3-D Imaging refers to a technique for creating or enhancing the illusion of depth in an image by presenting two offset images separately to the left and right eye of the viewer. Anaglyph generation is one of the most cost effective methods of spectroscopic 3D imaging. Almost all human activities are related to some motion. In this paper we discuss about a method to control realtime anaglyph images based on the movement of MEMS inertial sensors. The aim is to track the movements of the sensor and accordingly build a system that controls anaglyph images simultaneously. A system to control anaglyph images using MEMS was developed at the end of experiment successfully. This can be further enhanced to develop various systems based on motion tracking and image creation, like human body modeling and gesture recognition and also to other 3D imaging techniques.