S15: Interaction between environmental chemicals and toxicants and the human microbiome, Room 217, Floor 2, August 28, 2019, 10:30 AM - 12:00 PM Lung resident bacteria reside in close proximity to the apical side of the airway lining cells, thus forming an intimate interface between cellular regulators of tissue homeostasis and the external environment. The lung microbiota has therefore been suggested to function as gate-keeper for pulmonary health. However, information on the structure and functionality of the human lung microbiota in healthy individuals is limited and it is even less clear how it responds to environmental challenges. We therefore investigated bacterial dynamics in the respiratory tract of healthy individuals as well as in mice in response to cigarette smoke. Within a small monocentric, prospective, controlled study (NCT03562442) the bacterial communities of the upper (nose and oropharynx) and lower respiratory tract (bronchoalveolar lavage) were examined in healthy, current or ex-smokers and never-smokers. Samples were analysed with Illumina MiSeq 16S rRNA gene amplicon sequencing. A microbial community structure dominated by Prevotella, Streptococcus, Veillonella and Actinomyces was found consistently in nasal and oropharyngeal swabs and lavage samples. Further, distinct genera and species of Proteobacteria were mainly found in BAL. In smokers, the oropharyngeal microbiota showed significantly more anaerobic Actinobacteria, as compared to aerobic β-proteobacteria and Fusobacteria. Nasal communities changed with smoking intensity, revealing a higher abundance of Staphylococcus epidermidis in heavy smokers. Although the current smoking status did not influence bronchoalveolar lavage microbial community significantly, changes associated with intense long-term smoking were visible. In particular, the abundance of β- and γ-proteobacteria in bronchoalveolar lavage, e.g. the opportunistic pathogens Stenotrophomonas maltophilia and Serratia marescens, increased while the abundance of Prevotella sp., that has been associated with lung health, decreased. Moreover, these changes persisted partly in ex-smokers. Thus, long-term smoking changes the pulmonary microbiome, leading to an increase of opportunistic pathogens that are known for their resistance to several antibiotics and for causing pneumonia in immunosuppressed patients.
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