A protein encephalitogen, isolated in a homogeneous state from bovine spinal cord, was found to have unusual properties. It was highly basic, containing 38 moles/ mole of basic amino acids (arginine, lysine, histidine) and only 7 moles/mole of acidic amino acids (glutamic and aspartic acid); the calculated isoionic point exceeded 12. Only one tryptophan (determined by three independent methods) and two methionine residues were present; no carbohydrate or lipid was associated with the isolated protein. Although similar to certain histone fractions, it differed from these proteins in its much higher content of histidine, glycine, and serine, and its lower content of alanine. The N-terminal position is blocked. The molecular weight determined by sedimentation equilibrium techniques was 16,400 daltons; by sedimentation-viscosity, 16,200; and by UV absorption studies based on the tyrosine-tryptophan content, 16,200. Estimates of molecular weight based on the amino acid analysis gave values of 15,500–18,200 daltons. An intrinsic viscosity of 9.27 ml/g and viscosity increment of 12.9 were found. From these data an axial ratio (a/b) of approximately 10:1 (assuming no hydration and a prolate ellipsoid) was calculated, revealing that the molecule is highly unfolded and approximates a rod-like shape. This property accounts for the unexpected behavior of this basic protein on gel nitration which has led to erroneously high molecular weight values. A small degree of aggregation was observed as indicated by the high molecular weight estimate of 22,300 found near the cell bottom using a long-column sedimentation equilibrium technique. No evidence of aggregation was observed at pH 2.6, 7.0, or 9.5 during sedimentation velocity studies. An S 0 20, w value of 1.72S was found at pH 2.6, ionic strength 0.25. Considerable variation of the S 20, w was found with protein concentration, but not with pH. The highly extended conformation of the Al molecule, found from viscosity studies, is compatible with its resistance to denaturation; no loss in encephalitogenic activity was found following heating at 100 ° for 1 hr, treatment with 8 m urea for 8 hr, or incubation at pH 10.0 for 8 hr. Moreover, these procedures do not diminish interaction with antibody measured by the Ouchterlony and passive hemagglutination inhibition tests. Polyacrylamide gel electrophoresis also revealed no drastic changes in conformation arising from these procedures. It was concluded from these data that hydrophobic and hydrogen bonding play a minor role in the overall conformation of the A1 protein molecule. This property is of interest in considering the role of this protein as a membrane component.
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