Mus Spretus Research Articles

The Presence of a Shelter in an Open Field Test Has Differential Effects on the Behavior and Stress Response of Two Mouse Species.

The open field test (OFT) is frequently used in research to assess anxiety-like behavior and locomotor activity. Its simple design can lead to the misconception that it is a standardized procedure comparable between laboratories. However, some modifications in the setup can cause changes in behavior. Different species might also react differently to the modifications introduced. There is thus need for a better understanding of the impact of modifications and their value for the species in question. Here, we tested two closely related mouse species, Mus musculus and Mus spretus, in an OFT with and without the presence of a shelter. We assessed mouse exploratory behavior through the analysis of multiple behavioral traits, and stress response through the measurement of circulating cortisol levels. Both species had elevated cortisol levels during the OFT in contrast to control animals which were not exposed to the OFT. While the presence of a shelter in the OFT increased the exploratory behavior in both mouse species, M. spretus, but not M. musculus, showed a reduction in cortisol levels. Also, other measured behaviors show a rather proactive coping strategy of the commensal M. musculus in contrast to a reactive strategy of the non-commensal M. spretus. Our study revealed a strong species-specific influence of the OFT design on the resulting behavior and stress levels of mice, illustrating the importance of OFT designs to account for the characteristics of the species under study. The addition of a shelter might be considered to improve experimental results by promoting animal welfare.

Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations.

The ability to generate multiple RNA transcript isoforms from the same gene is a general phenomenon in eukaryotes. However, the complexity and diversity of alternative isoforms in natural populations remain largely unexplored. Using a newly developed full-length transcript enrichment protocol with 5' CAP selection, we sequenced full-length RNA transcripts of 48 individuals from outbred populations and subspecies of Mus musculus, and from the closely related sister species Mus spretus and Mus spicilegus as outgroups. The data set represents the most extensive full-length high-quality isoform catalog at the population level to date. In total, we reliably identify 117,728 distinct isoforms, of which only 51% were previously annotated. We show that the population-specific distribution pattern of isoforms is phylogenetically informative and reflects the segregating single nucleotide polymorphism (SNP) diversity between the populations. We find that ancient housekeeping genes are a major source of the overall isoform diversity, and that the generation of alternative first exons plays a major role in generating new isoforms. Given that our data allow us to distinguish between population-specific isoforms and isoforms that are conserved across multiple populations, it is possible to refine the annotation of the reference mouse genome to a set of about 40,000 isoforms that should be most relevant for comparative functional analysis across species.

Separation of telomere protection from length regulation by two different point mutations at amino acid 492 of RTEL1.

RTEL1 is an essential DNA helicase that plays multiple roles in genome stability and telomere length regulation. A variant of RTEL1 with a lysine at position 492 is associated with short telomeres in Mus spretus , while a conserved methionine at this position is found in M. musculus , which has ultra-long telomeres. In humans, a missense mutation at this position ( Rtel1 M492I ) causes a fatal telomere biology disease termed Hoyeraal-Hreidarsson syndrome (HHS). Introducing the Rtel1 M492K mutation into M. musculus shortened the telomeres of the resulting strain, termed 'Telomouse', to the length of human telomeres. Here, we report on a mouse strain carrying the Rtel1 M492I mutation, termed 'HHS mouse'. The HHS mouse telomeres are not as short as those of Telomice but nevertheless they display higher levels of telomeric DNA damage, fragility and recombination, associated with anaphase bridges and micronuclei. These observations indicate that the two mutations separate critical functions of RTEL1: M492K mainly reduces the telomere length setpoint, while M492I predominantly disrupts telomere protection. The two mouse models enable dissecting the mechanistic roles of RTEL1 and the different contributions of short telomeres and DNA damage to telomere biology diseases, genomic instability, cancer, and aging.

Naturally sterile Mus spretus hybrids are suitable for the generation of pseudopregnant embryo transfer recipients

For the preparation of embryo transfer recipients, surgically vasectomized mice are commonly used, generated by procedures associated with pain and discomfort. Sterile transgenic strains provide a nonsurgical replacement, but their maintenance requires breeding and genotyping procedures. We have previously reported the use of naturally sterile STUSB6F1 hybrids for the production of embryo transfer recipients and found the behavior of these recipients to be indistinguishable from those generated by vasectomized males. The method provides two substantial 3R impacts: refinement (when compared with surgical vasectomy) and reduction in breeding procedures (compared with sterile transgenic lines). Despite initial promise, the 3Rs impact of this innovation was limited by difficulties in breeding the parental STUS/Fore strain, which precluded the wider distribution of the sterile hybrid. The value of a 3R initiative is only as good as the uptake in the community. Here we, thus, select a different naturally sterile hybrid, generated from strains that are widely available: the B6SPRTF1 hybrid between C57BL/6J and Mus spretus. We first confirmed its sterility by sperm counting and testes weight and then trialed the recovery of cryopreserved embryos and germplasm within three UK facilities. Distribution of sperm for the generation of these hybrids by in vitro fertilization was found to be the most robust distribution method and avoided the need to maintain a live M. spretus colony. We then tested the suitability of B6SPRTF1 sterile hybrids for the generation of embryo transfer recipients at these same three UK facilities and found the hybrids to be suitable when compared with surgical vasectomized mice and a sterile transgenic strain. In conclusion, the potential 3Rs impact of this method was confirmed by the ease of distribution and the utility of sterile B6SPRTF1 hybrids at independent production facilities.

Disentangling the Effects of Climate and Land Uses on Small Mammals in Agroecosystems of NE Spain

We analyzed the two main drivers (climate and land uses) shaping the composition of small mammal communities at 16 localities situated in the confluence of the Mediterranean and Eurosiberian regions (Barcelona, Spain). The study area represents a land use and land cover gradient showing urbanization and crop intensification in the lowlands and forest encroachment in mountain areas. We identified 2458 small mammal individuals of 12 different species from barn owl (Tyto alba) pellets. Three open-land species (Microtus duodecimcostatus, Crocidura russula, and Mus spretus) and one forest/generalist species (Apodemus sylvaticus) were dominant in the diet, accounting for 93% of prey. In order to disentangle the effects of both main drivers on the small mammal community, we used partial constrained ordination techniques, which allowed us to determine the pure effects (and shared effects) of the environmental factors. Land use predictors explained 33.4% of the variance (mostly crops), followed by 23.4% of the variance explained by the geo-climatic variables (mostly rainfall), and an additional 24.8% of the variance was shared by both groups of predictors, totaling 81.6% of environmental variance. The remaining 18.4% of variance was unexplained by environmental matrices. This pattern was consistent with expected associations of species and biotic influences at small spatial scales and highlighted that the number of species increased from the crops in the lowlands towards the highlands covered by deciduous and coniferous forests.

MeCP2 binds to methylated DNA independently of phase separation and heterochromatin organisation

Correlative evidence has suggested that the methyl-CpG-binding protein MeCP2 contributes to the formation of heterochromatin condensates via liquid-liquid phase separation. This interpretation has been reinforced by the observation that heterochromatin, DNA methylation and MeCP2 co-localise within prominent foci in mouse cells. The findings presented here revise this view. MeCP2 localisation is independent of heterochromatin as MeCP2 foci persist even when heterochromatin organisation is disrupted. Additionally, MeCP2 foci fail to show hallmarks of phase separation in live cells. Importantly, we find that mouse cellular models are highly atypical as MeCP2 distribution is diffuse in most mammalian species, including humans. Notably, MeCP2 foci are absent in Mus spretus which is a mouse subspecies lacking methylated satellite DNA repeats. We conclude that MeCP2 has no intrinsic tendency to form condensates and its localisation is independent of heterochromatin. Instead, the distribution of MeCP2 in the nucleus is primarily determined by global DNA methylation patterns.

Detection of hepatitis E virus genotype 3 in an Algerian mouse (Mus spretus) in Portugal

Virus monitoring in small mammals is central to the design of epidemiological control strategies for rodent-borne zoonotic viruses. Synanthropic small mammals are versatile and may be potential carriers of several microbial agents. In the present work, a total of 330 fecal samples of small mammals were collected at two sites in the North of Portugal and screened for zoonotic hepatitis E virus (HEV, species Paslahepevirus balayani). Synanthropic small mammal samples (n = 40) were collected in a city park of Porto and belonged to the species Algerian mouse (Mus spretus) (n = 26) and to the greater white-toothed shrew (Crocidura russula) (n = 14). Furthermore, additional samples were collected in the Northeast region of Portugal and included Algerian mouse (n = 48), greater white-toothed shrew (n = 47), wood mouse (Apodemus sylvaticus) (n = 43), southwestern water vole (Arvicola sapidus) (n = 52), Cabrera’s vole (Microtus cabrerae) (n = 49) and Lusitanian pine vole (Microtus lusitanicus) (n = 51). A nested RT-PCR targeting a part of open reading frame (ORF) 2 region of the HEV genome was used followed by sequencing and phylogenetic analysis. HEV RNA was detected in one fecal sample (0.3%; 95% confidence interval, CI: 0.01–1.68) from a synanthropic Algerian mouse that was genotyped as HEV-3, subgenotype 3e. This is the first study reporting the detection of HEV-3 in a synanthropic rodent, the Algerian mouse. The identified HEV isolate is probably the outcome of either a spill-over infection from domestic pigs or wild boars, or the result of passive viral transit through the intestinal tract. This finding reinforces the importance in the surveillance of novel potential hosts for HEV with a particular emphasis on synanthropic animals.

The role of partially consumed acorn remains in scatter hoards and their implications in oak colonization

Past studies have revealed the benefits of rodent participation in the colonization process of oak species. Certain rodent species (Apodemus sylvaticus and Mus spretus) partially consume acorns, beginning at the basal part and preserving the embryo. Perea et al. (2011) and Yang and Yi (2012) found that during periods of abundance, the remains left after partial consumption continue to be present on the surface and are not transported to caches, given that they are perceived as leftovers. These remains, produced after several visits by the cache owner or by thieving conspecifics, also appear in the caches. If they are perceived as offal, they will not be attacked and may remain in these stores for longer periods, serving as resources for the cache builder. Our objective is to determine whether these remnants are perceived as offal by the rodent generating them or if the remains left by other rodents are considered offal. This is relevant in cases of theft, a common behavior of this species, if the thieving animals reject the remains. The results suggest that foreign remains and the rodents’ own remains are not rejected, but rather, they are consumed in preference to intact acorns. The intact acorns remain in the cache for longer periods and have a greater opportunity to germinate and emerge. Rodents prefer to consume foreign remains first. This may be due to the fact that, in case of shortage, it is considered advantageous to finish the reserves of a potential competitor before depleting one’s own reserves.Significance statementRodents participate in the acorn dissemination process by constructing surface stores (caches). The rodent species studied here partially consumes acorns, beginning with the basal part and preserving the embryo located at the apical end. These partially consumed acorn remains are considered offal and remain in the caches for longer periods, serving as reserves for the rodent. Our objective is to examine whether these acorn remains are viewed as offal by the rodents. We have found that, to the contrary, they are consumed before intact acorns. Intact acorns remain in the caches for longer periods, assuming the role of reserves and taking on a greater capacity to germinate. This species of rodent differentiates between its own remains and those of others, first consuming the foreign offal. Therefore, their own offal remains in the stores for longer periods and may potentially germinate if the embryo is preserved. This behavior has been demonstrated by this rodent species.

The Expansion of House Mouse Major Urinary Protein Genes Likely Did Not Facilitate Commensalism with Humans.

Mouse wild-derived strains (WDSs) combine the advantages of classical laboratory stocks and wild animals, and thus appear to be promising tools for diverse biomedical and evolutionary studies. We employed 18 WDSs representing three non-synanthropic species (Mus spretus, Mus spicilegus, and M. macedonicus) and three house mouse subspecies (Mus musculus musculus, M. m. domesticus, M. m. castaneus), which are all important human commensals to explore whether the number of major urinary protein (MUP) genes and their final protein levels in urine are correlated with the level of commensalism. Contrary to expectations, the MUP copy number (CN) and protein excretion in the strains derived from M. m. castaneus, which is supposed to be the strongest commensal, were not significantly different from the non-commensal species. Regardless of an overall tendency for higher MUP amounts in taxa with a higher CN, there was no significant correlation at the strain level. Our study thus suggests that expansion of the Mup cluster, which appeared before the house mouse diversification, is unlikely to facilitate commensalism with humans in three house mouse subspecies. Finally, we found considerable variation among con(sub)specific WDSs, warning against generalisations of results based on a few strains.

Genic constraint against nonsynonymous variation across the mouse genome

BackgroundSelective constraint, the depletion of variation due to negative selection, provides insights into the functional impact of variants and disease mechanisms. However, its characterization in mice, the most commonly used mammalian model, remains limited. This study aims to quantify mouse gene constraint using a new metric called the nonsynonymous observed expected ratio (NOER) and investigate its relationship with gene function.ResultsNOER was calculated using whole-genome sequencing data from wild mouse populations (Mus musculus sp and Mus spretus). Positive correlations were observed between mouse gene constraint and the number of associated knockout phenotypes, indicating stronger constraint on pleiotropic genes. Furthermore, mouse gene constraint showed a positive correlation with the number of pathogenic variant sites in their human orthologues, supporting the relevance of mouse models in studying human disease variants.ConclusionsNOER provides a resource for assessing the fitness consequences of genetic variants in mouse genes and understanding the relationship between gene constraint and function. The study’s findings highlight the importance of pleiotropy in selective constraint and support the utility of mouse models in investigating human disease variants. Further research with larger sample sizes can refine constraint estimates in mice and enable more comprehensive comparisons of constraint between mouse and human orthologues.

Interaction time with conspecifics induces food preference or aversion in the wild Algerian mouse

The social transmission of a novel food preference can avoid unnecessary costs arising from tasting nonedible foods. This type of social learning has been demonstrated in laboratory rats and mice. However, among wild animals, there may be several constraints that make it less effective. Using wild Algerian mice (Mus spretus) tested in the laboratory, we demonstrate that a preference for a novel food can be transmitted between Observer and Demonstrator individuals and that it is maintained for at least 30 days. However, only half of the Observers acquired a preference for the same food as the Demonstrators, and only when the duration of oronasal investigation was above a certain threshold (≥122 s); below this threshold (<122 s), Observers acquired a preference for the alternative food offered, which was maintained for a shorter time. Sex, size, and identity of individuals did not influence the transmission of social information. The results show that different interaction times will result in animals copying or avoiding the food choices of others. This suggests that the transmission of social information among wild animals is complex and probably influenced by many factors (e.g., dominance, familiarity, and health condition), ultimately conditioning the type of interaction between individuals and its outcome. Testing wild animals and the ecological and social constraints they face is, therefore, an important step in our understanding of how effectively social information is transmitted in nature.

Mice population dynamics and structure over time and space after wildfires

AbstractRodents respond quickly to changes in habitat structure after wildfires. They constitute important prey items for vertebrate predators and influence vegetation structure and regeneration. Assessing the population dynamics of rodents in burnt areas, whether individuals originate from in situ survival or from ex situ immigration, is therefore a key question in understanding the recovery of trophic networks after disturbance. This study aimed to identify the recovery strategies of rodent populations in recently burnt forests in the Mediterranean basin using body condition, reproductive output, sex ratios, and distance covered by wood mice and Algerian mice. Sampling stations were set up at increasing distances from the perimeter of recently burnt areas. Rodents were captured using Sherman traps and measured. Wood mice and Algerian mice lived syntopically within the recently burnt areas studied, the former species being more abundant and the second one selecting drier areas. Results indicated that time since fire, shrub cover, and distance to the perimeter of the burnt area influenced wood mice and Algerian mice population structures. Adult female wood mice mainly remained close to the burnt area perimeter, due to this species' matriarchal structure, while juvenile males dispersed farther into the burnt area. Adult females were also recaptured more frequently than other age and sex categories over time, whereas males covered greater distances. These findings suggest that the recovery strategy of these widespread Mediterranean rodents is mainly driven by ex situ immigration from unburnt areas. These results will be useful for post‐fire management decisions such as non‐intervention, salvage logging or the conservation of open areas, given that mice are a fundamental component of the ecosystem. Results also suggest that management should focus on maintaining good connectivity between burnt and adjacent unburnt areas to support mice populations and facilitate other longer‐term conservation benefits.

A natural variation-based screen in mouse cells reveals USF2 as a regulator of the DNA damage response and cellular senescence.

Cellular senescence is a program of cell cycle arrest, apoptosis resistance, and cytokine release induced by stress exposure in metazoan cells. Landmark studies in laboratory mice have characterized a number of master senescence regulators, including p16INK4a, p21, NF-κB, p53, and C/EBPβ. To discover other molecular players in senescence, we developed a screening approach to harness the evolutionary divergence between mouse species. We found that primary cells from the Mediterranean mouse Mus spretus, when treated with DNA damage to induce senescence, produced less cytokine and had less-active lysosomes than cells from laboratory Mus musculus. We used allele-specific expression profiling to catalog senescence-dependent cis-regulatory variation between the species at thousands of genes. We then tested for correlation between these expression changes and interspecies sequence variants in the binding sites of transcription factors. Among the emergent candidate senescence regulators, we chose a little-studied cell cycle factor, upstream stimulatory factor 2 (USF2), for molecular validation. In acute irradiation experiments, cells lacking USF2 had compromised DNA damage repair and response. Longer-term senescent cultures without USF2 mounted an exaggerated senescence regulatory program-shutting down cell cycle and DNA repair pathways, and turning up cytokine expression, more avidly than wild-type. We interpret these findings under a model of pro-repair, anti-senescence regulatory function by USF2. Our study affords new insights into the mechanisms by which cells commit to senescence, and serves as a validated proof of concept for natural variation-based regulator screens.

Backcrossing as a species restoration technique.

An investigation was conducted on the phenotypic results of mouse hybridization and seven generations of backcrossing, observing reciprocal F1 hybrids and backcrosses of Mus spretus and a laboratory strain of Mus domesticus C57BL/6J. F1 hybrids, backcrosses, and pure control specimens were measured for 6 body characteristics, 4 pelage coloration characteristics, 14 behaviors, and reproduction as reflected in litter size. Backcrossing was pursued for seven generations to FBC7 (i.e., "Backcross 7" or seven generations from commencement of backcrossing from an F1 hybrid female) where species restoration is mathematically calculated to be at 99.7%. Except for a minority of FBC7 M. spretus specimens failing to conform completely to one pelage characteristic, FBC7 specimens were indistinguishable from controls both subjectively and in all areas of measurement. The M. spretus backcross line was followed generation by generation and was largely conforming to controls by FBC4 at latest. The same effect was observed in the reciprocal M. domesticus backcross line. Fertility was negatively affected in F1 hybrids but restored or improved in backcross generations. Discussion is offered on hybridization and backcrossing as it occurs in nature and how it has been used or could be used as an additional ex situ tool in wildlife conservation efforts. It is concluded that conservation-oriented backcrossing is a practical species/subspecies restoration technique and has the potential to make genetic rescue feasible with minimal gene flow at the binomial level. Backcrossing is most applicable in closely monitored ex situ settings (1) where only one sex remains of a given taxon; and (2) where inbreeding depression seriously threatens a remnant taxon's ability to recover, and the only gene flow option is from another distinct species.

Prevalence of Ectoparasites on Small Mammals Inhabiting an Agroforestry System of Western Portugal

The goal of this study was to assess ectoparasite-small mammal host associations in central-west Portugal in native and exotic habitats, respectively, including a cork oak woodland and a Eucalyptus plantation. Mammals were sampled with Sherman and pitfall traps, and ectoparasites were collected and identified in all samples. We trapped 681 small mammals: 5 rodent species - wood mouse, Apodemus sylvaticus (N = 527); the Algerian mouse, Mus spretus (N = 67); Cabrera's vole, Microtus cabrerae (N = 8); the Lusitanian pine vole, Microtus lusitanicus (N = 2); and the black rat, Rattus rattus (N = 1) - and 1 insectivore species - the greater white-toothed shrew, Crocidura russula (N = 76). We identified 4 flea species (Nosopsyllus fasciatus, Ctenophthalmus sp., Typhloceras favosus, and Typhloceras poppei); 5 tick species (Haemaphysalis punctata, Ixodes ricinus, Ornithodoros sp., Rhipicephalus pusillus, and Rhipicephalus sanguineus); and 1 chigger species (Neotrombicula sp.) from hosts. The wood mouse was the small mammal species with the highest overall ectoparasite prevalence, although ticks were the least prevalent taxon. We found that ectoparasite guilds represented a somewhat generalist host pattern, and chiggers presented some host specificity. The data presented herein increase the knowledge regarding ectoparasite prevalence and distribution among small mammal hosts in the Mediterranean. Although surveys of ectoparasites of small mammals in central-west Portugal are not novel, this is the first time that a species belonging to the genus Ctenophthalmus is reported from M. cabrerae (Cabrera's vole) in Portugal.

Detection and Molecular Characterization of Giardia and Cryptosporidium spp. Circulating in Wild Small Mammals from Portugal.

Cryptosporidium spp. and Giardia spp. are important diarrhea-causing protozoan parasites worldwide that exhibit broad host ranges. Wild small mammals can harbor host-adapted and potentially zoonotic species of both parasites. The aim of this study was to investigate Cryptosporidium spp. and Giardia spp. in wild rodents and shrews in Portugal, focusing on the protist's occurrence and genetic diversity. Molecular screening by PCR at the small subunit (SSU) rRNA gene locus of 290 fecal samples from wood mice (Apodemus sylvaticus), southwestern water voles (Arvicola sapidus), Cabrera's voles (Microtus cabrerae), Lusitanian pine voles (Microtus lusitanicus), Algerian mice (Mus spretus) and greater white-toothed shrews (Crocidura russula) in Northeast Portugal revealed the low occurrence of Cryptosporidium spp. (1%) and high occurrence of Giardia spp. (32.8%). The analysis revealed that "species" was the only significant factor associated with the increasing probability of Giardia spp. infection, with the highest prevalence reported in southwestern water voles and Lusitanian pine voles. Cryptosporidium and Giardia species determination at the SSU rRNA gene locus revealed C. muris and G. microti as the only circulating species, respectively. Subtyping of the glutamate dehydrogenase (gdh) and beta-giardin (bg) genes provided evidence of the high genetic diversity within the G. microti clade. This study suggests that rodent-adapted G. microti occurs to a large extent in cricetid hosts and supports the limited role of wild rodents and shrews as natural sources of human infections in Northeast Portugal regarding the investigated parasites. Moreover, this is the first record of G. microti in southwestern water voles, Lusitanian pine voles, Algerian mice, wood mice and Cabrera's voles and C. muris in Cabrera's voles. Finally, this study improves the database of sequences relevant for the sequence typing of G. microti strains and provides new insights about the epidemiology of Giardia spp. and Cryptosporidium spp. in wild rodents and shrews, two parasite genera of high importance for public and animal health.

Effects of Post-Fire Management on a Mediterranean Small Mammal Community

Wildfires simplify ecosystems, modifying the ecological niches of the fauna living in the recently burned areas. Small mammals respond rapidly to changes in habitat structure and composition after fire, but the effects of fire can be ameliorated by some management strategies (e.g., salvage logging). Hence, it is necessary to explore whether alternative management strategies may be able to return the ecosystem to its initial state. We studied the small mammal community by live trapping on eight plots under different post-fire treatments in Sant Llorenç del Munt i l’Obac Natural Park (Barcelona province, NE Spain). At the community level, an increase in overall relative abundance and species density was observed in the burned areas. Apodemus sylvaticus, the most abundant mammal in study area, used woody debris piles as a shelter against predators. Mus spretus was more abundant in post-fire sites with large open areas interspersed with woody debris piles. Crocidura russula steadily increased its presence in later successional stages when ground cover became more complex. Our results suggest that combining different management strategies may be appropriate to improve the habitat suitability and biodiversity of small mammals and other key open-land species throughout the burned area.

Global change effects on Mediterranean small mammal population dynamics: Demography of Algerian mice (Mus spretus) along land use and climate gradients

Climate and land use change are key global change drivers shaping future species' distributions and abundances. Negative interactions among effects of drivers can reduce the accuracy of models aimed at predicting such distributions. Here we analyse how climate and land use affected population dynamics and demography of the Algerian mouse (Mus spretus), an open-land thermophilic Mediterranean small mammal. Change to a warmer and drier climate would facilitate the expansion of the species, whereas landscape change (forest encroachment following extensive land abandonment) would produce its retreat. We correlated abundance and demography parameters computed from captures obtained in 16 plots during a 10-years period (2008–2017; SEMICE small mammal monitoring) with climate, vegetation and land use change. Climate became warmer and dryer, and afforestation due to encroachment occurred in 81 % of plots. Expected positive effects of climate warming, derived from bioclimatic niche models, were counterbalanced by negative effects of both increasing hydric deficit and changes in vegetation and landscape structure. Abundance showed a slight but significant decline (−5 %). The species' range was more resilient to change, as shown by occupancy analyses, apparently due to strong local effects of vegetation structure on occupancy. This result highlighted that negative population trends would not necessarily produce range retractions. Simultaneously analysing both abundance trends and occupancy patterns may thus allow for deeper understanding and more accurate predictions of expected population trends in response to interacting global change drivers.

Machine Learning interspecific identification of mouse first lower molars (genus Mus Linnaeus, 1758) and application to fossil remains from the Estrecho Cave (Spain)

One of the first steps to address palaeontological studies is the taxonomic identification of fossils according to their morphology. Geometric Morphometric techniques together with multivariate statistical analysis are known to be precise tools to achieve this goal. More recent alternative techniques such as Machine Learning are still rarely used in Palaeontology, although it has been shown in various examples that they can offer powerful alternative statistical approaches to analyse quantitative morphometric data. Here we show how Machine Learning applied to two-dimensional geometric morphometric data from the outline shape of the lower first molars of Mus spp. has proven useful to overcome taxonomic problems. We collated a photographic database of 303 lower first molars from modern populations of Mus musculus domesticus and Mus spretus from southwestern Europe and North Africa to compare the performance between classic multivariate statistics and Machine Learning algorithms in identifying the two species from their dental morphology. We also include Late Holocene Mus specimens from the Estrecho Cave (east-central Spain) to predict their specific status. Our results suggest that Machine Learning is more efficient than classical statistical analyses in taxonomic identification of Mus molars, reaching 100% of correct classification. The application of such techniques to fossil material showed that ensemble/stacking algorithms provided robust identification of both M. m. domesticus and M. spretus in the Estrecho Cave assemblage and confirmed that both species colonised the Iberian Peninsula at a time prior to the formation of the site.

Evaluation of bioconcentration of trace elements in the Western Mediterranean mouse Mus spretus at two Moroccan wetland sites

Evaluation of bioconcentration of trace elements in the Western Mediterranean mouse Mus spretus at two Moroccan wetland sites