Ammonia-oxidizing Bacteria Research Articles

Soil pH-dependent efficacy of DMPP in mitigating nitrous oxide under different land uses

The emission pathways and intensities of nitrous oxide (N2O) vary across land uses, and the efficacy of mitigation measures may also differ. To investigate the key factors influencing the effectiveness of the nitrification inhibitor 3,4-Dimethylpyrazole phosphate (DMPP) in mitigating N2O under various land use conditions, we collected ten pairs of soils from tea plantations and adjacent cultivated land for laboratory incubation. As a complementary study, we conducted a meta-analysis based on 261 pairs of observations from 40 incubation studies to investigate the determinants of soil N2O mitigation by DMPP and to validate our experimental results. Results of the incubation experiment showed that DMPP was significantly less effective in mitigating N2O in tea plantation soils (73%) than in cropland soils (82%). Soil pH is a key factor influencing DMPP efficiency under different land use conditions. The lower pH of acidic tea plantation soils resulted in lower abundance and activity of ammonia-oxidizing bacteria (AOB). Under these low pH conditions, heterotrophic nitrification became an important source of N2O emissions in acidic tea plantation soils. As DMPP primarily inhibits AOB, it was less effective against heterotrophic nitrification, which likely contributed to its reduced efficacy in tea plantation soils compared to cropland soils. Our meta-analysis further confirmed the critical role of soil pH in determining DMPP effectiveness. The effect of soil pH on DMPP efficacy was mainly attributed to its regulation of heterotrophic and AOB-derived nitrification. These findings suggest that the field efficacy of DMPP in N2O abatement in tea plantations requires further investigation. Given the significant contribution of heterotrophic nitrification to N2O emissions in strongly acidic tea plantation soils, alternative N2O mitigation strategies should be explored.

Environmental Adaptability and Roles in Ammonia Oxidation of Aerobic Ammonia-Oxidizing Microorganisms in the Surface Sediments of East China Sea.

This study investigated the community characteristics and environmental influencing factors of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in the surface sediments of the East China Sea. The research found no consistent pattern in the richness and diversity of AOA and AOB with respect to the distance from the shore, indicating a complex interplay of factors. The expression levels of AOA amoA gene and AOB amoA gene in the surface sediments of the East China Sea ranged from 4.49 × 102 to 2.17 × 106 copies per gram of sediment and from 6.6 × 101 to 7.65 × 104 copies per gram of sediment, respectively. Salinity (31.77 to 34.53 PSU) and nitrate concentration (1.51 to 10.12 μmol/L) were identified as key environmental factors significantly affecting the AOA community, while salinity and temperature (13.71 to 19.50°C) were crucial for the AOB community. The study also found that AOA, dominated by the Nitrosopumilaceae family, exhibited higher gene expression levels than AOB, suggesting a more significant role in ammonia oxidation. The expression of AOB was sensitive to multiple environmental factors, indicating a responsive role in nitrogen cycles and ecosystem health. The findings contribute to a better understanding of the biogeochemical processes and ecological roles of ammonia-oxidizing microorganisms in marine sediments.

Synergetic association of hydroxyapatite-mediated biofilm and suspended sludge enhances resilience of partial nitrification/anammox (PN/A) system treating high-strength anaerobic membrane bioreactor (AnMBR) permeate

A single-stage partial nitrification/anammox (PN/A) system with biocarriers was used to treat the permeate from an anaerobic membrane reactor (AnMBR) processing organic fraction of municipal solid wastes. The suitable Ca/P ratio and high pH in the AnMBR permeate facilitated hydroxyapatite (HAP) formation, enhancing the biofilm attachment and the settleability of suspended sludge. This maintained sufficient biomass and a stable microbial structure after flushing to mitigate the free nitrous acid inhibition. Robust anammox bacteria in the biofilm and ammonia-oxidizing bacteria in the suspended sludge ensured that the PN/A system achieved an 87.3 % nitrogen removal efficiency at an influent NH4+-N concentration of 1802 mg/L. This study demonstrates that AnMBR permeate with high Ca, P and NH4+-N content is suitable for single-stage PN/A system with biocarriers due to the high resilience enhanced by HAP, offering a reference for the treatment of high-strength AnMBR permeate.

Integration of batch assays and microbial community analysis for partial nitritation and anammox process monitoring

This study investigates the feasibility of using batch assays combined with microbial community analysis to control the partial nitritation/anammox (PN/A) process. A Moving Bed Sequencing Batch Biofilm Reactor (MBSBBR) was operated over 130 days with varying ammonia influent concentrations. The highest anammox activity (22.4 mg N/gVSS∙h) was observed at an influent concentration of 200 mg N-NH4/L, correlating with high total inorganic nitrogen (TIN) removal efficiency. However, increasing the ammonia influent concentration to 340 mg N/L led to decreased anammox and nitrifying bacteria activities and reduced TIN removal efficiency. Sequencing revealed Candidatus Brocadia as the predominant genus, with its abundance correlating with TIN removal performance. High correlation coefficients (above 0.76) among batch tests highlighted the interdependence of key bacterial activities in the PN/A, emphasizing the need for a balanced microbial community for effective nitrogen removal. Batch assays provided immediate data on metabolic activities, while sequencing offered comprehensive insights into microbial community structure. Integrating these methods allowed for a holistic understanding of the microbial dynamics and their impact on process stability. This approach enhances the accuracy of wastewater treatment monitoring, aiding in the development of effective management strategies for optimizing PN/A processes.

Enhancing Rural Surface Water Remediation with Iron–Carbon Microelectrolysis-Strengthened Ecological Floating Beds

Ecological floating beds, with their compact footprint and mobility, offer a promising solution for sustainable surface water remediation in rural areas. However, low removal efficiency and instability still limit its application. In this study, iron–carbon-based fillers were integrated into ecological floating beds to investigate their impact and mechanisms in removing pollutants, including carbon, nitrogen, phosphorus, and heavy metals. Results indicate that all five fillers (activated carbon, iron–carbon fillers, sponge iron, activated carbon + iron–carbon fillers, and activated carbon + sponge iron) can completely remove orthophosphate, and the sponge iron filler system can completely remove nitrate. Then, fillers were applied to ecological floating beds, and the iron–carbon microelectrolysis (activated carbon + sponge iron filler)-enhanced ecological floating bed showed superior removal efficiency for pollutants. It achieved 95% removal of NH4+-N, 85% removal of NO3−-N, 75% removal of total phosphorus, 90% removal of chemical oxygen demand, and 90% removal of heavy metals. Typical nitrifying bacteria Nitrospira, denitrifying bacteria Denitratisoma, and a variety of bacterial genera with denitrification functions (e.g., Rhodobacter, Dechloromonas, Sediminibacterium, and Novosphingobium) coexisted in the system, ensuring efficient and robust nitrogen removal performance. These findings will provide support for the sustainable treatment of surface water in rural areas.

Nitrogen and phosphorus additions alter soil N transformations in a Metasequoia glyptostroboides plantation.

Nitrogen (N) and phosphorus (P) enrichment due to anthropogenic activities can significantly affect soil N transformations in forest ecosystems. However, the effects of N and P additions on nitrification and denitrification processes in Metasequoia glyptostroboides plantations, and economically important forest type in China, remain poorly understood. This study investigated the responses of soil nitrification and denitrification rates, as well as the abundances of nitrifiers and denitrifiers, to different levels of N and P additions in a 6-year nutrient addition experiment in a M. glyptostroboides plantation. Stepwise multiple regression analysis was used to identify the main predictors of nitrification and denitrification rates. The results showed that moderate N addition (N2 treatment, 2.4 mol·m-2) stimulated nitrification rates and abundances of ammonia-oxidizing archaea (AOA) and bacteria (AOB), while excessive N and P additions inhibited denitrification rates and reduced the abundance of nirS-type denitrifiers. AOB abundance was the main predictor of nitrification rates under N additions, whereas microbial biomass carbon and nirS gene abundance were the key factors controlling denitrification rates. Under P additions, tree growth parameters (diameter at breast height and crown base height) and AOB abundance were the primary predictors of nitrification and denitrification rates. Our study reveals complex interactions among nutrient inputs, plant growth, soil properties, and microbial communities in regulating soil N transformations in plantation forests. This study also offers valuable insights for formulating effective nutrient management strategies to enhance the growth and health of M. glyptostroboides plantations under scenarios of increasing elevated nutrient deposition.

Synergy between Nitrogen Removal and Fermentation Bacteria Ensured Efficient Nitrogen Removal of a Mainstream Anammox System at Low Temperatures.

Simultaneous partial nitrification, anammox, denitrification, and fermentation (SNADF) is a novel process achieving simultaneous advanced sludge reduction and nitrogen removal. The influence of low temperatures on the SNADF reactor was explored to facilitate the application of mainstream anammox. When temperature decreased from 32 to 16 °C, efficient nitrogen removal was achieved, with a nitrogen removal efficiency of 81.9-94.9%. Microbial community structure analysis indicated that the abundance of Candidatus Brocadia (dominant anaerobic ammonia oxidizing bacteria (AnAOB) in the system) increased from 0.03% to 0.18%. The abundances of Nitrospira and Nitrosomonas increased from 1.6% and 0.16% to 2.5% and 1.63%, respectively, resulting in an increase in the ammonia-oxidizing bacteria (AOB) to nitrite-oxidizing bacteria (NOB) abundance ratio from 0.1 to 0.64. This ensured sufficient nitrite for AnAOB, promoting nitrogen removal. In addition, Candidatus Competibacter, which plays a role in partial denitrification, was the dominant denitrification bacteria (DNB) and provided more nitrite for AnAOB, facilitating AnAOB enrichment. Based on the findings from microbial correlation network analysis, Nitrosomonas (AOB), Thauera, and Haliangium (DNB), and A4b and Saprospiraceae (fermentation bacteria), were center nodes in the networks and therefore essential for the stability of the SNADF system. Moreover, fermentation bacteria, DNB, and AOB had close connections in substrate cooperation and resistance to adverse environments; therefore, they also played important roles in maintaining stable nitrogen removal at low temperatures. This study provided new suggestions for mainstream anammox application.

Microbiome signature of different stages of hypoxia event in Wonmun Bay

We investigated how microbial communities associated with different hypoxic stages respond to environmental changes across three water depths in Wonmun Bay, South Korea. Analysis of temperature, salinity, dissolved oxygen (DO), and nutrient concentrations revealed prominent seasonal shifts and strong stratification during summer hypoxia. Metabarcoding of prokaryotic 16 S rRNA genes and phototrophic eukaryotic chloroplasts along with quantitative PCR (qPCR) revealed variations in the abundance and composition of these communities. Chloroplast 16 S sequences in May were dominated by land plants (93% of Embryophyta), contrasting with the diverse phytoplankton taxa detected in other months. The water communities in May also had higher total microbial abundance than other months but significantly lower alpha diversity. These results suggest a major influence of freshwater discharge on water communities, pre-conditioning for hypoxia events by promoting organic matter decomposition coupled with DO consumption in bottom water. Subsequently, distinct microbial communities were observed across depths during hypoxia in June and July, while less variability was detected among different depths in September and later months when hypoxia events disappeared. Principal Coordinate analysis (PCoA) demonstrated the distinct patterns of microbial communities in May, June, and July from other months. Both sulfur-oxidizing and sulfate-reducing bacteria (SRB) were prevalent in June while the increase of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) was observed in mid and bottom water in July. This data suggests the intricate interaction between sulfur and nitrogen-cycling microbes during the hypoxia events in Wonmun Bay. In conclusion, this study provides valuable insights into the microbial community responses to the varying environmental conditions at different stages of hypoxia events in eutrophic coastal ecosystems.

Scavenging of reactive oxygen species in Candidatus Brocadia fulgida through nanocompartments

The antioxidant defense mechanisms for anaerobic ammonia oxidation (anammox) bacteria are still unclear. In this study, the potential antioxidant ability of nanocompartments in Candidatus Brocadia fulgida to typical reactive oxygen species (ROS) was investigated. The results showed that the copies of genes involved in anammox central metabolism were inhibited with hydrogen peroxide (H2O2), while the genes encoded putative anti-oxidative protein (nanocompartments and cargo HAO) up-regulated. The genetically engineered bacteria grew better and maintained the lower ROS levels (65.60 %-78.07 %) and higher electron transport activities (∼5–21 times) than the wild bacteria under H2O2 stimulus. Molecular docking confirmed that nanocompartment proteins could provide diverse sites to bind with H2O2 based on heme as the redox center. Additionally, the nanocompartments induced up-regulation of multiple protective pathways for coping with oxidative stress from H2O2, including antioxidant enzymes and other non-enzymatic pathways. Thus, the heme-containing nanocompartments presented great potential in preventing and relieving oxidative stress.

Achieving nitrite shunt using in-situ free ammonia enriched by natural zeolite: Pilot-scale mainstream anammox with flexible nitritation strategy

The mainstream partial nitritation/anammox (PN/A) process represents a significant innovation in decarbonizing municipal wastewater treatment. However, its implementation is considerably hampered by the challenge of stable nitrite supply. In this study, a pilot-scale PN/A system receiving real sewage (20 m3) was operated at room temperature for nearly one year. Remarkable PN performance with relatively high nitrite accumulation ratio of 75.04 ± 10.05 % was obtained via in-situ free ammonia (FA) strategy. The ammonium concentration enriched in the zeolite increased significantly by 548.8 times compared to that in the aqueous phase by ion exchange. This substantial increase robustly inhibited nitrite-oxidizing bacteria (NOB), resulting in high relative abundance ratio of ammonia-oxidizing bacteria (AOB) to NOB of 37.93 ± 12.61 in the zeolite biofilm, compared to 10.22 ± 1.67 in suspended floc sludge. The significant differences in FA concentrations between zeolite biofilm and suspended floc sludge resulted in distinct spatial distribution disparities of AOB and NOB, which were central to achieving stable nitrite accumulation without complex multiple selective pressures. Consequently, compliant effluent with total nitrogen of 10.91 ± 4.23 mg N/L was achieved at 10.4-31.1 °C without external carbon source addition. The biocarriers in the anammox process played a key role in enhancing functional genes and electron flow, supporting anammox-dominated nitrogen removal. This study presents a flexible and adaptable strategy for mainstream nitrite shunting, highlighting its potential for large-scale implementation of mainstream anammox treatment.

Effects of potassium-mediated electrical communication inhibition on nitrogen removal in microbial fuel cells

Potassium ion signaling mediates microbial communication in electroactive biofilms within microbial fuel cells (MFCs), but its role in nitrogen removal remains unclear. This study investigated the impact of inhibiting potassium signaling on nitrogen removal in MFCs using tetraethylammonium chloride (TEA) as an inhibitor. Results demonstrated that 5 mM and 10 mM TEA reduced the maximum power generation of MFCs from 77.95 mW/cm2 to 57.18 mW/cm2 and 48.23 mW/cm2, respectively. Correspondingly, total nitrogen (TN) removal efficiency was decreased from 46.57 ± 1.01% to 35.93 ± 0.63% and 38.97 ± 0.74%, respectively. This decline was attributed to inhibited potassium ion signaling, which compromised the electrochemical performance of the MFC and hindered the nitrogen removal process. The relative abundance of exoelectrogen Geobactor decreased from 15.37% to 5.17% and 8.05%, while the relative abundance of cathodic nitrifying bacteria Nitrosomonas decreased from 17.87% to 4.92% and 3.63% under 5 mM and 10 mM TEA. These findings underscore the crucial role of potassium ion signaling in enhancing the bioelectrochemical nitrogen removal process in MFCs.

Exploring the promoting behavior of weak electric mediation on indole and pyridine biodegradation under anaerobic condition

Indole and pyridine, which are highly produced refractory compounds in the industrial wastewater, exhibit poor degradation capabilities in natural environments. In this study, we developed an anaerobic digestion system coupled with weak electric mediation (ED), and investigated the promoting effect of weak electricity on indole and pyridine biodegradation. The degradation characteristics were systematically explored, and the results showed that the degradation rate and mineralization of indole and pyridine were significantly enhanced, the production of CH4 was increased 1.4-fold, and the optimal voltages were 1.0 V and 0.8 V in the ED, respectively. Moreover, simultaneous removal of carbon and nitrogen was achieved. Gas chromatography–mass spectrometry analysis verified the transformation products, and possible pathways were proposed. Several byproducts of indole and pyridine were identified, with oxindole and glutaric dialdehyde being the main metabolites, respectively. Additionally, density functional theory (DFT) analysis was performed to investigated the radical indices and stabilities of the molecules to further confirm the degradation pathway. Microbial structure analysis demonstrated that the electrically mediated enhanced metabolism and activity of functional microbes, led to the promotion of indole and pyridine mineralization. Moreover, such species as degrading bacteria (Alicycliphilus, Shinella) and electroactive bacteria (Achromobacter), anaerobic ammonia-oxidizing bacteria (SM1A02), and denitrifying bacteria (Thiobacillus) coexisted. This study demonstrates that weak electric mediation is a promising methodology for enhancing the removal of indole and pyridine from wastewater under anaerobic conditions.

Predictive Functional Profiling Reveals Putative Metabolic Capacities of Bacterial Communities in Drinking Water Resources and Distribution Supply in Mega Manila, Philippines

Assessing bacterial communities across water resources is crucial for understanding ecological dynamics and improving water quality management. This study examines the functional profiles of bacterial communities in drinking water resources in Mega Manila, Philippines, including Laguna Lake tributaries, pre-treatment plant sites, groundwater sources, and post-treatment plant sites. Using eDNA sequencing, flux balance analysis, and taxonomy-to-phenotype mapping, we identified metabolic pathways involved in nutrient metabolism, pollutant degradation, antibio- tic synthesis, and nutrient cycling. Despite site variations, there are shared metabolic pathways, suggesting the influence of common ecological factors. Site-specific differences in pathways like ascorbate, aldarate, and phenylalanine metabolism indicate localized environmental adaptations. Antibiotic synthesis pathways, such as streptomycin and polyketide sugar unit biosynthesis, were detected across sites. Bacterial communities in raw and pre-treatment water showed potential for pollutant degradation such as for endocrine-disrupting chemicals. High levels of ammonia-oxidizing and sulfate-reducing bacteria in pre- and post-treatment water suggest active nitrogen removal and pH neutralization, indicating a need to reassess existing water treatment approaches. This study underscores the adaptability of bacterial communities to environmental factors, as well as the importance of considering their functional profiles in assessing drinking water quality resources in urban areas.

Impacts of Biochar and Gypsum on Ammonia-Oxidizing Microorganisms in Coastal Saline Soil

Nitrification is the core step of the soil nitrogen cycle and directly affects the nitrogen use efficiency in agricultural systems. Biochar and gypsum are two important soil amendments widely used in coastal saline farmland. However, little is known about their effects on nitrification and ammonia-oxidizing microorganisms. A one-year pot experiment with three treatments including biochar application (BC), gypsum application (SG), and no amendment (CK) was conducted, and the responses of the nitrification rate, amoA gene copies, and the diversity and community structure of ammonia-oxidizing archaea (AOA) and bacteria (AOB) to biochar and gypsum were evaluated. The results indicated that biochar and gypsum application both resulted in alterations to the soil properties. They both had inhibiting effects on nitrification and AOB amoA gene copies, whereas they had no significant effect on AOA amoA gene copies. Biochar had no significant effect on the diversity indexes of AOA, but it significantly reduced the Shannon index of AOB. Meanwhile, gypsum had no significant influence on the diversity indexes of both AOA and AOB. Biochar and gypsum did not significantly affect the community structure of AOA but did induce changes in that of AOB. In detail, biochar significantly enhanced the relative abundance of the dominant cluster Nitrosospira, whereas gypsum led to a notable increase in the relative abundance of unclassified_o_Nitrosomonadales. The Shannon index of AOB had a significant negative correlation with soil TOC, TN, and NH4+ content, and soil pH was the first primary environmental factor that affected the AOB community structure. In conclusion, biochar and gypsum inhibited nitrification by suppressing the activities of AOB and changed the diversities and community structure of AOB by altering related soil properties.

Efficient nitrogen removal of decentralized rural sewage: Pilot-scale study of a novel push-flow coupled bio-ecological system

The performance and mechanisms for pollutant removal were investigated in an extended pilot-scale operation. Results demonstrated that the PF-EFB system maintained stable and efficient performance after over 450 days of continuous operation. Under various operating conditions, the total nitrogen (TN) concentration was reduced to <2 mg/L, and the removal rate exceeded 90 %. The effluent chemical oxygen demand (COD) concentration remained below 40 mg/L. Additionally, a combination of nitrogen transformation and molecular biology analyses was conducted to explore the mechanisms. The key bacterial groups driving system performance were aerobic and anoxic nitrifying bacteria, which dominated the microbial population. Microbial community analysis showed that the abundance of aerobic denitrifying bacteria in the middle of the system was 40.5 %, while the abundance of anoxic denitrifying bacteria at the end was 19.0 %. This spatial variation in the distribution of aerobic and anoxic denitrifying bacteria along the flow direction inside the reactor, driven by environmental factors, is key to the system's efficient denitrification. Overall, the PF-EFB system effectively addressed challenges posed by water flow fluctuations and enhanced nitrogen removal efficiency. This innovative system offers significant benefits and serves as a valuable reference for rural sewage treatment.

Assessment of oxygen kinetic parameters for closely related ammonia-oxidizing bacteria.

The reaction kinetics of lithotrophic ammonia-oxidizing bacteria (AOB) are strongly dependent on dissolved oxygen (DO) as their metabolism is an aerobic process. In this study, we estimate the kinetic parameters, including the oxygen affinity constant (Km[O2]) and the maximum oxygen consumption rate (Vmax[O2]), of different AOB species, by fitting the data to the Michaelis-Menten equation using nonlinear regression analysis. An example for three different species of Nitrosomonas bacteria (N. europaea, N. eutropha, and N. mobilis) in monoculture is given, finding a Km[O2] of 0.25±0.05mg l-1, 0.47±0.09mg l-1, and 0.28±0.08mg l-1, and a Vmax[O2] of 0.07±0.04 pg h-1cell-1, 0.25±0.06 pg h-1cell-1, and 0.02±0.001 pg h-1cell-1 for N. europaea, N. eutropha, and N. mobilis, respectively. This study shows that of the analyzed AOB, N. europaea has the highest affinity towards oxygen and N. eutropha the lowest affinity towards oxygen, indicating that the former can convert ammonia even under low DO conditions. These results improve the understanding of the ecophysiology of AOB in the environment. The accuracy of mathematically modelled ammonia oxidation can be improved, allowing the implementation of better management practices to restore the nitrogen cycle in natural and engineered water systems.

Impacts of cefalexin on nitrite accumulation, antibiotic degradation, and microbial community structure in nitrification systems

The intensive use of various antibiotics for clinical and agricultural purposes has resulted in their widespread use in wastewater treatment plants. However, little research has been conducted on the effects of antibiotics on nitrite accumulation, antibiotic degradation pathways, or the microbial community structure in nitrification systems. In this study, a laboratory-scale sequencing batch reactor was used to treat wastewater containing cefalexin (CFX) at different doses (5, 10, 15, and 20 mg/L). The results showed that the nitrification performance was gradually inhibited with increasing CFX concentration. Ammonia-oxidizing bacteria (AOB) are more tolerant to CFX than nitrite-oxidizing bacteria (NOB). Under 15 mg/L of CFX, NOB were completely suppressed, whereas AOB were partially inhibited, as evidenced by an ammonium removal efficiency of 60 % and a 90 % of nitrite accumulation ratio. The partial nitritation was achieved. CFX can be degraded into 2-hydroxy-3phenylpyrazine and cyclohexane through bacterial co-metabolism, and CFX degradation gradually diminishes with decreasing nitrification performance. The abundance of Nitrospira gradually decreased with increasing CFX concentration. Ferruginibacter, Hydrogenophaga, Thauera, and Pseudoxanthomonas were detected at relative abundances of 13.2 %, 0.4 %, 0.9 %, and 1.3 %, respectively, indicating their potential roles in antibiotic degradation. These findings provide insight into the interactions between antibiotics and microbial communities, which are beneficial for a better understanding of antibiotic degradation in nitrification systems.

Achieving partial nitrification by sludge treatment using sulfide: Optimal conditions determination, long-term stability evaluation and microbial mechanism exploration

This study proposes an innovative strategy for achieving PN in synthetic domestic wastewater by side-stream sludge treatment using sulfide as the sole control factor. By conducting controllable batch experiments and response surface analysis, optimal sulfide treatment conditions were firstly determined as 90 mg/L of sulfide, 7.5 of pH, 100 rpm of rotation and 12 h of treatment time. After treatment, half of ammonia oxidizing bacteria (AOB) activity remained, but nitrite oxidizing bacteria (NOB) activity was barely detected. Nitrite accumulation rate of long-term running PN steadily reached 83.9 % with 99.1 % of ammonia removal efficiency. Sulfide treatment increased community diversity and facilitated stability of microbiota functioning with PN phenotype, which might be sustained by the positive correlation between ammonia oxidation gene (amoA) and sulfur oxidation gene (soxB). Correspondingly, the network analysis identified the keystone microbial taxa of persistent PN microbiota as Nitrosomonas, Thauera, Truepera, Defluviimonas and Sulitalea in the later stage of long-term reactor.

Chromolaena odorata affects soil nitrogen transformations and competition in tropical coral islands by altering soil ammonia oxidizing microbes

Invasive plants can change the community structure of soil ammonia-oxidizing microbes, affect the process of soil nitrogen (N) transformation, and gain a competitive advantage. However, the current researches on competition mechanism of Chromolaena odorata have not involved soil nitrogen transformation. In this study, we compared the microbially mediated soil transformations of invasive C. odorata and natives (Pisonia grandis and Scaevola taccada) of tropical coral islands. We assessed how differences in plant biomass and tissue N contents, soil nutrients, N transformation rates, microbial biomass and activity, and diversity and abundance of ammonia oxidizing microbes associated with these species impact their competitiveness. The results showed that C. odorata outcompeted both native species by allocating more proportionally biomass to aboveground parts in response to interspecific competition (12.92 % and 22.72 % more than P. grandis and S. taccada, respectively). Additionally, when C. odorata was planted with native plants, the available N and net mineralization rates in C. odorata rhizosphere soil were higher than in native plants rhizosphere soils. Higher abundance of ammonia-oxidizing bacteria in C. odorata rhizosphere soil confirmed this, being positively correlated with soil N mineralization rates and available N. Our findings help to understand the soil N acquisition and competition strategies of C. odorata, and contribute to improving evaluations and predictions of invasive plant dynamics and their ecological effects in tropical coral islands.

Linking main ecological clusters of soil bacterial–fungal networks and nitrogen cycling genes to crop yields under diverse cropping systems in the North China Plain

BackgroundCrop rotation changes crop species and the associated management strategies, significantly influencing soil fertility and soil microbial communities. Interactions among the species in microbial communities are important for soil nutrient cycling. Yet, the contribution of soil microbial interactions to crop yield and soil nitrogen-cycle function under wheat–maize and wheat–soybean rotation conversion remains unclear. An 8-year field experiment was conducted to investigate the impact of simple [8-year wheat–maize rotation (8WM) and 8-year wheat–soybean rotation (8WS)] and diverse cropping systems [4-year wheat–soybean followed by 4-year wheat–maize rotation (4WS4WM) and 4-year wheat–maize followed by 4-year wheat–soybean rotation (4WM4WS)] on crop yield, soil properties, bacterial–fungal co-occurrence networks and nitrogen functional potentials. The abundances of genes with nitrogen fixation (nifH), nitrification (AOB and nxrA) and denitrification (narG, nirK, norB and nosZ) potentials were quantified and bacterial and fungal communities were characterized.Results4WS4WM led to higher succeeding maize yields and lower bacterial–fungal network complexity, nitrogen fixation potentials and denitrifying potentials than 8WM. Meanwhile, 4WM4WS exhibited higher succeeding wheat and soybean yields, network complexity and lower nitrifying potentials than 8WS. The ecological cluster with the most nitrifying and denitrifying bacterial species (Module#5) and that with the least species (Module#3) dominated the potentials of nitrogen fixation, nitrification and denitrification and succeeding maize yields in 4WS4WM and 8WM. Module#4 with the highest abundances of nitrifying bacteria (Nitrosomonadaceae) and Module#2 with the most species dominated the nitrifying potentials and succeeding wheat and soybean yields in 4WM4WS and 8WS. Soil water content, organic carbon, dissolved organic carbon, NO3− and pH were key drivers influencing Module#3 and Module#5, while only NH4+ significantly affected Module#2 and Module#4.ConclusionsThese findings demonstrate the importance of ecological clusters within soil microbial network in regulating crop yield and soil nitrogen cycling, and identify specific ecological clusters dominating nitrogen functional potentials in wheat–maize and wheat–soybean rotations, offering science-based recommendations for sustainable crop rotation practices.Graphical