Bacterial community succession in pig manure anaerobic digestion and its correlation with antibiotic residues under combinations of digestion time, temperature, moisture, acidity, and alkalinity are unknown. In this study, bacterial communities and antibiotic residues in compost were analyzed under combinations of these influencing factors (digestion time, temperature, moisture, and acidity and alkalinity). The results showed a decrease in antibiotic residues in the digestion, including tetracycline, oxytetracycline, chlortetracycline, norfloxacin, ciprofloxacin, penicillin, cephalosporin, sulfamethoxypyrimidine, sulfamethazine, tylosin, and erythromycin. These combined conditions resulted in changes in the structure and composition of the dominant and rare bacterial communities. However, there were bacterial populations (containing 13 genera) that presented a stable composition. Antibiotic residue levels were significantly associated with the genus numbers of dominant bacterial communities (containing 29 genera), but not with rare and stable bacterial communities. Antibiotic residue levels were significantly negatively correlated with the abundance of microbial genes encoding carbohydrate-active enzymes, negatively correlated with the abundance of genes involved in main metabolic pathways, and positively correlated with the abundance of genes associated with resistance to environments. Our findings suggest insight into correlations between bacterial community structure and metabolism and antibiotic residues in pig manure anaerobic digestion under effects of key influencing factors.
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