Different carbon contents of organic carbon sources can be used as the reaction substrates of heterotrophic ammonia assimilation (HAA), which effectively dominates the recovery of available nutrients in wastewater. However, the influences of organic carbon sources on nutrient metabolism, degradation kinetics, and functional microbes of HAA were largely unknown. Here, HAA bioreactors fed with acetate, glucose, sucrose, starch, methanol, and sludge alkaline fermentation liquid (SAFL) were constructed to compare the nitrogen recovery performance, kinetic analysis, sludge characteristics, and microbial community structure. Higher COD and NH4+-N removal efficiencies were found in bioreactors supplied with acetate, glucose, and SAFL. Kinetic analysis showed that the acetate-fed bioreactor had more efficient organic utilization for assimilation. Corynebacterium, Pseudohoeflea, and Methylophaga emerged as the primary assimilation bacteria for typical carbon sources of organic acids, sugars, and alcohols, whereas Halomonas, Corynebacterium, and Marinobacter dominated in SAFL. Acetate- and SAFL-supported sludge particles displayed enhanced internal and external oxygen mass transfer, along with heightened sedimentation performance and deconsolidation ability. High-quality assimilative gene expression, assimilative enzyme activity, and assimilated organic nitrogen product synthesis with direct effects were observed in a reactor supplied with acetate and SAFL. The cost-effectiveness of SAFL preparation positions it as a promising candidate for practical engineering applications. This research underscored the pivotal role of different carbon contents in the nutrient recovery process of the HAA reaction, providing essential insights for optimizing wastewater treatment strategies and enhancing environmental sustainability.