An region of ecological hazard (EHR) is an area where, as a result of intensive human economic activity, degradation of components of the natural environment has taken place, leading to the deterioration of the ecological balance. EHR management is a globalised ever-increasing challenge. To eliminate the hazardous effect of these pollutants, research has been accelerated worldwide. The current study analyzed the specific biomarkers of the lipid and protein oxidation, total antioxidative status, activities of antioxidant enzymes (superoxide dismutase, catalase, glutathione reductase and peroxidase), lysosomal enzymes (alanyl aminopeptidase, leucyl aminopeptidase, acid phosphatase), and biomarkers of aerobic and anaerobic metabolic pathways (activities of alanine and aspartate aminotransferases, succinate dehydrogenase, lactate dehydrogenase, lactate and pyruvate levels) in skeletal muscle tissue of wild great tit nestlings in environments with different levels of anthropogenic pressure such as sodium industry and agriculture in the central part of northern Poland (Inowrocław EHR). Control samples were collected from Tuchola Forest and Borkowo village, where no direct sources of contamination were found. The relevance of the study was to assess the changes in lysosomal functioning caused by pollution-induced oxidative stress that may indicate multidirectional adaptative mechanisms of metabolic processes occurring in the wild birds to compensate for the negative effects of contamination. It was shown that the initiation of oxidative stress caused by anthropogenic pollution shifted the balance of the normal functioning of lysosomal enzymes towards their increased activity. A general tendency towards an increase in the intensity of lipid peroxidation processes with an increasing level of oxidatively modified proteins (aldehydic and ketonic derivatives) and a simultaneous reduction in the TAS was observed in the muscle tissue of great tits living in the anthropogenically modified areas. The intensity of lipid peroxidation and protein damage caused changes and reorganization of the energy-related metabolic pathways in the muscle tissue of wild great tits living in the sodium industry and agricultural areas of the EHR.