Alkyne Cycloaddition Research Articles

Nitrogen-rich, click-based porous organic polymers featuring flexible amine cores for catalytic CO2/epoxide cycloaddition

CO2 utilization to produce value-added products such as cyclic carbonates, especially under mild catalytic conditions, is a promising strategy to reduce CO2 emissions to the environment. In this work, nitrogen-rich, click-based porous polymers (CPPs) were prepared from coupling of tripropargylamine and rigid diazido aromatic substrates, featuring 1,4-phenylene (TB), 1,5-naphthalene (TN), and 4,4′-benzanilide (TBA) linkers, in moderate to good yields (48–83%) using Cu-catalyzed azide–alkyne cycloaddition (CuAAC; TB-C, TN-C, TBA-C) and Huisgen cycloaddition (TB-H, TN-H, and TBA-H). The presence of the chelate tris(triazolylmethyl)amine ligands within the polymer's structure led to strong copper binding and consequently high copper loading ability of the CPPs. In addition, high contents of Lewis basic N donors (21–27 wt% N) of TB-C, TN-C, TBA-C are most likely attributed to strong interactions between CO2 and CPPs and exceptionally high CO2 selectivity over N2 at 273 K, based on gas sorption studies. The catalyst system TB-C/TBAB (TBAB = tetrabutylammonium bromide) promoted complete conversion of epoxides to cyclic carbonates under an atmospheric CO2 pressure, after 24 h or 48 h at 100 °C, with the exception of the epichlorohydrin substrate where 42% selectivity was observed by 1H NMR spectroscopy. The TB-C/TBAB catalyst system could be reused for five catalytic runs without a loss in catalytic activities and any pre-activation processes.

Organocatalytic asymmetric [2 + 2] cycloaddition of alkynes with quinones

Organocatalytic asymmetric [2 + 2] cycloaddition of alkynes with quinones

Orthogonal synthesis of a versatile building block for dual functionalization of targeting vectors

Abstract Dual functionalization of targeting vectors, such as peptides and antibodies, is still synthetically challenging despite the increasing demand for such molecules serving multiple purposes (i.e., optical and nuclear imaging). Our strategy was to synthesize a versatile building block via the orthogonal incorporation of chemical entities (e.g., radionuclide chelator, fluorescent dye, cytotoxic drugs, click handle, and albumin binder) in order to prepare various dual functionalized biovectors. The functional groups were introduced on the building block using straightforward chemical reactions. Thus, an azidolysine and a biogenic lysine were installed into the building block to allow the coupling of the second functional group and the regioselective conjugation to the biovector via the strain-promoted azide–alkyne cycloaddition, while the first functional group was inserted during the solid-phase peptide synthesis. To extend the applicability of the building block to large biomolecules, such as antibodies, a DBCO-maleimide linker was clicked to the azidolysine to present a maleimide group that could react with the exposed sulfhydryl groups of the cysteine residues. To exemplify the possibilities offered by the building block, we synthesized two dual-functionalized compounds containing a 2,2′,2″′,2‴-(1,4,7,10-tetraazacyclododecane-1,4,7,10-tetrayl) tetraacetic acid chelator and an albumin binder (4a) to extend the blood half-life of radiolabeled biovectors or a click handle (4b) to enable the late-stage click reaction; 4a and 4b were conjugated to a model cyclic peptide bearing a short thiolated linker at the N-terminal position, in a single step via the thiol–maleimide Michael addition. Both dual-functionalized peptides, 9a and 9b, were obtained rapidly in high chemical purity (>95%) and labeled with [111In]InCl3. Both radiopeptides showed good stability in mouse serum and PBS buffer.

Assembly drives regioselective azide-alkyne cycloaddition reaction

Azide-alkyne cycloaddition reaction is a very common organic reaction to synthesize nitrogen-containing heterocycles. Once catalyzed by Cu(I) or Ru(II), it turns out to be a click reaction and thus is widely applied in chemical biology for labeling. However, besides their poor regioselectivity towards this reaction, these metal ions are not biologically friendly. Hence, it is an urgent need to develop a metal-free azide–alkyne cycloaddition reaction for biomedical applications. In this work, we found that, in the absence of metal ions, supramolecular self-assembly in an aqueous solution could realize this reaction with excellent regioselectivity. Nap-Phe-Phe-Lys(azido)-OH firstly self-assembled into nanofibers. Then, Nap-Phe-Phe-Gly(alkynyl)-OH at equivalent concentration approached to react with the assembly to yield the cycloaddition product Nap-Phe-Phe-Lys(triazole)-Gly-Phe-Phe-Nap to form nanoribbons. Due to space confinement effect, the product was obtained with excellent regioselectivity. Employing the excellent properties of supramolecular self-assembly, we are applying this strategy to realize more reactions without metal ion catalysis.

Synthesis and characterization a new polyoxomolybdate C34H114Fe2Mo12N18Na2O66 and study of its catalytic activity in the production of 1,2,3-triazoles

A new polyoxomolybdate, [(C6H12N4-CH3)2Na2(H2O)8](C6H12N4-CH3)2[(H0.5)N(CH2O)3FeMo6O18.5(OH)2.5]2·10H2O (1), was synthesized. The structure of the synthesized polyoxomolybdate was investigated by single-crystal X-ray diffraction analysis and several other identification techniques such as FTIR and EDX analysis. Each unit cell of 1 contains one cation [(C6H12N4-CH3)2Na2(H2O)8]4+ and two hexamethylenetetramine cations (C6H12N4-CH3)+, and two polyanions [(H0.5)N(CH2O)3FeMo6O18.5(OH)2.5]3– with ten water molecules in the crystal lattice. In the polyanion, molybdenum ions are bonded to two terminal oxygen atoms and two μ2- (Mo-Mo) and μ3- (Mo-Fe-Mo) bridging oxygen atoms. Iron in the center of the polyanion 1 is also surrounded by three deprotonated oxygens of trimethanolamine ligand and three μ3- (Mo-Fe-Mo) bridging oxygen atoms. This new polyoxomolybdate was used as an efficient catalyst in the azide–alkyne cycloaddition reaction to produce various 1,2,3-triazoles with high yields. Additional investigations reveal this catalytic system can be refreshed and utilized for up to six successive applications.

Synthesis of new fluorene-containing 9-azabicyclo[4.2.1]nona-2,4,7-trienes [6π+2π]-cycloaddition of alkynes to <i>N</i>-carbofluorenylmethoxyazepine

Catalytic [6π+2π]-cycloaddition of terminal alkynes to N -carbofluorenylmethoxyazepine under the action of a three-component catalytic system Co(acac)2(dppe)/Zn/ZnI2 was performed for the first time to obtain previously undescribed and promising 9-azabicyclo[4.2.1]nona-2,4,7-trienes (in 79-92% yields) containing a fluorene substituent.

Employing Click Chemistry to Expand the Scope of the Metal‐Free Donor‐Acceptor‐Type Photocatalyst 4CzIPN

AbstractThe design of a versatile alkyne‐bearing derivative of the donor‐acceptor fluorophore 2,4,5,6‐tetrakis(9H‐carbazol‐9‐yl) isophthalonitrile (4CzIPN) suitable for further targeted modifications by copper‐catalysed Azide Alkyne Cycloaddition (CuAAC) is reported. The newly synthesised photoredox catalyst notably exhibits analogously unique photoelectronic and steric features as the well‐established carbazolyl dicyanobenzene motif and performs equally in a C−C‐Coupling model reaction. Furthermore, the variability of this donor‐acceptor system was demonstrated by the generation of a library of fourteen photoredox catalysts with electron‐withdrawing and ‐donating groups as well as residues with high steric demands in one simple and selective CuAAC reaction. The modified catalysts feature a broad scope of reducing and oxidising powers in their excited states (span of reducing powers over more than 1 V) and were also successfully applied in the photoredox and nickel‐catalysed decarboxylative cross coupling model reaction. This work represents a method to overcome the limitations in the flexibility of metal‐free donor‐acceptor fluorophores required for the targeted application in organic synthesis and paves the way for the design of customised catalysts with multiple functionalities.

Copper(I)-Catalyzed Kinugasa Reactions in an Undergraduate Organic Chemistry Laboratory

A β-lactam, the core structure unit of clinically important antibiotics such as penicillin and cephalosporin, is one of the most commonly encountered four-membered heterocycles in organic chemistry and is widely used in medicine and biochemistry. The Kinugasa reaction, a copper(I)-catalyzed cycloaddition of a terminal alkyne with a nitrone, is a straightforward and atom economic approach to 2,3-disubstituted β-lactams. This paper describes a comprehensive chemistry experiment involving the Kinugasa reaction in an advanced undergraduate organic chemistry laboratory course. Undergraduate students perform the Kinugasa reaction on the benchtop and isolate and characterize the β-lactam product. An understanding of this named reaction and the connection of organic chemistry with medicinal chemistry are specially emphasized in the class. Several modern chemistry concepts that are missing from traditional organic courses such as β-lactam chemistry, [3 + 2] cycloaddition, atom economy, and the important role of transition metal catalysis in organic reactions are introduced to students in this course.

Bioorthogonal Metabolic Labeling Experiments to Introduce Undergraduate Students to Interdisciplinarity at the Interface of Chemistry and Biology

Chemists have always designed and deployed cross-disciplinary approaches that interface chemistry with other disciplines to proffer solutions to many human problems. We designed a laboratory experiment that implements chemistry concepts in a biological model to prime undergraduate students to appreciate interdisciplinarity as an approach to solving complex problems in contemporary society. The experiments can also be implemented with graduate students transitioning to chemical biology research. The experiment introduces students to classical and emerging chemistry and molecular biology techniques─mammalian cell culture, bioorthogonal metabolic labeling, azide–alkyne cycloaddition reaction (“click” chemistry), microplate photometry, gel electrophoresis, and far-western blot analysis─that are routinely used in research at the interface of chemistry and biology. The students cultured a Chinese hamster ovary cell line (CHO-K1) and metabolically labeled the cellular sialoglycans with azide groups. Next, they used a click chemistry reaction to bioconjugate a fluorogenic molecule to the labeled sialoglycans, enabling the detection of the glycans using microplate photometry or far-western blot analysis. The experiment created a context for a first-hand demonstration of bioorthogonal chemical reaction, a concept novel to most undergraduates with traditional chemistry (organic, inorganic, physical chemistry, and analytical) background. The experience allows the students to apply and connect organic chemistry, bioanalytical chemistry, and molecular biology concepts while learning techniques such as microplate reading, SDS PAGE, and western blot imaging that are indispensable to the growing fields of drug discovery, chemical toxicology, chemical biology, and molecular biology. This experiment is ideal for preparing and motivating students to pursue future research opportunities at the interface of chemistry and biology.

Computation-based regulation of excitonic effects in donor-acceptor covalent organic frameworks for enhanced photocatalysis

The strong excitonic effects widely exist in polymer-semiconductors and the large exciton binding energy (Eb) seriously limits their photocatalysis. Herein, density functional theory (DFT) calculations are conducted to assess band alignment and charge transfer feature of potential donor-acceptor (D-A) covalent organic frameworks (COFs), using 1,3,5-tris(4-aminophenyl)triazine (TAPT) or 1,3,5-tris(4-aminophenyl)benzene (TAPB) as acceptors and tereph-thaldehydes functionalized diverse groups as donors. Given the discernable D-A interaction strengths in the D-A pairs, their Eb can be systematically regulated with minimum Eb in TAPT-OMe. Guided by these results, the corresponding D-A COFs are synthesized, where TAPT-OMe-COF possesses the best activity in photocatalytic H2 production and the activity trend of other COFs is associated with that of calculated Eb for the D-A pairs. In addition, further alkyne cycloaddition for the imine linkage in the COFs greatly improves the stability and the resulting TAPT-OMe-alkyne-COF with a substantially smaller Eb exhibits ~20 times higher activity than the parent COF.

Formal [2+1] Cycloadditions of a Metallacyclopentadiene Unit with Alkynes: Constructing Tetracyclic Conjugated Frameworks with Bridgehead Metals

Comprehensive SummaryMetallacyclopentadienes play a vital role in transition‐metal mediated and catalyzed cycloaddition reactions of alkynes. Though versatile reactions of metallacyclopentadienes with alkynes have been disclosed, [2+1] cycloadditions of metallacyclopentadienes and alkynes have never been discovered. In present work, we report the formal [2+1] cycloadditions of a metallacyclopentadiene unit with a broad scope of commercial alkynes, providing a facile strategy to construct tetracyclic conjugated compounds. The deuterated experiment indicates a metal vinylidene intermediate has been involved in [2+1] cycloaddition. Moreover, the electrophilic substitution reaction of the tetracyclic conjugated compound with the aid of density functional theory (DFT) calculated Fukui functions is investigated. These tetracyclic conjugated compounds exhibit broad absorption spectra in the whole visible region which could be employed as potential photovoltaic materials.

Triple Action of an Attractive Deep Eutectic Solvent in the Synthesis of Aryl Nitriles and Substituted Triazoles Using a Magnetically Reusable Fe3O4@SiO2@PrNCu Catalyst

AbstractHeterogeneous Cu‐catalyzed cyanation of aryl halides and Click cycloaddition of alkyl halides, sodium azide, and terminal alkynes were optimized to be cost effective and environmentally benign. A green Deep Eutectic Solvent (DES) and Fe3O4@SiO2@PrNCu magnetic catalyst was used. This new DES was designed to acts as both base and reaction promoter, beside its major role as solvent, in the studied Cu‐catalyzed reactions. Additionally, hydrophobic/hydrophilic balance of employed DES, enables easier association of polar or nonpolar reactants in the course of the reactions compared to conventional green but only polar solvent such as water. Therefore, this DES provides better diffusion onto the catalyst‘s surfaces and thus accelerates the catalytic process. Simple experimental procedures with purposeful design and use toward DES accompanied by utilization of green and reusable catalyst could be considered as alternative features in this new protocol compared to existing methods for Cu‐catalyzed reactions.

Synthesis of Dense 1,2,3-Triazole Oligomers Consisting Preferentially of 1,5-Disubstituted Units via Ruthenium(II)-Catalyzed Azide-Alkyne Cycloaddition.

Ruthenium(II)-catalyzed azide-alkyne cycloaddition (RuAAC) polymerization of t-butyl 4-azido-5-hexynoate (tBuAH), i.e., a heterobifunctional monomer carrying azide and alkyne moieties, was investigated in this study. RuAAC of the monofunctional precursors of tBuAH yielded a dimer possessing a 1,5-disubstituted 1,2,3-triazole moiety. 1H NMR data showed that the dimer was a mixture of diastereomers. Polymerization of tBuAH using ruthenium(II) (Ru(II)) catalysts produced oligomers of Mw ≈ (2.7-3.6) × 103 consisting of 1,5-disubstituted 1,2,3-triazole units (1,5-units) as well as 1,4-disubstituted 1,2,3-triazole units (1,4-units). The fractions of 1,5-unit (f1,5) were roughly estimated to be ca. 0.8 by comparison of signals of the methine and triazole protons in 1H NMR spectra, indicating that RuAAC proceeded preferentially and thermal Huisgen cycloaddition (HC) somehow took place during the polymerization. The oligomer samples obtained were also characterized by solubility test, size exclusion chromatography (SEC), ultraviolet-visible (UV-Vis) absorption spectroscopy, and thermogravimetric analysis (TGA). The UV-Vis and TGA data indicated that the oligomer samples contained a substantial amount of Ru(II) catalysts. To the best of our knowledge, this is the first report on dense 1,2,3-triazole oligomers consisting of 1,5-units linked via a carbon atom.

Shape- and Size-Tunable Synthesis of Covalent Organic Cages through Rh-Catalyzed Regioselective [2+2+2] Cycloaddition.

Covalent organic cages have potential applications in molecular inclusion/recognition and porous organic crystals. Bridging arene units with sp3 atoms enables facile construction of rigid isolated internal vacancies, and various prismatic arene cages have been synthesized by kinetically controlled covalent bond formation. However, the synthesis of a tetrahedral one, which requires twice as much bond formation as prismatic ones, has been limited to a thermodynamically controlled dynamic SN Ar reaction, and this reversible covalent bond formation made the resulting cage product chemically unstable. Here we report the Rh-catalyzed high-yielding and highly 1,3,5-selective room temperature [2+2+2] cycloaddition of push-pull alkynes and its application to the synthesis of chemically stable aryl ether cages of various shapes and sizes, including prismatic and tetrahedral forms. These aryl ether cages are highly crystalline and intertwine with each other to form regular packing structures. Some aryl ether cages encapsulated isolated water molecules in their hydrophobic cavity by hydrogen bonding with the multiple ester moieties.

Click Chemistry-Inspired Synthesis and Photophysical Studies of Calix[4]arene-Cored Galactosylated and Mannosylated Glycodendrimers

A prompt and modular copper(I)-catalyzed azide–alkyne cycloaddition ʼclickʼ approach has been exploited for the synthesis of galactose- and mannose-coated calixarene-cored G1 generation glycodendrimers. The developed calixarene glycodendrimers were characterized by using spectral techniques (1H NMR, 13C NMR and IR). In photophysical evaluation, UV and fluorescence spectra of the developed compounds were recorded in CH3CN/H2O.

A Short Review of Research Progress on the Synthesis Approaches of Aza-Dibenzocyclooctyne Derivatives.

Cyclooctyne molecules have found wide applications in the strain-promoted azide-alkyne cycloaddition (SPAAC) reactions, which avoid the biotoxicity caused by the use of Cu(I) catalysts. Among the various cyclooctyne systems, dibenzocyclooctyne (DBCO) series have displayed the highest reaction activity. However, the synthesis processes of such structures are time-consuming, which to some extent limit their large-scale development and application. This review has summarized current synthesis routes of two DBCO molecules, aza-dibenzocyclooctyne (DIBAC) and biarylazacyclooctynone (BARAC).

Synthesis of vancomycin fluorescent probes that retain antimicrobial activity, identify Gram-positive bacteria, and detect Gram-negative outer membrane damage

Antimicrobial resistance is an urgent threat to human health, and new antibacterial drugs are desperately needed, as are research tools to aid in their discovery and development. Vancomycin is a glycopeptide antibiotic that is widely used for the treatment of Gram-positive infections, such as life-threatening systemic diseases caused by methicillin-resistant Staphylococcus aureus (MRSA). Here we demonstrate that modification of vancomycin by introduction of an azide substituent provides a versatile intermediate that can undergo copper-catalysed azide−alkyne cycloaddition (CuAAC) reaction with various alkynes to readily prepare vancomycin fluorescent probes. We describe the facile synthesis of three probes that retain similar antibacterial profiles to the parent vancomycin antibiotic. We demonstrate the versatility of these probes for the detection and visualisation of Gram-positive bacteria by a range of methods, including plate reader quantification, flow cytometry analysis, high-resolution microscopy imaging, and single cell microfluidics analysis. In parallel, we demonstrate their utility in measuring outer-membrane permeabilisation of Gram-negative bacteria. The probes are useful tools that may facilitate detection of infections and development of new antibiotics.

NHC-heterocycle carbene gold catalyst intercalated in Layered Double Hydroxides as reusable hybrid catalyst in acidic medium

NHC-heterocyclic carbene metal complexes are efficient catalysts used for the oxidation, amination, cycloaddition or hydration of alkynes. Immobilization of such complex is a strategy to avoid its decomposition/deactivation and allow its recycling. One limitation of the immobilization of carbene metal complexes is the acidic pH required to perform the catalysis of hydration of alkynes. The support used must be resistant in such conditions. Layered Double Hydroxides (LDH) is a widely used material as catalyst support due to their tunable chemical composition and flexible open structure. However, the LDH phases usually found as catalyst support in the literature are chemically instable under severe conditions. In particular, when operating in extreme acidic pH. This study describes the development of a pH-resistant support by screening of LDH with various composition and formulation in order to obtain a stable material at pH down to 3.0, conditions required for a model reaction, the hydration of propargyl alcohol. Then, the intercalation of a NHC-heterocyclic carbene gold anionic complex (NHC-Au) was optimized and fully characterized. The newly heterogeneous catalysts were evaluated for the targeted hydration catalysis reaction. The selected support, a LiAl2 phase obtained by urea method and dried at 80 °C, allowed to immobilized up to 75% of the gold complex. The intercalated catalyst was finally used for the hydration of several alkynes with yields between 84% and 100% and was recycled up to 12 cycles without any activity loss.

Development of Novel Pt(IV)-Carbohydrate Derivatives as Targeted Anticancer Agents against Osteosarcoma

Despite the enormous importance of cisplatin as a chemotherapeutic agent, its application is impacted by dose-limiting side effects and lack of selectivity for cancer cells. Researchers can overcome these issues by taking advantage of the pro-drug nature of the platinum(IV) oxidation state, and by modifying the coordination sphere of the metal centre with specific vectors whose receptors are overexpressed in tumour cell membranes (e.g., carbohydrates). In this paper we report the synthesis of four novel carbohydrate-modified Pt(IV) pro-drugs, based on the cisplatin scaffold, and their biological activity against osteosarcoma (OS), a malignant tumour which is most common in adolescents and young adults. The carbohydrate-targeting vectors and Pt scaffold are linked using copper-catalysed azide-alkyne cycloaddition (CuAAC) chemistry, which is synonymous with mild and robust reaction conditions. The novel complexes are characterised using multinuclear 1D-2D NMR (1H, 13C and 195Pt), IR, HR-MS, Elem. Analyses, and CV. Cytotoxicity on 2D and 3D and cell morphology studies on OS cell lines, as well as non-cancerous human foetal osteoblasts (hFOBs), are discussed.

Evolutionary Engineering of a Cp*Rh(III) Complex-Linked Artificial Metalloenzyme with a Chimeric β-Barrel Protein Scaffold.

Evolutionary engineering of our previously reported Cp*Rh(III)-linked artificial metalloenzyme was performed based on a DNA recombination strategy to improve its catalytic activity toward C(sp2)-H bond functionalization. Improved scaffold design was achieved with α-helical cap domains of fatty acid binding protein (FABP) embedded within the β-barrel structure of nitrobindin (NB) as a chimeric protein scaffold for the artificial metalloenzyme. After optimization of the amino acid sequence by directed evolution methodology, an engineered variant, designated NBHLH1(Y119A/G149P) with enhanced performance and enhanced stability was obtained. Additional rounds of metalloenzyme evolution provided a Cp*Rh(III)-linked NBHLH1(Y119A/G149P) variant with a >35-fold increase in catalytic efficiency (kcat/KM) for cycloaddition of oxime and alkyne. Kinetic studies and MD simulations revealed that aromatic amino acid residues in the confined active-site form a hydrophobic core which binds to aromatic substrates adjacent to the Cp*Rh(III) complex. The metalloenzyme engineering process based on this DNA recombination strategy will serve as a powerful method for extensive optimization of the active-sites of artificial metalloenzymes.