Transport and loss of beam injected energetic particles (EPs) due to three-dimensional perturbations, associated with the external kink (XK) instability and fishbone-like mode (FLM), are numerically investigated utilizing the guiding center following code ORBIT for static toroidal plasmas in HL-2A. The perturbation structure for the XK is computed by the MARS-F code and then mapped to the Boozer coordinates as defined in ORBIT. The simulation shows that the EP profile experiences a significant change in the middle of the plasma column, when the XK-induced radial magnetic field perturbation amplitude, normalized by the equilibrium field, exceeds a threshold value of about . The EP transport is found to be dominated by a diffusion process instead of convection. Furthermore, by scanning the perturbation frequency as a free parameter while maintaining the XK mode structure (thus mimicking the FLM as observed in DIII-D and JT-60U tokamaks), redistribution and loss of EPs are found to be substantially enhanced due to strong resonances between the FLM and EPs, when the mode frequency exceeds a threshold value of ∼2 kHz for the case considered. For either XK or FLM, the response of passing EPs to the perturbation is dominant due to the assumed tangential neutral beam injection. Most lost EPs due to these instabilities are initially passing particles but are eventually lost through trapped orbits.