Anaerobic Soil Disinfestation Research Articles

Effects of Anaerobic Soil Disinfestation for Soilborne Disease and Weed Management on Baby Leaf Lettuce Performance in a High Tunnel Organic Production System

The use of high tunnels, which allows growers to extend their season and improve yields, is increasing in the Southeastern U.S., yet growers face challenges related to weed and disease management, particularly in organic systems. On-station experiments were conducted during fall 2021 and spring 2022 in a split-plot design to assess the efficacy of anaerobic soil disinfestation (ASD) in high tunnels for the organic production of direct-seeded baby leaf lettuce. Soil treatments (ASD, Compost, and Control) and lettuce types (romaine and oakleaf cultivars) were included in whole plots and subplots, respectively. The ASD-treated soils received molasses and granular organic fertilizer as carbon and nitrogen sources. The Compost treatment involved the application of yard waste-based compost and the same organic fertilizer, while the Control soils received organic fertilizer only. The ASD treatment period lasted 8 days rather than the typical 21-day period evaluated in Florida. Crop yield, biometrics (leafy dry matter content, specific leaf area, specific leaf weight), and lettuce quality attributes (leaf color, soluble solids content, total titratable acidity, ferric reducing antioxidant power, ascorbic acid content, total phenolics) were assessed following harvest. In both trials, numerical differences in lettuce fresh weight yield between soil treatments were evident, though not statistically significant. Differences in leaf quality attributes were driven by lettuce cultivar rather than soil treatments. Bottom rot incidence caused by Rhizoctonia solani was reduced by 93% and 87% in the ASD-treated plots compared with the Compost- and Control-treated soils during the spring 2022 trial. The ASD-treated soils had a reduced population density of broadleaf weeds in both baby leaf lettuce production trials. The current study presents novel evidence of the potential of integrating ASD into HT organic production systems without reducing the yield and quality attributes of direct-seeded baby leafy greens compared with common grower practices.

Evaluation of Anaerobic Soil Disinfestation to Reduce Soilborne Diseases in Soilless and Soil-Based Substrates for Specialty Cut Flower Production.

Anaerobic soil disinfestation (ASD) is a nonchemical soil treatment where an easily decomposable carbon source is incorporated into soil, which is then irrigated to saturation and tarped to create anaerobic conditions, which prompts shifts in the soil microbiota from aerobes to anaerobes. ASD has been tested successfully for soilborne disease management in a variety of cropping systems but has not been sufficiently investigated in ornamentals. In this study, ASD was evaluated in soil-based and soilless substrates commonly used in specialty cut flower production using two model pathosystems: Rhizoctonia solani-Zinnia elegans and Phytophthora drechsleri-Gerbera jamesonii. Each substrate was mixed with pathogen-infested vermiculite and amended with either wheat bran, tomato pomace, or soybean meal as the carbon source. Amended substrates were incubated at 25°C for 4 weeks and used as growing substrates for the two crops mentioned above, which were monitored weekly for disease development for up to 5 weeks posttransplant. Additional experiments tested the effect of plant age and inoculum concentration in the substrate on ASD efficacy. Results showed that ASD has the potential to be deployed successfully for the control of Rhizoctonia stem rot in both substrates. Conversely, ASD was not effective at controlling Phytophthora crown rot on gerbera daisy in any of the experiments conducted in this study. More research is needed to understand the influence of carbon amendments, inoculum thresholds, and environmental conditions on ASD efficacy.

Agriculture against the wall: barriers and opportunities for agroecological transitions in California’s industrial agricultural landscapes

ABSTRACT Agroecology emphasizes a shift from low diversity, high chemical input farming to more biodiverse agroecosystems cultivated in conjunction with natural ecosystem processes and embedded in socially just relationships. Yet achieving such agroecological transitions presents enormous challenges in industrial agricultural landscapes dominated by consolidation and overproduction. We examine both the challenges and the opportunities for agroecological transition in one particular industrial agricultural context: the fumigant-dependent strawberry production of California’s Central Coast. We do so by exploring adoption of Anaerobic Soil Disinfestation (ASD), an agroecological alternative to fumigation which has shown considerable promise but has been historically underutilized. Building on previously identified “domains of agroecological transformation,” we characterize the enabling and disabling conditions for agroecological transitions in California’s agricultural landscape. Through semi-structured interviews with farmers, extensionists, and industry stakeholders we uncover significant regime lock-ins: most prominently insecure land tenure and unequal access to land, unequal systems of exchange, and a culture that favors silver bullet narratives and top-down knowledge transfer; as well as drivers of change. The case of ASD, we conclude, reveals that technology-led agroecological transitions will have difficulty succeeding unless they are embedded in broader efforts to transform the social and political relationships of industrial agriculture.

Anaerobic Soil Disinfestation and Vermicompost to Manage Bottom Rot in Organic Lettuce.

Rhizoctonia solani Kühn (teleomorph: Thanatephorus cucumeris [Frank] Donk) is an aggressive soilborne pathogen with a wide host range, survives saprophytically between crops presenting a challenge for organic vegetable farmers that lack effective management tools. A two-year field experiment was conducted at two organic farms to compare anaerobic soil disinfestation (ASD) and worm-cured compost (vermicompost) to manage bottom rot caused by R. solani subspecies AG1-IB in field-grown organic lettuce (Lactuca sativa). At each farm, four replicate plots of seven treatments were arranged in a randomized complete block design. Randomization was restricted by grouping treatments to evaluate ASD, and treatments to evaluate vermicompost in starter plugs. ASD experiment treatments were three different ASD carbon sources that are commonly used and widely available to local farmers in Vermont: compost, cover crop residues, and poultry manure fertilizer, and a tarped control. Vermicompost experimental treatments were vermicompost compared to two types of controls: a commercial biocontrol product (RootShield® PLUS+G), and unamended (untarped control). This study demonstrated that the ASD method is achievable in a field setting on Vermont farms. However, neither ASD nor vermicompost produced significant disease suppression or resulted in higher marketable yields than standard growing practices. Given the laborious nature of ASD, it is likely more appropriate in a greenhouse setting with high value crops that could especially benefit from being grown in plastic tarped beds (e.g., tomatoes, strawberries). This study is the first known attempt of field-implemented ASD for soil pathogen control in the northeastern USA.

Effects of anaerobic soil disinfestation on antibiotics, human pathogenic bacteria, and their associated antibiotic resistance genes in soil

Despite the widespread use of anaerobic soil disinfestation (ASD) to improve soil health, its impact on soil antibiotics, human pathogenic bacteria (HPB) and antibiotic resistance genes (ARGs) remains unclear. To address this knowledge gap, we conducted an incubation study in manure-amended soil with three treatments: no treatment (CK), crop straw only (CS), and CS combined with water flooding and plastic covering (ASD). The results showed that ASD increased the concentrations of tetracycline by 27 % and β-lactam by 22 %, while depleting macrolide by 51 %. Furthermore, ASD increased the numbers of potential HPB species and genes by 4.1 % and 23 %, respectively. Co-occurrence network analysis demonstrated intensified cooperation and competition among HPB and HNPB (human non-pathogenic bacteria) species under ASD, favoring the prevalence of HPB species such as Escherichia coli, Streptococcus equi, Clostridium tetani, and Bacillus anthracis. Potential HPB species in Proteobacteria exhibited negative correlations with macrolide and β-lactam antibiotics, whereas those in Firmicutes showed positive correlations with tetracycline antibiotics, suggesting that specific bacterial taxa contributed to the production and degradation of antibiotics in response to ASD. Interestingly, CS mitigated the presence of ARGs in soil, while ASD further amplified this reduction, almost eliminating nalC, acrB, OXA-60, VIM-7, tetL, and tetQ. The variation in ARG profiles (91.7 %) could be explained by antibiotics, HPB, and HNPB species, indicating their collective contribution to reducing soil ARGs under ASD. Moreover, host prediction and network analysis revealed that, compared with CK, where potential HPB species were the main carriers of ARGs, soil ARGs were less frequently carried by potential HPB species after ASD, indicating a reduction in the collaborative dissemination of HPB and ARGs in manured soil. In conclusion, ASD provides a promising strategy for mitigation of soil biologic contamination, which can have profound significance for environmental safety and agricultural sustainability.

Optimization of the Use of Industrial Wastes in Anaerobic Soil Disinfestation for the Control of Fusarium Wilt in Strawberry.

Anaerobic soil disinfestation (ASD) is proposed as an alternative to the use of chemical fumigants against Fusarium wilt in strawberry crops. Different residual wastes (rice bran, fishmeal, and residual strawberry extrudate) were assessed as amendments for ASD. Two different concentrations and two incubation durations were tested in growth chamber trials. The abundance of several microbial groups was noted before and after the treatments. Strawberry plants were grown in the treated soils to record Fusarium wilt disease severity. The population density of F. oxysporum increased after ASD in most amendments with rice bran and residual strawberry extrudate. Changes in Trichoderma spp., copiotrophic bacteria, and Streptomyces spp. populations were observed after anaerobiosis treatments and plant trials. A reduction in the disease severity was achieved in ASD-treated soils with 20 t/ha of rice bran at both 25 and 60 days of incubation, but not when using a 13.5 t/ha dose. Similarly, treatments using 19.3 t/ha of fishmeal for both incubation durations were able to reduce disease severity. In contrast, a severity reduction was only obtained in soils treated with 25.02 t/ha of the residual strawberry extrudate and incubated for 60 days in anaerobic conditions. Two of the three by-products tested were able to reduce Fusarium wilt symptoms in strawberry plants after an ASD-treatment period of only 25 days. Accordingly, the technique seems promising for strawberry growers in Huelva, Spain, and highly sustainable by giving value to residues produced in surrounding areas.

Brewer’s Spent Grain with Yeast Amendment Shows Potential for Anaerobic Soil Disinfestation of Weeds and Pythium irregulare

Anaerobic soil disinfestation (ASD) is a promising alternative to chemical fumigation for controlling soilborne plant pathogens and weeds. This study investigated the impact of brewer’s spent grain (BSG), a locally available carbon source, on various weed species and the oomycete pathogen Pythium irregulare in ASD. Two greenhouse studies were conducted using BSG and yeast at full and reduced rates in a completely randomized design with four replicates and two runs per study. In both studies, ASD treatments significantly decreased the seed viability of all weed species and the Pythium irregulare inoculum, while promoting higher cumulative anaerobicity compared to the non-treated control. The addition of yeast had a notable effect when combined with BSG but not with rice bran. When used in reduced carbon rates, yeast supplementation enhanced the efficacy of BSG, providing comparable control to the full rate for most weed species, including redroot pigweed, white clover, and yellow nutsedge. Interestingly, no ASD treatment affected the soil temperature. Furthermore, BSG treatments caused higher concentrations of volatile fatty acids compared to ASD with rice bran and the non-treated control. This finding suggests that the inclusion of yeast in ASD shows potential for reducing the carbon input required for effective soil disinfestation.

Effect of Anaerobic Soil Disinfestation on Tuber Vitality of Yellow Nutsedge (Cyperus esculentus)

Cyperus esculentus is considered the sixteenth worst weed in the world. The weed causes huge losses in arable crops. Current control strategies are based on combinations of chemical and mechanical methods, repeated over years, and aim to deplete the belowground bud bank. However, this is a slow process. Anaerobic soil disinfestation (ASD) using readily decomposable carbon sources may be a promising innovative method to quickly deplete the bud bank. This study investigated the effect of ASD with fresh grass clippings (dosage of 80 tonnes ha−1) differing in C:N ratio and Herbie® (consists of organic by-products from the food processing industry, dosage of 25 tonnes ha−1) on the vitality of small and large C. esculentus tubers buried at three depths (5, 15, and 30 cm) into two soils differing in soil type and soil moisture content. Their effects were compared with the effect of chemical soil disinfestation (CSD) with metam-sodium (153 kg ha−1). ASD with Herbie® showed at least equal performance compared with CSD with metam-sodium, with reductions in tuber vitality up to 97.5%. The performance of ASD with grass clippings was less consistent across soils and was affected by the C:N ratio of the grass. Both ASD and CSD showed the highest performance in moist, sandy soil and on small tubers. ASD is an effective and promising method to quickly deplete the C. esculentus bud bank, provided that the soil is sandy and moist, the carbon source has a C:N ratio of about 10, and the incorporation depth is at least 25 cm. To foster the implementation of ASD, future research should evaluate its performance consistency across environments and years.

Probiotic Bacteria, Anaerobic Soil Disinfestation, and Mustard Cover Crop Biofumigation Suppress Soilborne Disease and Increase Yield of Strawberry in a Perennial Organic Production System.

Black root rot complex and crown rot of strawberry caused by soilborne fungi limit sustainable strawberry production in the northeastern United States, especially in perennial systems, including matted row and plasticulture. As pathogen populations build up over time in the rhizosphere and infect the root system, feeder roots are pruned, which diminishes nutrient and water uptake and causes stunted plant growth or death. Alternative management options are needed for many organic and small growers who can't use chemical fumigants due to new regulations and potential health hazards. Strawberry plug plants were grown on beneficial microbe-inoculated or uninoculated planting mix followed by transplanting in fruiting field plots that either was biofumigated with mustard cover crop (MCC), anaerobically disinfested (ASD), or left untreated. Different combinations of plug plants and field plot treatments were used to determine the efficacy of individual treatments or synergistic effects from combination treatment. Plug plants were transplanted in pretreated plastic mulched raised beds and grown following a typical organically recommended production system. Plants grown on TerraGrow (TG)-inoculated planting mix showed enhanced plant vigor in the fruiting field compared with untreated plants. Weeds that grew through planting holes were significantly (P ≤ 0.045) suppressed in ASD plots compared with untreated plots in the first year. Plants treated with a combination treatment of TG and ASD had significantly higher fruit yield in both years (2019 and 2020), although the difference was greater in the second year. Plant vigor and survival in treated plots except MCC were also significantly higher in the second year compared with the untreated control. Suppression of pathogenic microbes and plant vigor improvement in treated plots appear to be the factors providing beneficial effects and higher net economic return. Taken together, our results suggest that a combination of beneficial microbes and ASD could be an alternative to synthetic fumigation in a perennial strawberry production system.

Anaerobic soil disinfestation with ethanol or sucrose reduces the viability of Meloidogyne javanica and Stromatinia cepivora

Anaerobic soil disinfestation (ASD) is an ecological alternative to chemical soil fumigation. However, little is known about the potential of this technique for the management of Meloidogyne javanica and Stromatinia cepivora. To test the hypothesis that ASD reduces the viability of these two pathogens, we assessed ethanol (5%, v:v) and sucrose (5%, m:v) as carbon sources for ASD, for an incubation period of three weeks. Twenty kilograms of soil naturally infested with M. javanica (82 ± 43 J2 100 cm-3 soil) were placed into a plastic container. Polyester traps, each with 15 S. cepivora sclerotia, were buried at 10 and 20 cm depth per container. ASD with diluted ethanol or sucrose (5% v:v or m:v) was compared to the untreated control (UTC), chemical fumigant metam sodium (MS), and soil saturation with water. In comparison to the UTC, ASD using ethanol reduced the numbers of J2 in soil and the galls in tomato roots by more than 93%, a degree of suppression similar to that achieved when using MS. The viability of sclerotia of S. cepivora was reduced by ASD using ethanol or sucrose from 38.12 to 58.1% compared to the UTC. ASD for three weeks using ethanol or sucrose (5%) reduces the viability of M. javanica and S. cepivora in the microcosm.

Response of Strawberry Fruit Yield, Soil Chemical and Microbial Properties to Anaerobic Soil Disinfestation with Biochar and Rice Bran

Organic materials added to soil create anaerobic conditions that can reduce soil-borne pathogens that reduce the yield and quality of agricultural crops. Anaerobic soil disinfestation (ASD) requires relatively large quantities of readily available, inexpensive organic materials. We evaluated the impact of ASD with rice bran and biochar organic materials on changes to the soil’s physicochemical properties, microbial taxa, and strawberry fruit yield. We found that the organic materials applied at different dose rates significantly increased the control effect of the soil Fusarium spp. and Phytophthora spp. to 69–99% and 63–98%, respectively. In addition, ASD significantly increased soil organic matter and ammonium nitrogen contents. Strawberry yield also increased significantly after ASD treatment with biochar applied at 10 t/ha, which was positively correlated with increased soil nutrients and a significant reduction in pathogens. High-throughput gene sequencing showed that ASD significantly increased the abundance of some beneficial microorganisms such as Bacillus, Pseudomonas, and Mortierella, possibly due to changes in the soil’s physicochemical properties that favored their survival. We found for the first time that biochar applied at 10 t/ha could create anaerobic conditions that effectively reduced soil-borne pathogens and increased crop yield.

Short‐term responses of soil organic carbon and chemical composition of particle‐associated organic carbon to anaerobic soil disinfestation in degraded greenhouse soils

AbstractAnaerobic soil disinfestation (ASD) is a short‐term practice to conquer soil degradation, yet its effects on soil organic carbon (SOC) and its composition remain unclear. A field experiment was conducted in degraded greenhouse soils (C3) that were previously used for production of vegetable (VP) and flower (FP), with three treatments (i.e., control, ST [maize straw addition [C4]] and ASD [both ST and water flooding]) for 21 days. Results indicated that the control soil lost 1.3 Mg C ha−1 in VP and 0.94 Mg C ha−1 in FP, while ST increased SOC storage by over 1.0 Mg C ha−1 in both VP and FP. The ASD increased SOC storage by over 2.0 Mg C ha−1 by forming new SOC and decreasing old SOC loss. Additionally, ASD increased OC concentration in particulate size fractions, particularly in particulate organic matter (POM) with lower basal respiration, and higher hydrophobicity as indicated by an increased ratio of C–H/C=O from POM observed by FTIR. The SEM‐EDS found an enhanced C signal in particle size fractions, especially in POM. Overlap of C, O, Si, Ca, and Fe in mineral‐associated organic matter upon ASD indicated the possible crosslinking between intra‐OC and minerals containing O, Si, Ca, and Fe. The ASD also controlled soil salinization and the pathogen Fusarium oxysporum, resulting in increased tomato yields in both VP and FP. Overall, apart from increasing tomato yields, ASD can enhance SOC storage by increasing OC in particle size fractions within a short term.

Comprehensive Control System for Ginger Bacterial Wilt Disease Based on Anaerobic Soil Disinfestation

Bacterial wilt is a soil-borne disease that causes severe damage in ginger-growing regions of Japan (eight prefectures in the Shikoku, Kyushu, and Honshu regions). Because the pathogen Ralstonia pseudosolanacearum usually lives in deeper soil and infects host plants via the roots, it is not easy to eliminate even with chemical pesticides (such as soil fumigants). In our previous study, we found that anaerobic soil disinfestation with diluted ethanol (Et-ASD) effectively eliminated this pathogen. We conducted field experiments to confirm the effectiveness of Et-ASD in a ginger monoculture system. Eight trials were conducted in seven different ginger fields from spring to autumn. Excluding one trial in early spring, seven trials in summer successfully eliminated the pathogen from the field soil (below the detection limit by the developed sensitive bio-PCR method), and no disease recurrence was observed after ASD treatment. In addition, other useful methods for controlling the disease were explored, including proper field management after the disease outbreak and the disinfection of seed rhizomes. Based on these results, a comprehensive control system for bacterial wilt disease in ginger was developed.

Carbon Sources for Anaerobic Soil Disinfestation in Southern California Strawberry

Anaerobic soil disinfestation (ASD) has been adopted in over 900 ha in California strawberry production as an alternative to chemical fumigation. Rice bran, the predominant carbon source for ASD, has become increasingly expensive. In 2021–22 and the 2022–23 field studies, we evaluated 20–30% lower-priced wheat middlings (Midds) and dried distillers’ grain (DDG) at 21,800 kg ha−1 (in 2021) and 17,000 kg ha−1 (in 2022) as alternative carbon sources to rice bran. The study was placed at Santa Paula, California in September of each season in preparation for strawberry planting in October. Soil and air temperatures were 18–26 °C during that time. After the incorporation of carbon sources into the top 30 cm of bed soil, beds were reshaped, and irrigation drip lines were installed and covered with totally impermeable film (TIF) to prevent gas exchange. Beds were irrigated to saturate the bed soil within 48 h after TIF installation. Anaerobic conditions were measured with soil redox potential (Eh) sensors placed at 15 cm depth in all plots. Both DDG and Midds plots maintained Eh at −180 to 0 mV during the two ASD weeks, while untreated soil was aerobic at 200 to 400 mV. Permeable bags with inocula of Macrophomina phaseolina, a lethal soil-borne pathogen of strawberry, and tubers of a perennial weed Cyperus esculentus were placed 15 cm deep in the soil at ASD initiation and retrieved two weeks later for analyses. Two weeks after that, holes were cut to aerate beds and ‘Victor’ or ‘Fronteras’ bare-root strawberries were transplanted into them. ASD with DDG reduced viable microsclerotia of M. phaseolina by 49% in the first season and 75 to 85% with both carbon sources in the second season. Both ASD treatments reduced tuber germination of C. esculentus 86–90% compared to untreated soil in one of two years. Additionally, Midds and DDG provided greater sufficiency of plant-available nitrogen and phosphorus compared to untreated soil with synthetic pre-plant fertilizer and improved fruit yields by 11–29%. ASD with these carbon sources can suppress soil pathogens and weeds and help sustain organic strawberry production in California.

Integrated Pathogen Management in Stevia Using Anaerobic Soil Disinfestation Combined with Different Fungicide Programs in USA, Mexico, and Paraguay

Stevia is a semi-perennial crop grown to obtain the diterpene glycosides in its leaves, which are processed to manufacture non-caloric sweeteners. Anaerobic soil disinfestation (ASD) and fungicide application were evaluated for the management of stevia stem rot (SSR) and Septoria leaf spot (SLS) in lab and field experiments. In 2019 and 2021, experiments using carbon sources for ASD were carried out in microplots at NCSU (Clayton, NC, USA). In 2020/21 and 2021/22 seasons, field experiments were conducted at CSAEGRO, Mexico (MX) and CEDIT, Paraguay (PY) using a 2 × 3 factorial design with two ASD treatments and three fungicide treatments. ASD treatments included soil amended with cornmeal (MX) or wheat bran (PY) at a rate of 20.2 Mg ha−1, molasses at 10.1 Mg ha−1, and non-amended controls. Fungicide applications included chemical (azoxystrobin), organic (pyroligneous acid, PA), and a non-treated control. ASD was effective in reducing sclerotia viability of Sclerotium rolfsii in laboratory assays (p < 0.0001) and microplot trials (p < 0.0001) in NC. During field trials, the viability of sclerotia was significantly reduced (p < 0.0001) in soils amended with cornmeal + molasses or wheat bran + molasses as carbon sources for ASD. While there was no significant effectiveness of ASD in reducing SLS in 2020 and 2021 or SSR in MX 2020 field trials (p = 0.83), it did exhibit efficacy on SSR in 2021 (p < 0.001). The application of fungicides was significantly effective in reducing SSR (p = 0.01) and SLS (p = 0.001), with azoxystrobin being the most consistent and PA not being statistically different from the control or azoxystrobin. The effects of ASD on fresh yield were inconsistent, exhibiting significant effects in Mexican fields in 2020 but not in 2021. During Paraguayan field trials, ASD only significantly interacted with fungicide applications in the dry yield in 2022. In the 2020/21 MX and 2020 PY field trials, fungicides were significantly effective in enhancing dry leaf yields, with azoxystrobin showing the highest consistency among treatments and PA variable control. In conclusion, utilizing ASD alongside organic fungicides can be a valuable tool for stevia farmers when the use of chemical fungicides is limited. Further research is required to enhance consistency and reduce the costs associated with these treatments under diverse edaphoclimatic conditions.

Assessing the environmental sustainability of different soil disinfestation methods used in solar greenhouse vegetable production systems

Overuse of fertilizers and irrigation and continuous monocropping is increasingly jeopardizing vegetable production in solar greenhouses as it causes serious soil degradation and the spread of soil-borne diseases. As a countermeasure, the practice of anaerobic soil disinfestation (ASD) has been recently introduced, which is carried out during the summer fallow period. However, ASD may increase N leaching and greenhouse gas (GHG) emissions when large amounts of chicken manure are applied. This study assesses how the use of different amounts of chicken manure (CM) combined with rice shells (RS) or maize straw (MS) affects soil O2 availability, N leaching, and GHG emissions during and following the ASD period. Application of RS or MS alone effectively stimulated long-lasting soil anaerobiosis without major stimulating effects on N2O emissions and N leaching. Seasonal N leaching and N2O emissions were in the ranges of 144–306 and 3–44 kg N ha−1, respectively, and were strongly increasing with increasing rates of manure application. Combining high rates of manure application with the additional incorporation of crop residues further increased N2O emissions by 56 %–90 % as compared to the standard practice of farmers (1200 kg N ha−1 CM). About 56 %–91 % of seasonal N2O emissions occurred during the ASD period, whereas N leaching mainly occurred in the cropping period (75 %–100 %). Our study shows, that for priming ASD incorporation of crop residue is sufficient and that the addition of chicken manure for ASD is not needed and should be reduced or even prohibited as it does not improve yields but stimulates the emission of the strong GHG N2O.

Analysis of Trace Volatile Compounds Emitted from Flat Ground and Formed Bed Anaerobic Soil Disinfestation in Strawberry Field Trials on California’s Central Coast

Anaerobic soil disinfestation (ASD) is emerging globally as an alternative to fumigant pesticides. To investigate ASD mechanisms, we monitored microbially produced volatile organic compounds (VOCs) and other volatile gases in situ using Fourier Transform Infrared Spectroscopy. Study plots infested with Fusarium oxysporum, Macrophomina phaseolina, and/or Verticillium dahliae included: organic flat ground (fASD, 6.7 + 13.5 megagrams per hectare, Mg/ha, rice bran/broccoli) and uncovered soil treated with mustard seed meal (MSM, 3.4 Mg/ha) at one site performed in fall of 2018; formed bed (bASD, 20 Mg/harice bran), control (UTC) and fumigant (FUM) at a second field site in fall of 2019 and 2021. Here, we present VOC diversity and temporal distribution. fASD generated 39 VOCs and GHGS, including known pathogen suppressors: dimethyl sulfide, dimethyl disulfide, and n-butylamine. bASD produced 17 VOCs and greenhouses gases (GHGs), 12 of which were also detected in fASD but in greater concentrations. Plant mortality and wilt score (fASD: 3.75% ± 4.79%, 2.8 ± 0.8; MSM: 6.25% ± 12.50%, 2.7 ± 0.3; bASD: 61.27% ± 11.26%, 4.1 ± 0.5; FUM: 13.89% ± 7.17%, 2.3 ± 0.2; UTC: 76.63% ± 25.11%, 4.3 ± 1.0) were significantly lower for fASD and MSM versus bASD and UTC (p < 0.05). Only FUM was not statistically different from fASD and MSM, and was significantly lower than UTC and bASD (bASD-FUM, p < 0.05; UTC-FUM, p < 0.05). The cumulative strawberry yield from bASD-treated plots was not different from FUM or UTC (bASD: 60.3 ± 13.6; FUM: 79.4 ± 9.19; UTC: 42.9 ± 12.4 Mg/ha). FUM yield was significantly greater than UTC (p = 0.005). These results, and to a far greater extent, additional challenges faced during both bASD trials, suggest that bASD is not as effective or as feasible at maintaining overall plant health as fASD or traditional fumigants. However, differences in management practices and environmental conditions at both sites across years cannot be fully excluded from consideration and many of our observations remain qualitative in nature.

Soil Suppressiveness Against Pythium ultimum and Rhizoctonia solani in Two Land Management Systems and Eleven Soil Health Treatments.

The soil microbiome is known to be crucial for the control of soil-borne plant diseases. However, there is still little knowledge on how to modify the soil microbiome to induce or increase disease suppressiveness. In the present study, we applied eleven soil health treatments combined with conventional and organic agricultural management in a long-term field experiment. Suppressiveness against Pythium ultimum and Rhizoctonia solani was assessed in bioassays for 2 years. In addition, the microbiome community composition and microbial abundance were determined. We found that while several treatments changed the microbial community composition compared to the control, only a combination treatment of anaerobic soil disinfestation, hair meal, and compost addition resulted in suppressiveness against P. ultimum. Pythium suppressiveness is likely to have been caused by an increased microbial abundance and activity. Moreover, the increased abundance of several bacterial taxa, such as Pseudomonas sp., Chryseobacterium sp., members of the family Chitinophagaceae, and the fungal genus Mortierella sp. and family Trichosporonaceae, was measured. There was no overall difference in suppressiveness between conventional and organic land management. Also, no suppressiveness against R. solani could be detected. Our results indicate that a treatment combining the reduction of microorganisms followed by a recovery phase with high amounts of organic amendments may be more effective in inducing suppressiveness than treatments consisting of only one of these measures.

Anaerobic Soil Disinfestation Promotes Soil Microbial Stability and Antagonistic Bacteria Abundance in Greenhouse Vegetable Production Systems

Excessive water and fertiliser inputs, as well as long-term monocropping, not only cause resource waste and environmental pollution but also drive soil degradation and the occurrence of soil-borne diseases. Anaerobic soil disinfestation (ASD) is a widely used technique in greenhouse vegetable production to replace the use of agrochemicals in disinfestation and improve product quality. While the short-term effects of ASD on the soil microbial community have been well documented in the past 15 years, only a few studies have investigated the multiseason effects of ASD, particularly on the soil microbial community composition and stability, as well as on pathogens and antagonistic microorganisms. Field experiments were conducted in three adjacent greenhouses used for tomato production for at least 20 years. Three treatments were included: CK (control: no irrigation, no plastic film covering, incorporation of chicken manure), ASD (irrigation, plastic film covering, and incorporation of rice husks), and ASD+M (ASD plus incorporation of chicken manure). Results showed that (1) ASD significantly reduced the diversity of soil bacteria and fungi and improved the complexity and stability of the soil bacterial community at the end of the ASD, but the soil microbial diversity recovered to the level before the experiment after 1.5 years. (2) Compared with CK, ASD significantly increased the relative abundance of antagonistic bacteria Bacillus, Paenibacillus and Streptomyces, decreased the relative abundance of pathogens Fusarium and the quantity of nematodes and could still effectively eliminate soil pathogens after 1.5 years. (3) Chicken manure application did not increase the pathogenic microorganisms Fusarium and nematodes, but it significantly decreased the relative abundance of antagonistic bacteria. Our results highlight that ASD not only showed an inhibitory effect on soil-borne diseases after 1.5 years but also significantly increased the relative abundance of antagonistic bacteria. However, the additional incorporation of chicken manure for ASD should be avoided due to its negative effects on the abundance of antagonistic bacteria and its contribution to environmental pollution due to N leaching and increased emissions of GHG N2O.

Fungicidal Activity of Caproate Produced by Clostridium sp. strain E801, a Bacterium Isolated from Cocopeat Medium Subjected to Anaerobic Soil Disinfestation

Anaerobic soil disinfestation (ASD) consists of the application of labile organic materials to soil, flooding, and covering the soil surface with plastic film. Anaerobic soil disinfestation is a widely used ecofriendly alternative to chemical fumigation for eliminating soil-borne plant pathogens. However, the exact mode of action of ASD has not been elucidated. In particular, the potential role of anaerobic soil bacteria in disinfestation is unclear. In this study, we isolated a predominant bacterium designated as strain E801 from cocopeat medium after laboratory-scale ASD with ethanol as the carbon source. The strain was closely related with Clostridium kluyveri, and fermentatively produced butyrate and caproate from ethanol and acetate. Interestingly, the culture supernatant of strain E801 strongly suppressed the growth of Fusarium oxysporum f. sp. lycopersici (Fol) in a pH-dependent manner. Among the volatile fatty acids produced by E801, only caproate showed significant growth suppression at pHs below 5.5. In addition, caproate eliminated Fol conidia completely at pHs 5.5 and 5.0 and suppressed Fol growth even at a low temperature (15 °C). Furthermore, cocopeat medium amended with caproate eliminated Fol conidia completely within 6 days. These results suggest that caproate is one of the key disinfestation factors in ethanol-based ASD and that the direct application of caproate to soil could be a promising strategy for rapid and stable soil disinfestation.