Alkyl Substitution Research Articles

Mapping Electrophile Chemoselectivity in DalPhos/Nickel N-Arylation Catalysis: The Unusual Influence of Remote Sterics.

We disclose herein our evaluation of competitive (hetero)aryl-X (X: Br>Cl>OTf) reactivity preferences in bisphosphine/Ni-catalyzed C-N cross-coupling catalysis, using furfurylamine as a prototypical nucleophile, and employing DalPhos and DPPF as representative ancillary ligands with established efficacy. Beyond this general (pseudo)halide ranking, other intriguing structure-reactivity trends were noted experimentally, including the unexpected observation that bulky alkyl (e. g., R=tBu) substitution in para-R-aryl-X electrophiles strongly discourages (pseudo)halide reactivity relative to smaller substituents (e. g., nBu, Et, Me), despite being both remote from, and having a similar electronic influence on, the reacting C-X bond; such effects on nickel oxidative addition have not been documented previously and were not observed in our comparator reactions presented herein involving palladium. Density functional theory modeling of such PhPAd-DalPhos/Ni-catalyzed C-N cross-couplings revealed the origins of competitive turnover of C-Br over C-Cl, and possible ways in which bulky para-alkyl substitution might discourage net electrophile uptake/turnover, leading to inversion of halide selectivity.

One‐Pot Synthesis of 2,4,6‐Trialkoxy‐ and Triaryloxybenzoates by Cs2CO3‐Mediated Tandem Dimerization/(3+3) Cyclocondensation of 1,3‐Acetonedicarboxylates

AbstractIn this study, Cs2CO3‐mediated one‐pot tandem dimerization/(3+3) cyclocondensation of 1,3‐acetonedicarboxylates followed by substitution of alkyl or aryl halides was developed to construct functionalized 2,4,6‐trialkoxy‐ and triaryloxybenzoates. In the effective reaction, the core benzene system was formed in a single‐step process under open‐vessel conditions. A plausible mechanism for this reaction is proposed and discussed herein.

One‐Pot Catalytic Cascade for the Depolymerization of the Lignin β‐O‐4 Motif to Non‐phenolic Dealkylated Aromatics

Aromatic monomers obtained by selective depolymerization of the lignin β‐O‐4 motif are typically phenolic and contain (oxygenated) alkyl substitutions. This work reveals the potential of a one‐pot catalytic lignin β‐O‐4 depolymerization cascade strategy that yields a uniform set of methoxylated aromatics without alkyl side‐chains. This cascade consists of selective acceptorless dehydrogenation of the γ‐hydroxy group, subsequent retro‐aldol reaction cleaving the Cα–Cβ bond followed by in situ acceptorless decarbonylation of the formed aldehydes. This three‐step cascade reaction, catalyzed by an iridium(I)‐BINAP complex, resulted in 75% 1,2‐dimethoxybenzene from G‐type lignin dimers alongside syngas (CO:H2 ≈ 1.4:1). Applying this method to a synthetic G‐type polymer, 11 wt% 1,2‐dimethoxybenzene was obtained. This versatile compound can be easily transformed into 3,4‐dimethoxyphenol, a valuable precursor for pharmaceutical synthesis, through enzymatic catalytic approach. Moreover, the hydrodeoxygenation potential of 1,2‐dimethoxybenzene offers a pathway to produce valuable cyclohexane or benzene derivatives, presenting enticing opportunities for sustainable chemical transformations without the necessity for phenolic mixture upgrading via dealkylation.

One-Pot Catalytic Cascade for the Depolymerization of the Lignin β-O-4 Motif to Non-phenolic Dealkylated Aromatics.

Aromatic monomers obtained by selective depolymerization of the lignin β-O-4 motif are typically phenolic and contain (oxygenated) alkyl substitutions. This work reveals the potential of a one-pot catalytic lignin β-O-4 depolymerization cascade strategy that yields a uniform set of methoxylated aromatics without alkyl side-chains. This cascade consists of selective acceptorless dehydrogenation of the γ-hydroxy group, subsequent retro-aldol reaction cleaving the Cα-Cβ bond followed by in situ acceptorless decarbonylation of the formed aldehydes. This three-step cascade reaction, catalyzed by an iridium(I)-BINAP complex, resulted in 75% 1,2-dimethoxybenzene from G-type lignin dimers alongside syngas (CO:H2 ≈ 1.4:1). Applying this method to a synthetic G-type polymer, 11 wt% 1,2-dimethoxybenzene was obtained. This versatile compound can be easily transformed into 3,4-dimethoxyphenol, a valuable precursor for pharmaceutical synthesis, through enzymatic catalytic approach. Moreover, the hydrodeoxygenation potential of 1,2-dimethoxybenzene offers a pathway to produce valuable cyclohexane or benzene derivatives, presenting enticing opportunities for sustainable chemical transformations without the necessity for phenolic mixture upgrading via dealkylation.

Unveiling Atomic-Scaled Local Chemical Order of High-Entropy Intermetallic Catalyst for Alkyl-Substitution-Dependent Alkyne Semihydrogenation.

High-entropy intermetallic (HEI) nanocrystals, composed of multiple elements with an ordered structure, are of immense interest in heterogeneous catalysis due to their unique geometric and electronic structures and the cocktail effect. Despite tremendous efforts dedicated to regulating the metal composition and structures with advanced synthetic methodologies to improve the performance, the surface structure, and local chemical order of HEI and their correlation with activity at the atomic level remain obscure yet challenging. Herein, by determining the three-dimensional (3D) atomic structure of quinary PdFeCoNiCu (PdM) HEI using atomic-resolution electron tomography, we reveal that the local chemical order of HEI regulates the surface electronic structures, which further mediates the alkyl-substitution-dependent alkyne semihydrogenation. The 3D structures of HEI PdM nanocrystals feature an ordered (intermetallic) core enclosed by a disordered (solid-solution) shell rather than an ordered surface. The lattice mismatch between the core and shell results in apparent near-surface distortion. The chemical order of the intermetallic core increases with annealing temperature, driving the electron redistribution between Pd and M at the surface, but the surface geometrical (chemically disordered) configurations and compositions are essentially unchanged. We investigate the catalytic performance of HEI PdM with different local chemical orders toward semihydrogenation across a broad range of alkynes, finding that the electron density of surface Pd and the hindrance effect of alkyl substitutions on alkynes are two key factors regulating selective semihydrogenation. We anticipate that these findings on surface atomic structure will clarify the controversy regarding the geometric and/or electronic effects of HEI catalysts and inspire future studies on tuning local chemical order and surface engineering toward enhanced catalysts.

Understanding the Role of Ligand Structure on Extraction of Neptunium by N-Pivot Tripodal Diglycolamides in an Ionic Liquid

ABSTRACT The extraction of Np4+ was studied by a series of N-pivot tripodal diglycolamides, with varying substituents (alkyl groups with varying branching and chain length) and varying spacer length, dissolved in an ionic liquid, i.e. [C4mim][Tf2N]. Out of a series of four ligands, L I (propylene spacer) and L II (ethylene spacer) differ only in the spacer length connecting the three diglycolamide units with the tripodal N platform. While L II – L IV have the same spacer length (ethylene spacer), but L II has a hydrogen atom, L III has methyl group, and L IV has isopropyl group as a substituent at the amidic N atom close to the central N atom. A reversal extraction mechanism of Np4+ was observed when the spacer chain length reduced from a propylene group in L I to an ethylene group in L II – L IV . While a cation-exchange mechanism was observed in case of L I , a solvation extraction mechanism was seen for the other three ligands with the extracted species being Np(NO3)2(L)2+ for L I , and [Np(NO3)4·L] for L II – L IV . The extraction efficiencies of Np4+ with L II – L IV were significantly affected by the nature of the alkyl substituents and follow the order: L II > L III > L IV . This trend in the extraction pattern affirms that the alkyl substitution at the amidic N atom creates steric strain in the ligand while complexing with the metal ion.

Efficient separation of photo-generated carriers for in-situ induction of PDI cation radicals to enhance the photocatalytic performance of PDI supramolecules

In order to investigate whether the formation of hydrogen bonds can affect the degradation products of pollutants, a photocatalyst PDI-SE was obtained by end substituting perylene tetracarboxylic dianhydride with serine (SE) in this paper. As a reference, PDI-IS with isopropylamine (IS) terminal alkyl substitution was synthesized simultaneously. Their photocatalytic performance to decompose phenol and tetrabromobisphenol A (TBBPA) were investigated. PDI-SE could degrade 79.3% of phenol or 68.4% of TBBPA within 4 h under visible light. The degradation products of TBBPA were tracked using high-resolution mass spectrometry. The morphology, composition, structure, and optoelectronic properties of two photocatalysts, particularly their transient absorption spectra and fluorescence lifetime were studied. We also conducted theoretical calculations on their binding energy with phenol or TBBPA, distribution and separation of electron and hole of excited state PDI-SE and PDI-IS supramolecules. Due to the formation of hydrogen bonds the binding energy of PDI-SE with phenol or TBBPA is 1.24 eV or 1.99 eV, which is stronger than that of PDI-IS (0.85 eV or 1.66 eV). Although both PDI-SE and PDI-IS can form free radical cations in excited states, the high separation of electrons and holes of PDI-SE leads to a longer lifetime of free radical cations, so caused its excellent photocatalytic activity compared to PDI-IS. This article proposes a new strategy based on molecular design to promote efficient separation of photogenerated electrons and holes, thereby forming stronger oxidizing PDI cationic radicals in situ to enhance the photocatalytic performance of PDI supramolecules.

Investigation of Melphalan interaction as an alkylating agent with nucleotides by using surface enhanced Raman spectroscopy (SERS)

SERS (Surface Enhanced Raman Spectroscopy) is a new Raman spectroscopy which relies on Surface Plasmon Resonance (SPR) of metal nanoparticles. We have applied colloidal silver and gold nanoparticles as amplifier agents to enhance nucleotide Raman signals. It is observed that without these enhancing agents, it is impossible to investigate nucleotide spectrum due to weak Raman signals. Interaction mechanism of Melphalan, an anticancer drug with four nucleotides (Adenine, Cytosine, Guanine, Thymine) was investigated using SERS to detect and identify changes due to alkylating process in Raman spectra. After incubating Melphalan drug with nucleotides for 24 h at 37 °C, some changes occurred in SERS spectrum and interpretation of SERS spectra revealed the influence of the alkyl substitution on peaks and Raman shifts. After incubation of Melphalan with each nucleotide, intensity of relevant SERS signals assigned to Amid III group of Cytosine and Amid I of Thymine decreased significantly, confirming alkylating taking place. In this study, we also investigated the effect of nanoparticles type on nucleotide spectrum. We could not obtain useful information in the cases of guanine nucleotide. The SERS spectrum of Cytosine as an example of nucleotides in aqueous solution compared to solid state and results demonstrated that in solid state better signals were obtained than in liquid state.

Combination of linear solvation energy and linear free-energy relationships to aid the prediction of reaction kinetics: Application to the solvolysis of 5-HMF by alcohol to levulinate

In the context of cellulose valorization, we studied the kinetics of levulinates synthesis via the solvolysis of 5-HMF by alcohol over Amberlite IR-120. The alcohol plays a double role; it is a reactant and acts as the solvent. In the literature, kinetic models were developed for each type of alcohol, but there were no models combining the dual effect of alcohol alkyl group substituent (ROH) as a reactant and solvent. Such global kinetic models can save time and optimize a process by considering the solvent effect. This effect was taken into account via the Kamlet–Abboud–Taft and Taft equations, using Bayesian inference. We studied the kinetics of levulinate production from 5-HMF in a reaction mixture made of alcohol and GVL within a temperature range from 80 to 115 °C. The following alcohols were used: methanol, ethanol, propanol, butanol, pentanol, and hexanol. It was found that the rate of alkyl levulinate production increases faster in alcohol reaction medium compared to water reaction medium, and increases when increasing the alkyl group substitution (rMLMethanol>rELEthanol>rPLPropanol>rBLButanol>rPeLPentanol>rHeLHexanol>rLAWater). Among the global kinetic models developed in this study, the one that neglects the side reaction of humins was found to be the most reliable.

Enhanced molecular planarity for high-performance photodetectors: Effect of backbone conformation via alkyl substitution position control in dithienoquinoxaline-based conjugated polymers

Conjugated polymers (CPs) with donor and acceptor units exhibit a flexible conformation due to the rotation of the single bond of the bridge groups which greatly hinders a precise study of their photodetection properties. Moreover, the modulation mechanism related to complex factors of CPs molecular conformation on photodetection performance is not clear, causing CP-based organic photodiodes (OPDs) to generally suffer from high dark current and low specific detectivity. In this work, we synthesized two novel PBQx-i-4F and PBQx-o-4F CPs by combining fluorinated BDT with DTQx units using i- and o-alkylated side chain-based thiophene linkages, respectively. Quantum simulation and photo-physics study revealed that PBQx-i-4F displayed a dominant trans conformation, a more planar molecule structure, and high utilization efficiency of photoinduced excitons. The OPDs based on PBQx-i-4F exhibited higher on–off ratios by over two orders of magnitude and higher detectivity (Dsh*) by nearly one order of magnitude compared with those based on PBQx-o-4F. PBQx-i-4F with the i-alkyl substitution on the thiophene linkage displayed enhanced planarity, resulting in more ordered packing and larger population of face-on orientation in film, where decreased trap density and trap-assisted recombination led to reduced dark current and improved charge transport. In summary, our work provides an insight into the relationship between the fine-tuning of the molecular conformation, planarity, and packing of CPs and their photodetection properties in OPDs.

Solvent and alkyl substitution effects on charge-transfer mediated triplet state generation in BODIPY dyads: a combined computational and experimental study

Donor–acceptor dyads based on BODIPYs have been recently employed to enhance the formation of triplet excited states with the process of spin–orbit charge transfer intersystem crossing (SOCT-ISC) which does not require introduction of transition metals or other heavy atoms into the molecule. In this work we compare two donor–acceptor dyads based on meso-naphthalenyl BODIPY by combining experimental and computational investigations. The photophysical and electrochemical characterization reveals a significant effect of alkylation of the BODIPY core, disfavoring the SOCT-ISC mechanism for the ethylated BODIPY dyad. This is complemented with a computational investigation carried out to rationalize the influence of ethyl substituents and solvent effects on the electronic structure and efficiency of triplet state population via charge recombination (CR) from the photoinduced electron transfer (PeT) generated charge-transfer (CT) state. Time dependent-density functional theory (TD-DFT) calculations including solvent effects and spin–orbit coupling (SOC) calculations uncover the combined role played by solvent and alkyl substitution on the lateral positions of BODIPY.Graphical abstract

Deracemization of Atropisomeric Biaryls Enabled by Copper Catalysis.

Atropisomeric biaryls have found crucial applications in versatile chiral catalysts as well as in ligands for transition metals. Herein, we have developed an efficient crystallization-induced deracemization (CID) method to access chiral biaryls from their racemates with a chiral ammonium salt under copper catalysis including BINOL, NOBIN, and BINAM derivatives. After being significantly accelerated by its bidentate diamine ligand, the copper catalyst exhibits high efficiency and selectivity in racemizing biaryl skeletons, and the cocrystal complex would be enantioselectively formed together with chiral ammonium salt, which on acid-quenching would directly deliver chiral biaryl without further chromatographic purification. This CID process is easily scalable, and the chiral ammonium salt was nicely recoverable. Ligand effect studies showed that bulky alkyl substitution was an indispensable element to ensure efficient racemization, which probably proceeds via a radical-cation intermediate and further allows axial rotation by forming a delocalized radical.

Characterization of the Ligand Properties of Donor-stabilized Pnictogenyltrielanes.

A general synthesis and the characterization of novel alkyl-substituted NHC-stabilized pnictogenylboranes NHC ⋅ BH2 ER2 (NHC=N-heterocyclic carbene, E=P, As; R2 =Me2 , Ph2 , t BuH, Cy2 , (SiMe3 )2 ) are reported. These compounds were reacted with Ni(CO)4 to the corresponding complexes of the type [(NHC ⋅ BH2 ER2 )Ni(CO)3 ] to determine their donor strength by Tolman Electronic Parameters (TEPs) and their steric demand as ligands compared to classical phosphines, superbasic phosphines and other commonly applied donor systems. The results show that the NHC-stabilized pnictogenyltrielanes can be considered as being highly basic, while their steric influence depends strongly on the organic residues as well as the donor attached to the {BH2 } moiety. Although weaker than commonly used superbasic phosphines, the donor strength of pnictogenyltrielanes in general can be classified as of similar strength as NHCs. The steric and electronic properties can easily be modified by alkyl substitution as evident from the TEP trends.

N-dealkylation of amines during water disinfection – Revealing a new direction in the formation of disinfection by-products

Among numerous disinfection by-products (DBP) forming during aqueous chlorination nitrogen containing species are of special concern due to their toxicological properties. Nevertheless, corresponding reaction products of these natural and anthropogenic compounds are not sufficiently studied so far. An interesting reaction involves dealkylation of the substituted amine moiety. Here we present the results of the comparative study of one-electron oxidation and aqueous chlorination of several aliphatic and aromatic amines. The reaction products were reliably identified with gas chromatography – high resolution mass spectrometry (GC-HRMS), high pressure liquid chromatography – electrospray ionization high resolution mass spectrometry HPLC-ESI/HRMS), and electrochemistry - electrospray ionization high resolution mass spectrometry (EC-ESI/HRMS). Certain similarities dealing with the formation of the corresponding aldehydes and substitution of alkyl groups at the nitrogen atom for hydrogen were shown for the studied processes. The mechanism of the substituted amines’ aqueous chlorination involving one-electron oxidation is proposed and confirmed by the array of the observed reaction products. Alternative reactions taking place in conditions of aqueous chlorination, i.e. aromatic electrophilic substitution, may successfully compete with dealkylation and produce major products.

A rapid and convenient sample treatment method based on the dissolvable polyacrylamide gel for S-acylation proteomics.

Protein S-acylation is an important lipid modification and plays a series of biological functions. As a classic proteomic method for S-acylated proteome analysis, the acyl-biotin exchange and its derivative methods are known to be very labour-intensive and time-consuming all the time, and will result in significant sample loss. Multiple methanol-chloroform precipitations are involved in order to remove the substances that would interfere with enrichment and identification including detergents, the residual reduction and alkylation reagents. Here, we developed a rapid and convenient method for S-acylation proteomics by combining a dissolvable tube gel and the classic ABE method, a Dissolvable Gel based One-Tube sample Treatment method (DGOTT) method. The protein fixation rate, impact of the gel size on analysis performance and feasibility for analyzing complex samples were evaluated. This method enabled the alkylation and chemical substitution reactions to be conducted in a single EP tube, and convenient removal of interferents through gel washing, which could obviously simplify operations and shorten the sample treatment duration. Finally, we identified a total of 1625 potential S-acylated proteins from 800 μg of mouse brain cerebral cortex proteins. We believe that our method could offer potential for high-throughput analysis of protein S-acylation.

A multipurpose mitochondrial NIR probe for imaging ferroptosis and mitophagy.

This paper explores the use of a di-cationic fluorophore for visualizing mitochondria in live cells independent of membrane potential. Through the synthesized di-cationic fluorophore, we investigate the monitoring of viscosity, ferroptosis, stress-induced mitophagy, and lysosomal uptake of damaged mitochondria. The designed fluorophore is based on DQAsomes, cationic vesicles responsible for transporting drugs and DNA to mitochondria. The symmetric fluorophores possess two charge centres separated by an alkyl chain and are distinguished by a pyridinium group for mitochondrial selectivity, the C-12 alkyl substitution for membrane affinity, and an electron donor-π-acceptor fluorescent scaffold for intramolecular charge transfer. The synthesized fluorophores, PP and NP, emit wavelengths exceeding 600 nm, with a significant Stokes shift (130-211 nm), and NP demonstrates near-infrared emission (∼690 nm). Our study underscores the potential of these fluorophores for live-cell imaging, examining physiological responses such as viscosity and ferroptosis, and highlights their utility in investigating mitophagy damage and lysosomal uptake.

The effects of alkyl substitution on the aggregation of π-conjugated dyes: spectroscopic study and modelling.

A family of dithienosilole-based dyes with alternating donor and acceptor conjugated groups, decorated with linear or branched alkyl chains at different positions on the backbone, have been obtained and investigated in different aggregation states. These dyes are characterized by almost panchromatic absorption and by near-IR emission, with good quantum yields in a variety of solvents with different polarity. We demonstrate that the nature and position of the alkyl substituents strongly govern the self-assembly of the dyes, whose packing is also sensitive to external stimuli, such as grinding and water addition. Thanks to computational results and theoretical modelling, we are able to interpret the results based on two possible preferential packings, characterized by distinct spectroscopic behaviour, whose abundance can be tuned according to the nature and position of the alkyl chains, as well as via external stimuli.

Impact of ZnO Decoration on Electronic Properties of Alkyl Substituted Thiophene–Carbazole Copolymer

This study analyzes the impact of zinc oxide (ZnO) decoration on the structure, stability and electronic properties of the alkyl-substituted thiophene-vinyl carbazole (3-MeTH-VCZ) copolymer, employing density functional theory (DFT)-based quantum atomistix toolkit (ATK) software. This analysis shows a negative interaction energy between the ZnO and the pristine 3-MeTH-VCZ, facilitating substantial charge transfer. Furthermore, the composite (3-MeTH-VCZ-ZnO) formed by the decoration of ZnO in the pristine 3-MeTH-VCZ shows improved electronic properties compared to its pristine counterpart. This improvement is evidenced by an approximate 62% reduction in the highest occupied molecular orbital (HOMO)-lowest unoccupied molecular orbital (LUMO) gap, confirmed by shifts observed in the molecular energy spectrum (MES) and density of state (DOS) profiles. The reduction in the HOMO-LUMO gap suggests enhanced physicochemical and electrochemical sensitivity of the synthesized composites to external stimuli, making them promising candidates for sensing and optoelectronic devices.

Synthesis of Long Alkyl and Fluoroalkyl Substituted Siloxane Copolymers for the Water Repellency of Rammed Earth Walls.

Rammed earth in a built environment has vapor diffusion characteristics and humidity control abilities, each of which is respectively attributed to the porous structures and the hydrophilic properties. Indeed, these structures and properties allow for the easy absorbance of water particles, hence affecting the durability of a rammed earth wall. This paper presents the water-repellency method for rammed earth walls, which utilizes siloxane copolymers containing fluorine. The water-repellent properties are investigated by measuring the contact angle, water absorption rate, and compressive strength after spray-coating with the synthesized siloxane copolymers on the surface of the rammed earth specimens under study. The water contact angle of the specimen, coated with a siloxane copolymer containing 10 mol.% of a silane monomer with a fluorine group, is about 140°. The water absorption of the specimen obtained after immersing in water for 24 h is low, at about 3.5 wt.%. In addition, the compressive strength remains more than 80% of the corresponding strength of the specimen which is not immersed in water. It is confirmed that the use of a 10% by volume of the siloxane copolymer containing the fluorine group may enhance the water-repellent performance and economic competitiveness.

Calcium-Catalyzed Synthesis of Fused Furo[2,3-b]furans and Substituted Furans from 2-Oxo Aldehydes and Cyclic Enols.

We report here an atom-economical, syn-diastereoselective synthesis of naphtho-fused furo[2,3-b]furans along with naphthofurans at room temperature using readily available 2-naphthols and 2-oxo aldehydes using an alkaline earth catalyst [Ca(OTf)2]. 2-Oxo aldehydes having both aryl and alkyl substitutions reacted well. A good number of arenols responded to give fused furans, but selected arenols gave only furofurans. Synthetic applications and gram-scale synthesis were also demonstrated to strengthen this strategy.