Altered Forest Ecosystems Research Articles

Assessing the Impacts of Nature-Based Solutions on Ecosystem Services: A Water-Energy-Food-Ecosystems Nexus Approach in the Nima River Sub-Basin (Colombia)

Forest ecosystem services are critical for maintaining ecological balance and supporting human well-being from different perspectives. However, rapid land use changes driven by agricultural expansion, urbanization, and industrial activities have significantly altered forest ecosystems, degrading the services they provide. We here conduct an ecosystem service assessment through biophysical and economic estimates for a multipurpose Andean water sub-basin in western Colombia. We compare a business as usual (BAU) with a forest nature-based solution (NbS) scenario focused on forest landscape restoration. The research employed participatory methods for the NbS selection and economic valuation techniques to evaluate water flow regulation, water provisioning, water purification, and food provisioning services. Results show that the NbS scenario yielded a net positive economic impact across most evaluated ecosystem services, with notable trade-offs. Specifically, the NbS scenario increased water retention by 2.9% compared to BAU. Water flow regulation demonstrated the most substantial economic benefit, increasing by EUR 11.39 million/year in the NbS scenario. On the other hand, the food provisioning service presented a reduction of EUR 3.2 million/year in the NbS scenario. These findings highlight the potential of forest-based NbS to address the Water–Energy–Food–Ecosystem (WEFE) nexus challenges. The study’s outcomes provide valuable insights for policymakers and practitioners, supporting the development of Payment for Ecosystem Services schemes and integrating ecosystem service valuation into land use planning and decision-making processes.

MAMMALS IN AN OIL PALM DOMINATED LANDSCAPE

The Stability of Altered Forest Ecosystems (SAFE) Project has been running since 2011 in the state of Sabah, Malaysian Borneo. Over the past ten years we have conducted 19 studies that have generated data that can be used to compare the ecology of non-flying mammals in forest areas with those in oil palm plantations. This paper summarises information on the diversity, abundance and behaviour of these mammals in oil palm dominated landscapes. The studies have robustly demonstrated a dramatic decline in diversity of mammals in oil palm plantations compared to logged forests, with approximately 50 per cent of species completely disappearing. A small subset of species otherwise found in tropical forests can survive in, and apparently adapt to, this new habitat to some extent. It is also shown that there is very little movement of native rodents from forests into plantations. Our results highlight the importance of remnant forest patches, even heavily logged patches and riparian buffers in the agricultural landscape, and demonstrate the importance of maintaining the structural complexity of these forest remnants to enhance their conservation value for native mammals. In view of the findings, several management recommendations are made derived from the practical applications of our research.

A protocol for a longitudinal, observational cohort study of infection and exposure to zoonotic and vector-borne diseases across a land-use gradient in Sabah, Malaysian Borneo: a socio-ecological systems approach

Introduction. Landscape changes disrupt environmental, social and biological systems, altering pathogen spillover and transmission risks. This study aims to quantify the impact of specific land management practices on spillover and transmission rates of zoonotic and vector-borne diseases within Malaysian Borneo. This protocol describes a cohort study with integrated ecological sampling to assess how deforestation and agricultural practices impact pathogen flow from wildlife and vector populations to human infection and detection by health facilities. This will focus on malaria, dengue and emerging arboviruses (Chikungunya and Zika), vector-borne diseases with varying contributions of simian reservoirs within this setting. Methods. A prospective longitudinal observational cohort study will be established in communities residing or working within the vicinity of the Stability of Altered Forest Ecosystems (SAFE) Project, a landscape gradient within Malaysian Borneo encompassing different plantation and forest types. The primary outcome of this study will be transmission intensity of selected zoonotic and vector-borne diseases, as quantified by changes in pathogen-specific antibody levels. Exposure will be measured using paired population-based serological surveys conducted at the beginning and end of the two-year cohort study. Secondary outcomes will include the distribution and infection rates of Aedes and Anopheles mosquito vectors, human risk behaviours and clinical cases reported to health facilities. Longitudinal data on human behaviour, contact with wildlife and GPS tracking of mobility patterns will be collected throughout the study period. This will be integrated with entomological surveillance to monitor densities and pathogen infection rates of Aedes and Anopheles mosquitoes relative to land cover. Within surrounding health clinics, continuous health facility surveillance will be used to monitor reported infections and febrile illnesses. Models will be developed to assess spillover and transmission rates relative to specific land management practices and evaluate abilities of surveillance systems to capture these risks.

A protocol for a longitudinal, observational cohort study of infection and exposure to zoonotic and vector-borne diseases across a land-use gradient in Sabah, Malaysian Borneo: a socio-ecological systems approach.

Introduction. Landscape changes disrupt environmental, social and biological systems, altering pathogen spillover and transmission risks. This study aims to quantify the impact of specific land management practices on spillover and transmission rates of zoonotic and vector-borne diseases within Malaysian Borneo. This protocol describes a cohort study with integrated ecological sampling to assess how deforestation and agricultural practices impact pathogen flow from wildlife and vector populations to human infection and detection by health facilities. This will focus on malaria, dengue and emerging arboviruses (Chikungunya and Zika), vector-borne diseases with varying contributions of simian reservoirs within this setting. Methods. A prospective longitudinal observational cohort study will be established in communities residing or working within the vicinity of the Stability of Altered Forest Ecosystems (SAFE) Project, a landscape gradient within Malaysian Borneo encompassing different plantation and forest types. The primary outcome of this study will be transmission intensity of selected zoonotic and vector-borne diseases, as quantified by changes in pathogen-specific antibody levels. Exposure will be measured using paired population-based serological surveys conducted at the beginning and end of the two-year cohort study. Secondary outcomes will include the distribution and infection rates of Aedes and Anopheles mosquito vectors, human risk behaviours and clinical cases reported to health facilities. Longitudinal data on human behaviour, contact with wildlife and GPS tracking of mobility patterns will be collected throughout the study period. This will be integrated with entomological surveillance to monitor densities and pathogen infection rates of Aedes and Anopheles mosquitoes relative to land cover. Within surrounding health clinics, continuous health facility surveillance will be used to monitor reported infections and febrile illnesses. Models will be developed to assess spillover and transmission rates relative to specific land management practices and evaluate abilities of surveillance systems to capture these risks.

Linking functional traits to multiscale statistics of leaf venation networks.

Leaf venation networks evolved along several functional axes, including resource transport, damage resistance, mechanical strength, and construction cost. Because functions may depend on architectural features at different scales, network architecture may vary across spatial scales to satisfy functional tradeoffs. We develop a framework for quantifying network architecture with multiscale statistics describing elongation ratios, circularity ratios, vein density, and minimum spanning tree ratios. We quantify vein networks for leaves of 260 southeast Asian tree species in samples of up to 2cm2 , pairing multiscale statistics with traits representing axes of resource transport, damage resistance, mechanical strength, and cost. We show that these multiscale statistics clearly differentiate species' architecture and delineate a phenotype space that shifts at larger scales; functional linkages vary with scale and are weak, with vein density, minimum spanning tree ratio, and circularity ratio linked to mechanical strength (measured by force to punch) and elongation ratio and circularity ratio linked to damage resistance (measured by tannins); and phylogenetic conservatism of network architecture is low but scale-dependent. This work provides tools to quantify the function and evolution of venation networks. Future studies including primary and secondary veins may uncover additional insights.

MODELING SPECIES DISTRIBUTION OF SHOREA GUISO (BLANCO) BLUME AND PARASHOREA MALAANONAN (BLANCO) MERR IN MOUNT MAKILING FOREST RESERVE USING MAXENT

Abstract. Climate change is regarded as one of the most significant drivers of biodiversity loss and altered forest ecosystems. This study aimed to model the current species distribution of two dipterocarp species in Mount Makiling Forest Reserve as well as the future distribution under different climate emission scenarios and global climate models. A machine-learning algorithm based on the principle of maximum entropy (Maxent) was used to generate the potential distributions of two dipterocarp species – Shorea guiso and Parashorea malaanonan. The species occurrence records of these species and sets of bioclimatic and physical variables were used in Maxent to predict the current and future distribution of these dipterocarp species. The variables were initially reduced and selected using Principal Component Analysis (PCA). Moreover, two global climate models (GCMs) and climate emission scenarios (RCP4.5 and RCP8.5) projected to 2050 and 2070 were utilized in the study. The Maxent models predict that suitable areas for P. malaanonan will decline by 2050 and 2070 under RCP4.5 and RCP 8.5. On the other hand, S. guiso was found to benefit from future climate with increasing suitable areas. The findings of this study will provide initial understanding on how climate change affects the distribution of threatened species such as dipterocarps. It can also be used to aid decision-making process to better conserve the potential habitat of these species in current and future climate scenarios.

Tropical logging and deforestation impacts multiple scales of weevil beta-diversity

Half of Borneo's forest has been logged and oil palm plantations have replaced millions of hectares of forest since the 1970's. While this extensive land-use change has been shown to reduce species richness across landscapes, there is limited current knowledge on how deforestation affects the spatial arrangement of ecological communities. Identifying responses of beta-diversity to land-use change may reveal processes which could mitigate total biodiversity loss. We sampled weevils (superfamily: Curculionoidea) at multiple spatial scales across a land-use gradient at the Stability of Altered Forest Ecosystems (SAFE) Project in Sabah, Malaysia, in 2011–2012. We caught 160 taxa of weevil and calculated the response of alpha-diversity (1-ha scale) and beta-diversity (10-, 100-, and 1000-ha scales) to disturbance. Alpha-diversity of weevils was greatest in unlogged forest but landscape-level beta-diversity (100- and 1000-ha scale) was maintained across logged and unlogged due to high rates of spatial turnover. Turnover at smallest spatial scales (10-ha) in unlogged forest was highest in rough, flat terrain but smooth, sloping terrain had highest turnover in logged forest. Logging of flat terrain at small spatial scales has potential to decrease beta-diversity at greater scales. Beta-diversity at landscape-level in oil palm plantation remained high but was propagated by abundance shifts of few species instead of spatial turnover of many species. High temporal beta-diversity in unlogged forest was evident through periodic fluxes in abundance of many weevil species. We conclude that unlogged forest is irreplaceable for high beetle biodiversity but increased spatial turnover in some terrains may help conserve beetle communities in heavily-degraded landscapes.

Evidence for High Variability in Temporal Features of the Male Coda in Müller’s Bornean Gibbons (Hylobates muelleri)

Most pair-living primate species engage in duets, wherein males and females produce coordinated vocalizations. Previous analyses of male gibbon contributions to the duet have shown that calls are individually distinct. Here we investigate variation in the temporal and spectral parameters in the male contribution to the duet, also known as the coda, of wild, nonhabituated male Muller’s Bornean gibbons (Hylobates muelleri), recorded both opportunistically and as a response to playbacks at the Stability of Altered Forest Ecosystems site in Sabah, Malaysia. We used linear discriminant function analysis to estimate the intra- and interindividual variation in 13 spectral and temporal parameters of the vocalizations (N = 337) of 31 male gibbons. To further understand how call features vary within and between individuals we used a multivariate, variance components model to investigate how variance in features was partitioned at these two levels. We could identify males with a 66% accuracy using leave-one-out cross-validation, a relatively low score compared to female Muller’s Bornean gibbons and males of other species. We found that for some features (such as maximum frequency of the notes) most of the variance occurred between males, but for others (specifically total duration of the call and duration of rest in between notes) most of the variance occurred within a single male. Overall, male Muller’s Bornean gibbon coda vocalizations showed greater variability relative to their female counterparts, raising questions about potential differences in the function of the male and female contributions to the duet in Muller’s Bornean gibbons and the gibbon taxon as a whole.

Strong but taxon‐specific responses of termites and wood‐nesting ants to forest regeneration in Borneo

AbstractLand use change is accelerating globally at the expense of biodiversity and ecosystem functioning. Invertebrates are numerically dominant and functionally important in old growth tropical rain forests but highly susceptible to the adverse effects of forest degradation and fragmentation. Ants (Formicidae) and termites (Blattodea: Termitoidae) perform crucial ecosystem services. Here, the potential effects of anthropogenic disturbance on ant and termite communities in dead wood are investigated. Community composition, generic richness, and occupancy rates of ants and termites were compared among two old growth sites (Danum Valley and Maliau Basin) and one twice‐logged site (the Stability of Altered Forest Ecosystems’ (SAFE) Project), in Sabah, Malaysian Borneo. Occupancy was measured as the number of ant or termite encounters (1) per deadwood items, and (2) per deadwood volume, and acts as surrogates for relative abundance (or generic richness). Termites had a lower wood‐occupancy per volume in logged forest. In contrast, there were more ant encounters, and more ant genera, in logged sites and there was a community shift (especially, there were more Crematogaster encounters). The disruption of soil and canopy structure in logged forest may reduce both termite and fungal decay rates, inducing increased deadwood residence times and therefore favoring ants that nest in dead wood. There is an anthropogenic‐induced shift of dead wood in ants and termites in response to disturbance in tropical rain forests and the nature of that shift is taxon‐specific.

Investigating Individual Vocal Signatures and Small-Scale Patterns of Geographic Variation in Female Bornean Gibbon (Hylobates muelleri) Great Calls

Quantifying patterns of variation in primate vocalizations has important implications for understanding the evolutionary processes that lead to variation in phenotypic traits more broadly. Here, we investigated individuality and patterns of geographic variation across a small geographic scale (ca. 10 km) in female Bornean gibbon (Hylobates muelleri) great calls. We analyzed calls recorded from wild, unhabituated gibbon groups at the Stability of Altered Forest Ecosystems site in Sabah, Malaysia. We estimated 23 acoustic features in 376 great calls from 33 different females. We used linear discriminant function analysis to investigate intra- and interindividual variation in great calls. To examine small-scale patterns of geographic variation great calls we investigated measures of acoustic dissimilarity as a function of distance. We found that temporal features (such as the duration of the notes and the duration of rest between notes) contributed substantially to individuality. We were able to identify females based on their calls with 95.7% accuracy using leave-one-out cross-validation. We found no discernible patterns of geographic variation at our site; females with neighboring territories were just as likely to have similar calls as females with more distant territories. It is possible that we did not sample across a large enough geographic range, or that substantial interindividual variation effectively swamped across-site patterns of variation. Our findings add to the growing body of evidence for individual vocal signatures in primates and mammals, but further research is needed to understand the evolutionary mechanisms that contribute to individuality in gibbon calls.

Mapping the structure of Borneo's tropical forests across a degradation gradient

Abstract South East Asia has the highest rate of lowland forest loss of any tropical region, with logging and deforestation for conversion to plantation agriculture being flagged as the most urgent threats. Detecting and mapping logging impacts on forest structure is a primary conservation concern, as these impacts feed through to changes in biodiversity and ecosystem functions. Here, we test whether high-spatial resolution satellite remote sensing can be used to map the responses of aboveground live tree biomass (AGB), canopy leaf area index (LAI) and fractional vegetation cover (FCover) to selective logging and deforestation in Malaysian Borneo. We measured these attributes in permanent vegetation plots in rainforest and oil palm plantations across the degradation landscape of the Stability of Altered Forest Ecosystems project. We found significant mathematical relationships between field-measured structure and satellite-derived spectral and texture information, explaining up to 62% of variation in biophysical structure across forest and oil palm plots. These relationships held at different aggregation levels from plots to forest disturbance types and oil palms allowing us to map aboveground biomass and canopy structure across the degradation landscape. The maps reveal considerable spatial variation in the impacts of previous logging, a pattern that was less clear when considering field data alone. Up-scaled maps revealed a pronounced decline in aboveground live tree biomass with increasing disturbance, impacts which are also clearly visible in the field data even a decade after logging. Field data demonstrate a rapid recovery in forest canopy structure with the canopy recovering to pre-disturbance levels a decade after logging. Yet, up-scaled maps show that both LAI and FCover are still reduced in logged compared to primary forest stands and markedly lower in oil palm stands. While uncertainties remain, these maps can now be utilised to identify conservation win–wins, especially when combining them with ongoing biodiversity surveys and measurements of carbon sequestration, hydrological cycles and microclimate.

Deadwood biomass: an underestimated carbon stock in degraded tropical forests?

Despite a large increase in the area of selectively logged tropical forest worldwide, the carbon stored in deadwood across a tropical forest degradation gradient at the landscape scale remains poorly documented. Many carbon stock studies have either focused exclusively on live standing biomass or have been carried out in primary forests that are unaffected by logging, despite the fact that coarse woody debris (deadwood with ≥10 cm diameter) can contain significant portions of a forest’s carbon stock. We used a field-based assessment to quantify how the relative contribution of deadwood to total above-ground carbon stock changes across a disturbance gradient, from unlogged old-growth forest to severely degraded twice-logged forest, to oil palm plantation. We measured in 193 vegetation plots (25 × 25 m), equating to a survey area of >12 ha of tropical humid forest located within the Stability of Altered Forest Ecosystems Project area, in Sabah, Malaysia. Our results indicate that significant amounts of carbon are stored in deadwood across forest stands. Live tree carbon storage decreased exponentially with increasing forest degradation 7–10 years after logging while deadwood accounted for >50% of above-ground carbon stocks in salvage-logged forest stands, more than twice the proportion commonly assumed in the literature. This carbon will be released as decomposition proceeds. Given the high rates of deforestation and degradation presently occurring in Southeast Asia, our findings have important implications for the calculation of current carbon stocks and sources as a result of human-modification of tropical forests. Assuming similar patterns are prevalent throughout the tropics, our data may indicate a significant global challenge to calculating global carbon fluxes, as selectively-logged forests now represent more than one third of all standing tropical humid forests worldwide.

Marten space use and habitat selection in managed coniferous boreal forests of eastern Canada

AbstractEffects of habitat loss and fragmentation on the behavior of individual organisms may have direct consequences on population viability in altered forest ecosystems. The American marten (Martes americana) is a forest specialist considered as one of the most sensitive species to human‐induced disturbances. As some studies have shown that martens cannot tolerate >30–40% clear‐cuts within their home range, we investigated marten space use (home range size and overlap) and habitat selection in landscapes fragmented by 2 different patterns of timber harvesting in the black spruce boreal forest: dispersed‐cut landscapes (10–80 ha cut‐blocks) and clustered‐cut landscapes (50–200 ha cut‐blocks). We installed radio‐collars on female martens and determined 20 winter home ranges (100% minimum convex polygons and 60–90% kernels) in dispersed‐cut (n = 8) and clustered‐cut (n = 12) landscapes. Home range size was not related to the proportion of clear‐cuts (i.e., habitat loss), but rather to the proportion of mixedwood stands 70–120 years old. However, female body condition was correlated to habitat condition inside their home ranges (i.e., amount of residual forest and recent clear‐cuts). At the home range scale, we determined that mixedwood forests were also among the most used forest stands and the least used were recent clear‐cuts and forested bogs, using resource selection functions. At the landscape scale, home ranges included more mixedwood forests than random polygons and marten high activity zones were composed of more residual forest and less human‐induced disturbances (clear‐cuts, edges, and roads). These results suggest that mixedwood forests, which occupy approximately 10% of the study area, play a critical role for martens in this conifer‐dominated boreal landscape. We recommend permanent retention or special management considerations for these isolated stands, as harvesting mixedwood often leads to forest composition conversion that would reduce the availability of this highly used habitat. © The Wildlife Society, 2013

Impact of landscape alteration and invasions on pollinators: a meta‐analysis

Summary1. Alterations in land use and biological invasions are two major components of global change that threaten biodiversity. There is high concern about their impact on pollinators and the pollination services they provide. However, the growing literature shows different, even contradictory results.2. We present a global meta‐analysis of 58 publications reporting 143 studies (37 on landscape alteration and 21 on biological invasions) to assess the extent to which these components affect pollinators, and whether taxonomic and ecosystem‐type differences in pollinator responses occur. We also quantified which component of landscape alteration had the largest effect on pollinators and assessed whether animal invasions differ from plant invasions in their effect on native pollinators.3. Habitat alteration and invasions affected pollinators to the same magnitude by decreasing visitation rates. Vertebrates in altered landscapes and insects (excluding bees) in invaded areas were the most affected pollinator taxa.4. Pollinator abundance was more reduced in altered forest ecosystems than in altered grasslands; while the reverse pattern was found for pollinator richness. However, the response of pollinators to invasions was independent of ecosystem type.5. Disturbance of the surrounding matrix was more important in decreasing pollinator visitation rates than fragment size.6. Invasive animals seemed to have a more consistent negative effect on visitation rates than invasive plants.7. Synthesis. Our study highlights that different components of global change have similar negative outcomes on pollination patterns, but that responses of pollinators vary among taxa and ecosystem types, as well as the attributes of landscape alteration considered and whether the invader is an animal or a plant.

A large-scale forest fragmentation experiment: the Stability of Altered Forest Ecosystems Project

Opportunities to conduct large-scale field experiments are rare, but provide a unique opportunity to reveal the complex processes that operate within natural ecosystems. Here, we review the design of existing, large-scale forest fragmentation experiments. Based on this review, we develop a design for the Stability of Altered Forest Ecosystems (SAFE) Project, a new forest fragmentation experiment to be located in the lowland tropical forests of Borneo (Sabah, Malaysia). The SAFE Project represents an advance on existing experiments in that it: (i) allows discrimination of the effects of landscape-level forest cover from patch-level processes; (ii) is designed to facilitate the unification of a wide range of data types on ecological patterns and processes that operate over a wide range of spatial scales; (iii) has greater replication than existing experiments; (iv) incorporates an experimental manipulation of riparian corridors; and (v) embeds the experimentally fragmented landscape within a wider gradient of land-use intensity than do existing projects. The SAFE Project represents an opportunity for ecologists across disciplines to participate in a large initiative designed to generate a broad understanding of the ecological impacts of tropical forest modification.

Fire history data as reference information in ecological restoration

Fire plays a fundamental role in the ecology of Araucaria-Nothofagus forests. This paper highlights the utility of dendrochronological techniques in providing the historical reference conditions to guide ecological restoration. In the Araucarian region human activity has dramatically changed the fire frequency in the Araucaria-Nothofagus forest ecosystems. Although further critical evaluation is required, our preliminary data show that, compared with the Native American period (pre-1883), there was widespread burning of forests associated with the subsequent Euro-Chilean settlement phase. Vast areas of subalpine forest were deliberately burned to increase pasture for cattle ranching. This process is documented by a major increase in the frequency of fires in the forested Araucaria-Nothofagus landscape during the 20th century. Prior to the 1880s the fire regime was characterized by infrequent catastrophic fires with long intervening periods of stability. The immediate reduction of human-induced fire is necessary to move these altered forest ecosystems towards the range of natural structural conditions and reestablish the historical variability of this ecological process. A better understanding of the fire ecology seems crucial in developing strategies for the restoration and management of these fire-dependent forest ecosystems.