations (commercial and other locally adapted breeds). Monteiro populations from different geographic locations within Pantanal are not isolated and can be considered as a large unique population. Since animals roam freely to seek food and water, or even due to seasonal flooding of their habitat, the Monteiro populations presented absence of major genetic structure and evidence of high gene flow. These results can be used to create a management plan and in situ and ex situ conservation program for conservation and use of the Monteiro breed in the Pantanal ecosystem.

Phylogenetic relationships between different raccoon dog (Nyctereutes procyonoides) populations based on four nuclear and Y genes.

The raccoon dog (Nyctereutes procyonoides), endemic to East Asia, is classified as six subspecies according to their geographical distribution including a population introduced to Europe. Studies on phylogenetic relationship or population genetics in both native and introduced areas have been carried out recently. Lately, opinions that Japanese raccoon dogs should be classified as a different species were asserted based on several studies using karyotypes, morphometric characters, mtDNA, and microsatellites analysis. However, no data pertaining to the nuclear DNA (nDNA) or Y chromosome are available. To estimate the relationship among the species using different genes is necessary in understanding of the history of this species. Therefore, we investigated nDNA and Y chromosomes in our study to define relationships: (1) between continental raccoon dog populations, (2) between original and introduced groups, and (3) between continental and Japanese groups. The analysis of four nuclear (CHRNA1, VTN, TRSP, WT1) and ZFY genes indicated that there had been no genetic differentiation among the continental populations. However, significant differences were observed between continental and Japanese raccoon dogs in VTN and ZFY genes implying genetic differentiation has been going between them. To better understand the phylogenetic relationship among raccoon dog populations, further study will be necessary.

High levels of population genetic differentiation in the American crocodile (Crocodylus acutus).

The American crocodile (Crocodylus acutus) is a widely distributed species across coastal and brackish areas of the Neotropical region of the Americas and the Greater Antilles. Available information on patterns of genetic differentiation in C. acutus shows a complex structuring influenced by interspecific interactions (mainly hybridization) and anthropogenic actions (mostly historical hunting, recent poaching, habitat loss and fragmentation, and unintentional translocation of individuals). In this study, we used data on mitochondrial DNA control region and 11 nuclear polymorphic microsatellite loci to assess the degree of population structure of C. acutus in South America, North America, Central America and the Greater Antilles. We used traditional genetic differentiation indices, Bayesian clustering and multivariate methods to create a more comprehensive picture of the genetic relationships within the species across its range. Analyses of mtDNA and microsatellite loci show evidence of a strong population genetic structure in the American crocodile, with unique populations in each sampling locality. Our results support previous findings showing large degrees of genetic differentiation between the continental and the Greater Antillean C. acutus. We report three new haplotypes unique to Venezuela, which are considerably less distant from the Central and North American haplotypes than to the Greater Antillean ones. Our findings reveal genetic population differentiation between Cuban and Jamaican C. acutus and offer the first evidence of strong genetic differentiation among the populations of Greater Antillean C. acutus.

An Attempt to Reconstruct the Phylogeny of the Hipposideros Leaf-nosed Bats Based on Nuclear Gene Markers.

The genus Hipposideros is one of the largest bat genera. The latest research on its Asian representatives has been done only with mitochondrial or sole nuclear markers. In the present study we compare the results of phylogenetic reconstructions, based on mitochondrial, on single nuclear genes and on multiple nuclear markers analyzed using the MRP algorithm (Matrix representation with parsimony) for representative species from all the main species groups. MRP analysis provides the most supported and well-interpretable phylogeny. Our data indicate monophyly of the large Asian leaf-nosed bats which suggests they are an independent taxon of the subgenus rank, as well as monophyly of several species complexes which are paraphyletic according to mtDNA analysis.

Identification of Ajnala skeletal remains using multiple forensic anthropological methods and techniques: A bioarchaeological report

Fragmented and badly damaged commingled human remains present a tough challenge for their identification pursuits in forensic anthropology. Thousands of unknown human remains along with items of contextual identity, reportedly belonging to 282 Indian sepoys killed in 1857, were exhumed mon-scientifically from a disused ancient well at Ajnala (Amritsar, India). In this manuscript, the non-scientific excavation of unknown human remains from the abandoned well, their forensic anthropological strategies for identification purposes, challenges being faced and future possibilities of their biological profiling have been discussed. Multiple methods and techniques like anthropological examinations, odontological profiling, radiological analyses, stable isotope and mitochondrial DNA (mtDNA) analyses were applied to few bones and teeth collected from the Ajnala skeletal assemblage. Though majority of studied bones and teeth were found belonging to adult males, very few of them had morphological, osteological and molecular features questioning the authenticity and validity of the written records. Due to certain ambiguous findings or gaps observed between the anthropological analyses of the Ajnala skeletal remains and the reported versions about their affiliations; certain advanced radiological, chemical and molecular techniques were applied to estimate their probable age, sex and populational affinity. The obtained radiological, isotopic and molecular signatures of the remains were compared with the available databases to estimate their affinity with the individuals of geographic area to whom the remains reportedly belonged to. The maternally inherited mtDNA haplogroup assignments, and stable isotope analysis of carbon and oxygen suggested that the studied human remains belonged to the individuals from West Bengal, Bihar, Odisha, Awadh (presently in Uttar Pradesh) and parts of Meghalaya and Manipur as potential regions of their geographic identity and thus, attributing the victims to be non-local to the site. However, merely on the basis of forensic anthropological examinations of very few bones and teeth (collected out of a huge collection of thousands of bones and teeth); it would be just an unqualified and sweeping conclusion to claim their identity as adult or non-adult, male or female, local or non-local, victims of 1857 mass killings or to the victims of ceremonial sacrifices or criminal activities committed in the past. A sufficient number of bones and teeth along with items of personal identity needs to be examined with multiple scientific techniques to arrive at some valid conclusions about their biological identity.

The Origin of Isolated Populations of the Mountain Weevil, Liparus glabrirostris-The Flagship Species for Riparian Habitats.

Liparus glabrirostris is one of the largest European weevils, and it has been recently proposed as the flagship species for threatened riparian habitats in the mountains. For effective conservation of its populations (and associated habitats), it is crucial to understand its history, contemporary distribution, genetic diversity and predict changes in the range, including its highly isolated populations on the Baltic coast. Here, we examined numerous populations of L. glabrirostris across almost the entire species range using phylogeography and species niche modeling (SNM) approaches. Analyses of mtDNA and nucDNA markers revealed the existence of 2 major mitochondrial lineages generally separated between 1) the Alpine region and 2) the Bohemian Massif, the Carpathians, and the Baltic coast areas. Genetic diversity in nuclear genes was more complicated with no clear division between populations. The origin of Baltic populations was derived from the Carpathians, but there were probably multiple expansion events to the north. SNM suggested the existence of glacial refugia for L. glabrirostris, mainly in the Alps and the Southern Carpathians. Current predictions of species range were found to be generally congruent with zoogeographic data; however, the Baltic coast was not really supported as a suitable area for L. glabrirostris. An important prediction of future distribution (2050-2070 CE) suggests a shrinkage of the L. glabrirostris range and extinction of some of its populations (particularly those isolated on lower altitudes). Based on the aforementioned data, proposals for the protection of this species are proposed, including the designation of several evolutionary units of conservation importance.

Mitochondrial DNA intra-individual variation in a bumblebee species: A challenge for evolutionary studies and molecular identification

Mitochondrial DNA (mtDNA) regions have been widely used as molecular markers in evolutionary studies and species identification. However, the presence of heteroplasmy and NUMTs may represent obstacles. Heteroplasmy is a state where an organism has different mitochondrial haplotypes. NUMTs are nuclear pseudogenes originating from mtDNA sequences transferred to nuclear DNA. Evidences of heteroplasmy were already verified in the bumblebee Bombus morio in an earlier study. The present work investigated in more detail the presence of intra-individual haplotypes variation in this species. Heteroplasmy was detected in individuals from all the ten sampled locations, with an average of six heteroplasmic haplotypes per individual. In addition, some of these heteroplasmic haplotypes were shared among individuals from different locations, suggesting the existence of stable heteroplasmy in B. morio. These results demonstrated that heteroplasmy is likely to affect inferences based on mtDNA analysis, especially in phylogenetic, phylogeographic and population genetics studies. In addition, NUMTs were also detected. These sequences showed divergence of 2.7% to 12% in relation to the mitochondrial haplotypes. These levels of divergence could mislead conclusions in evolutionary studies and affect species identification through DNA barcoding.

Genetic characterisation of the spiny dogfish Squalus acanthias in the Adriatic Sea: evidence for high genetic diversity and an Atlantic–South Pacific origin

Spiny dogfish Squalus acanthias is a widely distributed, highly migratory mesopredatory shark that is extremely sensitive to overexploitation. Because of unregulated targeted and incidental capture and a lack of enforceable management in the Mediterranean Sea, the spiny dogfish subpopulation has declined by at least 50% in the Mediterranean Sea over the past 75–105 years, and is regionally classified as endangered. In this study we sampled 124 spiny dogfish in the northern-most part of the Mediterranean (i.e. the Adriatic Sea) to: (1) assess levels of genetic diversity using 13 microsatellite loci and mitochondrial (mt)DNA (NADH dehydrogenase subunit 2 (ND2) gene); and (2) infer its evolutionary placement while assessing further possible genetic divergence across the Atlantic and Pacific Ocean basins based on ND2. Analysis of mtDNA revealed 12 unique haplotypes and a high level of genetic variation in the Mediterranean region, whereas results from microsatellite markers showed significant genetic heterogeneity and a fine-scale stock structuring involving both sexes. The findings support an Atlantic–South Pacific origin for the spiny dogfish in the Adriatic Sea, with little or no present-day connectivity with the Atlantic population. Consequently, this commercially exploited and regionally endangered coastal shark in the Adriatic Sea should be considered as a separate management unit, with implementation of regional protective management plans.

The mitochondrial DNA copy number of cumulus granulosa cells may be related to the maturity of oocyte cytoplasm.

The mitochondrial DNA copy number of cumulus granulosa cells may be related to the maturity of oocyte cytoplasm.

Mitogenome Diversity and Maternal Origins of Guangxi Buffalo Breeds.

Simple SummaryMitochondrial DNA (mtDNA) analysis is an important tool to assess the maternal origin and phylogeny of domestic animals. Fuzhong and Xilin buffalo are two native buffalo breeds in Guangxi, a province in the southwest of China that belongs to the major hotspots of swamp buffalo domestication centers. In this study, we sequenced the complete mitochondrial genomes of two buffalo breeds in Guangxi Province to perform the phylogenetic analysis.Guangxi Province, in the southwest of China, is one of the putative migratory corridors or domestication centers for swamp buffalo. In this study, we investigated the evolutionary status of two Guangxi native buffalo breeds (Fuzhong buffalo, n = 15; Xilin buffalo, n = 25) based on the complete mitogenome sequencing. Our results revealed rich genetic diversity in the two buffalo breeds. We detected five haplogroups (SA1, SA2, SB1, SB2, SB3) in the two Guangxi buffalo breeds, and the haplogroup SB3 in the Fuzhong buffalo. Our results showed that the haplogroup SA1 was associated with the major domestication event that involved population expansion in Guangxi buffalo. In conclusion, our findings revealed a high level of maternal genetic diversity and the phylogenetic pattern of the two Guangxi buffalo breeds.

New records of exotic species of Oniscidea (Crustacea: Isopoda) from northern Mexico

To date 86 species of 33 genera and 16 families of Oniscidea have been recorded in Mexico. Collections of 4 academic institutions and recent field materials were revised. From 1,820 specimens, 1,417 (77.6%) were determined to belong to 6 exotic forms. A taxonomic account and a species identification key with SEM plates of these exotic entities are presented. For morphological analysis we used light and SEM microscopy. The molecular identity of 5 of the 6 forms was examined through cytochrome oxidase 1 gene (mtDNA) analyses. The exotic species determined are: Armadillidae, Cubaris murina; Armadillidiidae, Armadillidium vulgare; Porcellionidae, Agabiformius lentus, Porcellio laevis, P. scaber, and Porcellionides pruinosus. The exotic oniscideans were recorded from urban, rural and natural (riparian) zones in 15 states of northern Mexico, including the first formal records in Aguascalientes,Chihuahua, Durango, and Zacatecas. Armadillidium vulgare, P. laevis, and P. pruinosus often co-occurred and are the most widely distributed species in this region. Although most of the material examined was recorded from urban zones(&gt; 50% of studied sites), A. vulgare and P. laevis were also found in riparian areas (natural zones), yet P. pruinosus was recorded mainly from riparian areas (60% of 45 lots examined).

First record of Bryde's whale (Balaenoptera brydei, Olsen, 1913) in the southeastern Mediterranean Sea, Alexandria, Egypt

The deviation of whales towards the beaches is one of the known phenomena around the world but it is one of the few and rare phenomena in the southeastern Mediterranean off Egypt, so the occurrence of this phenomenon requires detailed studies to find out the type of delinquent whale as well as the reasons for its attraction towards the shore of the Mediterranean Sea. In the current study, several methods were used to determine the type of delinquent whale, such as 1) morphometric measurements, 2) the characterization of the phenotype, 3) the analysis of mtDNA, and 4) analyzing the biochemical content of whale samples to try to determine its health condition. Furthermore, the physical, chemical and productive properties of water area have been studied. The species of the whale was identified as Balaenoptera brydei and the results showed that whale mortality due to hunger or drift was excluded due to its high protein content, which reinforced the assumption of the tendency of the whale in question to commit suicide to lose its natural environment and peers. In general, the presence of whales in the southeastern Mediterranean off the Egyptian coast is a phenomenon that needs further studies due to it is increased in recent decades.

New advances in the study of prehistoric human activity on the Tibetan Plateau

The origin, nature and timing of prehistoric human activity on the Tibetan Plateau has become a major research topic in recent years, and great progress has been made in the study of the earliest human activity on the plateau and in the origin of modern Tibetans. The earliest human presence on the plateau has been updated by two important new studies. Rich blade assemblages found in the excavation of the Nwya Devu site shows that modern humans occupied the interior region of the Tibetan Plateau, above 4600 m a.s. l., some 30−40 thousand years ago. Recently, a study of a human mandible fossil found in Xiahe County, Gansu Province, in the northeastern Tibetan Plateau, indicated that Denisovans occupied the Tibetan Plateau at least 160000 years ago, much earlier than the arrival of modern humans to the region. The latter study also implies that the high-altitude adaptation gene, which occurs widely among modern Tibetans and Sherpa, was probably contributed by local archaic humans, like the Xiahe Denisovans. These two studies not only point to the long and complex human history in the Tibetan Plateau, but they also indicate the complexity of human evolution in the Middle and Late Pleistocene in East Asia. Whether early Holocene hunter-gatherers had already permanently settled on the Tibetan Plateau before the arrival of millet and barley agriculture after the middle Holocene, has become another major research topic in the study of the prehistoric human history of the Tibetan Plateau. However, due to the current lack of reliable evidence for the seasonality of Paleolithic site occupations in the Tibetan Plateau, the issue remains difficult to resolve. The origin of modern Tibetans has been debated for decades. A new linguistic study of the phylogeny and the time depth of the original divergence of the Sino-Tibetan language, based on Bayesian phylogenetic analysis of 109 languages, indicates that Sino-Tibetan languages diverged during some 4200 to 7800 years ago, which points to Neolithic population dispersals to the Tibetan Plateau and their close relationship with modern Tibetans. In addition, a new genetic study, based on mitochondrial DNA (mtDNA) analyses of 8277 Tibetans and 58514 individuals from the surrounding populations, has traced the genetic legacy of modern Tibetans to the historical or even Neolithic periods. Calculation of the time depth of the two common haplogroups in modern Tibetans found in this study, implies that these two groups of populations originated in northern China between 6000 and 10000 years ago and differentiated between 4000 and 5200 years ago. Both of these studies are consistent with previous archaeological studies which propose that Neolithic and Bronze Age populations moved to the Tibetan Plateau from a substantial considerable of areas in North China. More importantly, the two studies further confirm the close relationships between Neolithic millet farmers and modern Tibetans, clarifying the origin of modern Tibetans. There have also been several new Paleolithic archaeological studies of the regions surrounding the Tibetan Plateau. A deeper understanding of the Initial Upper Paleolithic in North China, Mongolia and Siberia, and new findings of the Levallois technology in the Jinsitai and Tongtian cave sites in North China, indicate a dispersal route of Paleolithic populations from the north to the Tibetan Plateau. Other studies also propose possible population migration routes in the southeastern and southwestern plateau, although archaeological evidence is currently lacking. Together with the new Paleolithic archaeological findings for the Tibetan Plateau, it appears that different human groups, including Denisovans, Neanderthals and modern humans, were living in or around the Tibetan Plateau during the Middle to Late Pleistocene. Although recent studies provide new clues for understanding their inter-relationships, additional questions have arisen, and more multidisciplinary studies are needed in the future to address them. Above all, these new studies are crucial for understanding the mechanisms by which prehistoric humans spread to and in the Tibetan Plateau, and their adaptation to the high elevation environments. In addition, they shed new light on the origin of modern humans, as well as on human evolution in East Asia during the Middle and Late Pleistocene.

Variants in NGLY1 lead to intellectual disability, myoclonus epilepsy, sensorimotor axonal polyneuropathy and mitochondrial dysfunction

NGLY1 encodes the enzyme N‐glycanase that is involved in the degradation of glycoproteins as part of the endoplasmatic reticulum‐associated degradation pathway. Variants in this gene have been described to cause a multisystem disease characterized by neuromotor impairment, neuropathy, intellectual disability, and dysmorphic features. Here, we describe four patients with pathogenic variants in NGLY1. As the clinical features and laboratory results of the patients suggested a multisystem mitochondrial disease, a muscle biopsy had been performed. Biochemical analysis in muscle showed a strongly reduced ATP production rate in all patients, while individual OXPHOS enzyme activities varied from normal to reduced. No causative variants in any mitochondrial disease genes were found using mtDNA analysis and whole exome sequencing. In all four patients, variants in NGLY1 were identified, including two unreported variants (c.849T>G (p.(Cys283Trp)) and c.1067A>G (p.(Glu356Gly)). Western blot analysis of N‐glycanase in muscle and fibroblasts showed a complete absence of N‐glycanase. One patient showed a decreased basal and maximal oxygen consumption rates in fibroblasts. Mitochondrial morphofunction fibroblast analysis showed patient specific differences when compared to control cell lines. In conclusion, variants in NGLY1 affect mitochondrial energy metabolism which in turn might contribute to the clinical disease course.

Genetic diversity within and between British and Irish breeds: The maternal and paternal history of native ponies.

The UK and Ireland have many native pony breeds with historical and cultural importance as well as being a source of uncharacterized genetic diversity. However, there is a lack of comprehensive research investigating their genetic diversity and phylogenetic interrelationships. Many studies contain a limited number of pony breeds or small sample sizes for these breeds. This may result in erroneous grouping of pony breeds that otherwise have intricate interrelationships with each other and are not evaluated correctly when placed as a token subset of a larger dataset. This is the first study that specifically investigates the genetic diversity within and between British and Irish native pony breeds using large sample numbers from locations of their native origin.This study used a panel of microsatellite markers and sequence analysis of the mitochondrial control region to analyze the genetic diversity within and between 11 pony breeds from Britain and Ireland. A large dataset was collected (a total of 485 animals were used for mtDNA analysis and 450 for microsatellite analysis), and previously published data were used to place the British and Irish ponies in a global context.The native ponies of Britain and Ireland were found to have had a complex history, and the interrelationships between the breeds were revealed. Overall, high levels of genetic diversity were maintained in native breeds, although some reduction was evident in small or isolated populations (Shetland, Carneddau, and Section C). Unusual mitochondrial diversity distribution patterns were apparent for the Carneddau and Dartmoor, although among breeds and global haplogroups there was a high degree of haplotype sharing evident, well‐represented within British and Irish ponies. Ancestral maternal diversity was maintained by most populations, particularly the Fells and Welsh ponies, which exhibited rare and ancient lineages. The maternal and paternal histories of the breeds are distinct, with male‐biased crossings between native breeds, and other shared influences, likely Arabs and Thoroughbreds, are apparent. The data generated herein provide valuable information to guide and implement the conservation of increasingly rare native genetic resources.

Interdisciplinary identification of the skeletal remains of Catherine Roberts‐Davies, The first Welsh settler death in Patagonia, Argentina in 1865

AbstractIn 1995, an almost complete human skeleton was found in Punta Cuevas, in the southern coast of Puerto Madryn, Chubut, Argentina. The burial traits and the associated objects suggested the skeleton might belong to Mrs. Catherine Roberts‐Davies, a middle‐aged woman who was the first dead person among the first group of 163 Welsh settlers that set sail on May 28, 1865, from Liverpool to Bahía Nueva, in Argentinian Patagonia. The aim of this paper is to present the interdisciplinary studies conducted between 1995 and 2016 in order to identify these remains and to explore the possible causes of death. The age at death of the skeleton was estimated between 25 and 40 years old and sexed as female. The analyses of mtDNA haplogroup resulted in K2a, which is highly frequent in European populations. An ascendant maternal genealogy of Mrs. Roberts‐Davies was reconstructed, based on documentary sources. After this genealogical research, a living descendant, who currently lives in Wales, was found. An mtDNA analysis of control region 16024‐576 was compared among samples taken from the unknown skeleton and the descendant. The results confirmed that the skeleton found in Punta Cuevas belongs to Mrs. Catherine Roberts‐Davies. With respect to the cause of death, according to two historical medical reports, Mrs. Roberts‐Davies died from “black fever” (i.e., visceral leishmaniasis) or scurvy. Skeletal evidence suggests that she could have suffered from scurvy as a consequence of the harsh conditions of living during the trip from Liverpool and the first days after the arrival to Patagonia.

Large-scale hybridization of Japanese populations of Hinamoroko, Aphyocypris chinensis, with A. kikuchii introduced from Taiwan

Aphyocypris chinensis is a small cyprinid that is widely distributed in lowland areas of continental China, the Korean Peninsula, and the northwestern part of Kyushu, Japan. However, this species is severely threatened in Japan due to human impacts; thus, several facilities and citizen groups implemented captive breeding and reintroduction/reinforcement programs using several dozen founder fish collected from Tanushimaru, the location with the only known natural population, in the 1980s and 1990s. To determine the phylogenetic position and genetic authenticity of Japanese populations of A. chinensis, we conducted mtDNA and genome-wide SNP analyses using a total of 254 specimens from 31 wild and captive samples, including specimens of Chinese and Korean A. chinensis and the close relative A. kikuchii from Taiwan. The mtDNA divergence and phylogeny indicated that the haplotypes found exclusively in Japan were differentiated from the Chinese/Korean haplotypes (uncorrected p = 2.6% in the cytochrome b gene) to the same extent as they were from A. kikuchii haplotypes (p = 2.9%). Results from mtDNA sequences and 47–359 SNPs, obtained using the MIG-seq method with different parameter sets, revealed that the initial captive populations and an extinct wild population in Ukiha, adjacent to Tanushimaru, were genuine Japanese populations, whereas all extant captive and wild populations in Japan are hybrids between Japanese A. chinensis and A. kikuchii, or A. kikuchii itself. The details of the captive breeding and exchange programs, as well as evidence for the aquarium trade of A. kikuchii since the 1990s, strongly suggest that the mixture of A. kikuchii into Japanese populations occurred within the first several years of the establishment of captive populations in 1994. The present case of the highly probable extinction of genuine Japanese populations of A. chinensis emphasizes the importance of confirmation and management of the genetic authenticity of conservation-targeted species.

A new species of Kurixalus (Anura: Rhacophoridae) from northern Vietnam with comments on the biogeography of the genus

ABSTRACT We describe a new species of rhacophorid frogs from Nghe An Province in northern Vietnam based on morphological and molecular evidences. Morphologically, Kurixalus gracilloides sp. nov. is distinguished from its congeners by a combination of the following diagnostic characters: body size small (snout–vent length 27.9–31.2 mm in males); head width subequal to head length; snout rounded with no dermal projection; canthus rostralis distinct, curved; vomerine teeth present; single internal vocal sac; iris golden-brown; small nuptial pad in finger I; dorsal surfaces golden-brown with a saddle-shaped dark marking; large dark spots on ventral surfaces absent; dermal fringes along outer edge of limbs; conical dermal appendage at the heel; skin on dorsum rough; skin on throat and chest granular; finger webbing rudimentary and toe webbing moderately developed, webbing formula I 2–2½ II 1½–3 III 1¾–3½ IV 3–1½ V. The new species is separated from all other congeners by uncorrected genetic distances ranging from 5.4% to 12.7% based on mitochondrial 16S rRNA gene. Phylogenetic analyses of mtDNA suggest that the new species is nested within a clade of Taiwanese and Yunnan Kurixalus with strong support values. The new species is currently known only from secondary bamboo forest in Pu Mat National Park, northern Vietnam, at elevations of 150 m asl. We suggest the new species should be considered as Near Threatened (NT) following the IUCN’s Red List categories. http://www.zoobank.org/urn:lsid:zoobank.org:pub:C1BF843F-2F31-4CED-B1F9-13A9035C77C9

How history and geography may explain the distribution in the Comorian archipelago of a novel mutation in DNA repair-deficient xeroderma pigmentosum patients.

Xeroderma pigmentosum (XP) is a rare, genetic, autosomal nucleotide excision repair-deficient disease characterized by sun-sensitivity and early appearance of skin and ocular tumors. Thirty-two black-skinned XP from Comoros, located in the Indian Ocean, were counted, rendering this area the highest world prevalence of XP. These patients exhibited a new homozygous XPC mutation at the 3’-end of the intron12 (IVS 12-1G>C) leading to the absence of XPC protein. This mutation, characteristic of the consanguineous Comorian families, is associated with a founder effect with an estimated age of about 800 years. Analysis of mt-DNA and Y-chromosome identified the haplogroups of patients, who are derived from the Bantu people. Although the four Comorian islands were populated by the same individuals during the 7-10th centuries, XP was found now only in the Comorian island of Anjouan. To avoid the slavery process caused by the arrival of the Arabs around the 11-13th centuries, inhabitants of Anjouan, including XP-heterozygotes, hid inland of the island protected by volcanoes. This population lived with an endogamic style, without connection with the other islands. XP patients still live in the same isolated villages as their ancestries. Local history and geography may, thus, explain the high incidence of XP located exclusively in one island.

Molecular identification of Taenia hydatigena and Mesocestoides species based on copro-DNA analysis of wild carnivores in Mongolia.

Cyclophyllidean tapeworms obligatorily parasitize numerous mammalian species, including herbivores, domestic animals and humans, of which, the genera Taenia and Mesocestoides are well characterized. However, little is known about these parasitic infections in wild animals. This study aims to investigate the prevalence and distribution of Taenia sp. and Mesocestoides sp. in wild carnivores in Mongolia by identifying tapeworm species based on mtDNA analysis. The field survey was carried out in 2012–2013 in 19 provinces located in different ecological regions. A total of 405 fecal samples from wild carnivores were collected. Specific DNA markers in fecal samples was detected via copro-DNA analysis and tapeworm species were identified by DNA sequencing. From 27.7% (112/405) of samples, cox1 and 12S rRNA genes of tapeworms were amplified. Further, Taenia hydatigena (50.0%, 56/112) and two Mesocestoides species, including Mesocestoides sp.-1 (36.6%, 41/112) and Mesocestoides sp.-2 (13.4%, 15/112) were identified by DNA sequencing. The prevalence of T. hydatigena was 19.9% (27/136), 13.8% (23/167), 4.8% (3/62), and 7.5% (3/40) in wolves, red foxes, corsac foxes, and snow leopards, respectively. The prevalence of Mesocestoides sp.-1 was 14.7% (20/136), 9% (15/167), 9.7% (6/62) in wolves, red foxes, and corsac foxes, while the prevalence of Mesocestoides sp.-2 was 4.4% (6/136), 1.8% (3/167), 3.2% (2/62), and 10.0% (4/40) in wolves, red foxes, corsac foxes, and snow leopards, respectively. T. hydatigena was found throughout all ecological regions, while Mesocestoides sp.-1 was in the mountain taiga, forest-steppe, steppe, desert-steppe, and desert, and Mesocestoides sp.-2 in the alpine, forest-steppe, steppe, and desert-steppe ecoregions. This study revealed the prevalence and distribution of cyclophyllidean tapeworms in wild carnivores in Mongolia; while also confirming that wolves, red foxes, corsac foxes, and snow leopards serve as definitive hosts for unidentified Mesocestoides species.