Airborne Microbial Communities Research Articles

Effects of Altitude on Airborne Bacteria and Potential Pathogenic Bacteria： A Case of Shigatse of Xizang

Airborne microbes are affected by natural environmental factors and have become a global issue due to their potential threat to human health. To explore the effects of altitude on the communities of microbes and potential pathogenic bacteria, we sampled airborne microbes and soils at sites with different altitudes in Shigatse of Xizang. The results showed a significant difference in bacterial communities between air and soil and a decrease in the contribution of soil to airborne bacteria from the sites with a lower altitude to the sites with a higher altitude. The Chao1 indexes of airborne bacteria were significantly higher in the sites with a lower altitude compared to those with a higher altitude, and the bacterial Bray-Curtis distances between sites with a lower altitude were significantly lower than those between sites with a lower altitude and high altitude. These results indicated that altitude would affect the community patterns of airborne bacteria, and the transport of air would decrease the variations in airborne microbial communities between different sites. Proteobacteria, with 84%-91% of average abundance, predominated in the airborne bacterial communities, but different taxa were enriched in sites with different altitudes. For example, the genera of Flavobacterium and Lactobacillus were enriched in sites with a lower altitude and a higher altitude, respectively. A total of 78 potential bacterial pathogens were detected across all samples, and the relative abundance of them in bacterial communities ranged from 2.69% to 38.19%. These findings indicated that altitude would affect the community compositions of airborne bacteria and potential pathogenic bacteria and suggested the potential threat of airborne bacteria to human health. This study provided a scientific basis for better understanding the distributions of airborne microbes and for air quality improvement and disease prevention in China.

Seasonal variation in airborne microbial communities of the Akiyoshido Cave: Lampenflora dispersed by phototrophic bioaerosols

Lampenflora, such as phototrophic microorganisms, multiply on speleothem surfaces under the show-cave lighting, causing deterioration of the natural and cultural heritages of the caves. Speleothems change color from white to green through microbial photosynthesis and are destroyed by microbial metabolisms. Aerosol transmission are suspected to disperses photosynthetic microorganisms. However, the mechanism underlying the process remains unclear, because the complexity of air ventilation affects the cave atmosphere. In the present study, we collected aerosol samples from the Akiyoshido Cave, which is a special natural monument in Japan and possesses various types of speleothems, to analyze microbial concentrations and communities in the cave atmosphere. Under a fluorescence microscope, phototrophic and heterotrophic microorganisms were observed in the aerosols with in the cave. The aerosol concentrations showed seasonal changes depending on air-flow variations in cave ventilation. High-throughput DNA sequencing targeting 16S rRNA genes revealed that the airborne bacterial communities inside the cave were dominated by members of the phyla Actinomycetota, Bacillota, and Pseudomonadota, originating from the external terrestrial, phyllosphere or freshwater environments, as well as its interior (guano). Cyanobacteria showed small relative abundances (from 1.0 to 10%) randomly in the aerosol samples at several locations in the cave, suggesting that the lampenflora-derived cyanobacteria were dispersed throughout the cave by the ventilation. Additionally, phototrophic microorganisms closely related to the relatives of the genera Leptolyngbya, Calothrix, and Chroococcidiopsis from the phylum Cyanobacteria were isolated from the aerosol samples. These results confirm that Cyanobacteria are one of the candidate microorganisms responsible for lampenflora dispersion and are “alive and airborne” in caves.

Characteristics of air-borne and feces-borne ARGs and microbial community in different livestock farms in China

Livestock farms are hotspots of antibiotic resistance due to the intensive use of antibiotics, in which the characteristics of air-borne and feces-borne antibiotic resistance genes (ARGs) and microbial communities are of great significance. This study delves into the distribution of ARGs and microbial communities across various livestock farms in China, and the correlation of microorganisms between livestock farms and other global environments was investigated. The concentrations of ARGs and mobile genetic elements (MGEs) in air samples were basically at the same level, but those in fecal samples collected from chicken farms were universally higher than those in pig and cattle farms. There was significant ability of ARGs to spread easily among different bacteria in all samples in livestock farms. Additionally, there may be more possible host bacteria of airborne ARGs in chicken farms. In the global-scale analysis of highly similar microbial communities, the database matching with the highest number of similarities to microbial communities collected from livestock farms is genes related to human sources (54.8%). This study advances our understanding of ARG dynamics in different livestock farms and contributes to the development of sustainable livestock management practices.

Atmospheric dispersal shapes rapid bacterial colonization of Icelandic Lava Rocks.

Microorganisms released into the atmosphere by various disturbances can travel significant distances before depositing, yet their impact on community assembly remains unclear. To address this, we examined atmospheric and lithospheric bacterial communities in 179 samples collected at two distinct Icelandic volcanic sites: a small volcanic island Surtsey, and a volcanic highland Fimmvörðuháls using 16S rRNA amplicon sequencing. Airborne microbial communities were similar between sites while significant differences emerged in the communities on lava rocks after 1-year exposure. SourceTracker analysis revealed distinct bacterial populations in the atmosphere and the lava rocks with surrounding soil contributed more significantly to lava rock microbial composition. Nevertheless, shared genera among air, rocks, and local sources, suggested potential exchange between these environments. The prevalent genera shared between rocks and potential sources exhibited stress-resistant properties, likely helping their survival during air transportation and facilitating their colonization of the rocks. We hypothesize that the atmosphere serves as a conduit for locally sourced microbes and stress-resistant distant-sourced microbes. Additionally, bacterial communities on the lava rocks of Fimmvörðuháls showed remarkable similarity after 1 and 9 years of exposure, suggesting rapid establishment. Our study reveals that atmospheric deposition significantly influences bacterial community formation, potentially influencing ecosystem dynamics and microbial communities' resilience.

Impact of climate zones and seasons on indoor airborne microbial communities: Insights from a comprehensive analysis

Bacteria and fungi are ubiquitous throughout built environments and are suspended in the air, potentially affecting human health. However, the impacts of climate zones on the diversity, structure, and stochastic assembly of indoor airborne microbes remain unknown. This study comprehensively analyzed indoor airborne microbes across five climate zones in China during the summer and winter using high-throughput sequencing. The diversity and structure of indoor airborne communities vary across climatic zones. A random forest model was used to identify biomarkers in different climate zones. The results showed no relationship between the biomarkers and their rankings in mean relative abundance. The Sloan neutral model fitting results indicated that the impact of climate zones on the stochastic process in the assembly of indoor airborne microbes was considerably more important than that of seasons. Additionally, the influence of seasons on the diversity, structure, and stochastic assembly process of indoor airborne microbes differed among different climate zones. The diversity, structure, and stochastic assembly processes of bacteria present distinctive outcomes in climate zones and seasons compared with those of fungi. Overall, these findings indicate that customized strategies are necessary to manage indoor airborne microbial communities in each climate zone, season, and for specific microbial species.

Ocular mucosal homeostasis of teleost fish provides insight into the coevolution between microbiome and mucosal immunity

BackgroundThe visual organ plays a crucial role in sensing environmental information. However, its mucosal surfaces are constantly exposed to selective pressures from aquatic or airborne pathogens and microbial communities. Although few studies have characterized the conjunctival-associated lymphoid tissue (CALT) in the ocular mucosa (OM) of birds and mammals, little is known regarding the evolutionary origins and functions of immune defense and microbiota homeostasis of the OM in the early vertebrates.ResultsOur study characterized the structure of the OM microbial ecosystem in rainbow trout (Oncorhynchus mykiss) and confirmed for the first time the presence of a diffuse mucosal-associated lymphoid tissue (MALT) in fish OM. Moreover, the microbial communities residing on the ocular mucosal surface contribute to shaping its immune environment. Interestingly, following IHNV infection, we observed robust immune responses, significant tissue damage, and microbial dysbiosis in the trout OM, particularly in the fornix conjunctiva (FC), which is characterized by the increase of pathobionts and a reduction of beneficial taxa in the relative abundance in OM. Critically, we identified a significant correlation between viral-induced immune responses and microbiome homeostasis in the OM, underscoring its key role in mucosal immunity and microbiota homeostasis.ConclusionsOur findings suggest that immune defense and microbiota homeostasis in OM occurred concurrently in early vertebrate species, shedding light on the coevolution between microbiota and mucosal immunity.1WNPLmNTzstteMxSNP_LzTVideo

Metagenomic and Machine Learning Meta-Analyses Characterize Airborne Resistome Features and Their Hosts in China Megacities.

Urban ambient air contains a cocktail of antibiotic resistance genes (ARGs) emitted from various anthropogenic sites. However, what is largely unknown is whether the airborne ARGs exhibit site-specificity or their pathogenic hosts persistently exist in the air. Here, by retrieving 1.2 Tb metagenomic sequences (n = 136), we examined the airborne ARGs from hospitals, municipal wastewater treatment plants (WWTPs) and landfills, public transit centers, and urban sites located in seven of China's megacities. As validated by the multiple machine learning-based classification and optimization, ARGs' site-specificity was found to be the most apparent in hospital air, with featured resistances to clinical-used rifamycin and (glyco)peptides, whereas the more environmentally prevalent ARGs (e.g., resistance to sulfonamide and tetracycline) were identified being more specific to the nonclinical ambient air settings. Nearly all metagenome-assembled genomes (MAGs) that possessed the site-featured resistances were identified as pathogenic taxa, which occupied the upper-representative niches in all the neutrally distributed airborne microbial community (P < 0.01, m = 0.22-0.50, R2 = 0.41-0.86). These niche-favored putative resistant pathogens highlighted the enduring antibiotic resistance hazards in the studied urban air. These findings are critical, albeit the least appreciated until our study, to gauge the airborne dimension of resistomes' features and fates in urban atmospheric environments.

107 Abundance and Diversity of Microbial Community in Bioaerosol Samples Taken from a French Cheese Dairy

Abstract Bioaerosol samples were taken at a cheese company producing about ten different products. The aims were (i) to investigate airborne microbial community (quantity/diversity) using molecular analytical methods and (ii) to appreciate how molecular methods improve the characterization of bioaerosols. Ambient bioaerosol samples were performed using 37-mm 3-pieces closed-face polypropylene cassettes equipped with 0.8 µm pore size polycarbonate membrane at 2 or 10 L.min-1, in several work areas during winter and summer seasons. Airborne bacteria and fungi were quantified by counting colonies on culture media and by quantitative PCR (qPCR). The microbial community was identified using 16SrRNA and ITS1 genes high-throughput sequencing with sequence analysis performed on the Galaxy Migale platform using the FROGS data processing pipeline. The results showed that ambient concentration levels were working area dependent. A massive emission of microorganisms into the air was found in areas in which a brushing task of cheeses was performed, leading to high concentrations of cultivable (up to 107 CFU/m3) and total (up to 1010 18SrRNA copies/m3) fungi. The correlation between cultivable and total mold is discussed and individual exposures are evoked. The microbial community was characterized by the predominance of the fungal genus Penicillium and their species composition depended on the type of cheese or season. This work has shed new light on these still poorly documented work situations and is essential to refine the diagnosis of the immunoallergic risks of the workers concerned. The presentation discusses the complementarity between culture-based and molecular-based methods for the assessment of bioaerosols.

Airborne microbiomes at a subtropical island in southern China: Importance of the northwest and southeast monsoons

Airborne microbes can survive in the atmosphere, travel intercontinental distances by air mass movement, and colonize in remote area through dry and wet deposition, thus forming a connection between oceanic, atmospheric, and terrestrial systems. However, studies linking the monsoon and bioaerosol transport are extremely rare. Here we applied high-throughput sequencing to investigate airborne microbial community succession on an island in Pearl River Estuary under summer and winter monsoon influence. The microbial communities from local potential sources (i.e., soil, leaf and surface seawater), water-soluble ions, organic carbon and elemental carbon were used to evaluate marine and terrestrial contribution. Our results revealed that airborne microbial communities underwent rapid changes during different monsoons influence (ANOSIM, P < 0.005), especially fungal aerosol. Fungal aerosols were dominant by Cladosporium, Debaryomyces, Rhodotorula, Fusarium, Aureobasidium and Candida during winter monsoon, while Coriolopsis, Ceriporia, Fomes, Phanerochaete, Trametes, Phlebia, and Antrodia were predominant fungal genera during summer monsoon. Redundant analysis showed that changes of air temperature and relative humidity caused by monsoon were the most important driven factors of airborne microbial communities in summer monsoon for airborne microbial communities. In addition, terrestrial sources were the most important contribution, especially that of soil for airborne bacteria. Some taxa were affected by atmospheric transport influenced by monsoon synoptic air mass movement.

What Is Going on in Indoor Air Quality of a University Hospital in Northern Cyprus?

There are two main purposes of microbial monitoring of the inanimate hospital environment. One of them is to monitor hygiene standards, and the second is to determine the presence of nosocomial pathogens. This study was aimed to investigate the indoor environment of the different departments of a university hospital. The prospective study was conducted in a university hospital, a teaching hospital with 143 beds and 30 ICU beds, and a hospital with 6 different wards in Northern Cyprus. Active air sampling was done by using an air IDEAL 3P device. Air samples were taken at 38 points defined before in different parts of the hospital. Our results showed a low level of microorganisms' numbers in microbial airborne communities in a university hospital. Moreover, our results indicated that the temperature of the hospital's indoor environment is not significantly related to the airborne microbial community. On the other hand, our results indicate that the Aspergillus species were mostly isolated in the drug preparation room. The studies have shown that one of the causes of hospital infections is the microorganisms entering the airborne microbial communities. In this case, epidemiology and pathogenesis of airborne microbial communities should be understood.

Vertical distribution of airborne microorganisms over forest environments: A potential source of ice-nucleating bioaerosols

Airborne microorganisms transported from forested areas can influence cloud formation by forming ice nuclei. However, the vertical transportation of airborne microorganisms over forested areas is not well understood. We collected aerosols at three heights, [ground (2 m), canopy top (20 m), and above canopy (500 m)] during the summer, fall and winter, to analyze the airborne microbial communities that were distributed vertically over the forest. During summer and fall, the microbial particles maintained similar concentrations in the forest zone (canopy top and ground) and decreased to 1/10th of the microbial concentration in the above canopy area. The particle concentrations in winter indicated efficient vertical mixing below 500 m. High-throughput DNA sequencing revealed that the airborne microbial communities were composed of terrestrial and phyllospheric species associated with the degradation of decaying plant litters. Regardless of the three seasons, the above canopy was dominated by atmospheric stress-resistant bacteria from the phyla Actinobacteria and Firmicutes. Unlike bacteria, the mushroom-type fungal members of Agaricomycetes grew in relative abundance above the canopy, primarily throughout the summer and winter, while mold-type fungal Dothideomycetes species were often found at all three heights during the fall. The Fusarium, Pseudomonas, and Bacillus isolates, which were obtained from air samples at three heights, indicated high activities of ice nucleation in the water-drop freezing assay. Therefore, ice-nucleating microbial taxa likely originated from fungal and bacterial communities in the soil litter and plant surfaces of the phyllospheric environments.

Fog-Induced Alteration in Airborne Microbial Community: a Study over Central Indo-Gangetic Plain in India.

Fog supports an increase in airborne microbial loading by providing water with nutrients and protecting it from harmful incoming solar radiation. To improve our present understanding of fog-induced alteration in an atmospheric microbial community, a study was conducted during 1 to 14 January 2021 for continuous investigation of airborne bacteria over a rural site, Arthauli (25.95°N, 85.10°E), in central Indo-Gangetic Plain (IGP) in India. An increase of 36% ± 0.4% in airborne bacterial loading was noticed under fog versus prefog conditions, and a decrease of 48% ± 0.4% was noticed under the postfog condition. Airborne bacterial loading had a strong correlation with RH (R2 = 0.56; P < 0.05), temperature (R2 = -0.55, P < 0.05), and wind speed (R2 = -0.52, P < 0.05). Unique types of bacteria, representing about 29% of the whole community, were detected only under foggy conditions, likely by a continuous supply of nutrients and water from a cold, calm, and humid atmosphere. As a result, no significant diurnal variation of bacterial loading was noticed on a foggy day, with a higher daily mean concentration of about (8.4 ± 1.7) × 105 cells · m-3 than that on a typical winter day [(6.3 ± 3.8) × 105 cells · m-3]. A typical winter day experienced about a 60% decrease in bacterial loading in the afternoon in comparison to that in the morning. A 3-day back-trajectory analysis suggests a slow movement of airmass along with the wind blowing from west to central IGP. Fog pauses wind movement, which reduces continuous transportation of urban sources while increasing airborne bacteria from local sources. The abundances of Gp6 (14.8% ± 8.6%), Anaeromyxobacter (7.1% ± 2.8%), and Gp7 (6.8 ± 2.6%) have been observed to increase due to occurrences of fog over central IGP. IMPORTANCE Fog was investigated in the present study as a cause of alteration in the airborne microbial community. Occurrences of fog were responsible for an increase in airborne microbial loading (36%) over central IGP in India due to the easy availability of nutrients and water in the air and dimming of harmful solar radiation. More than 90% of unique bacteria were detected under fog (64%) and postfog (28%) conditions. A few bacteria, like Gp18 (0.5% ± 0.3%), Alicyclobacillus (0.5% ± 0.1%), Sinomonas (0.4% ± 0.2%), and Phenylobacterium (0.4% ± 0.2%), were detected only under foggy conditions. A strong correlation between meteorological parameters and bacterial loading was found in the current research work. The present study provides additional support toward a new direction in interdisciplinary science for the detailed investigations of the effects of meteorological conditions on airborne bacteria and their implications for society.

Analysis of the composition of culturable airborne microorganisms in the archaeological excavation protection site of the Nanhai No. 1 Ancient Shipwreck.

After the recovery of the ship from the sea on 2007, the Nanhai No. 1 Ancient Shipwreck is currently exposed to the air. Air microorganisms settle on wooden shipwrecks, and they can use wood matrix to grow and multiply, causing biocorrosion and biodegradation. In this study, a systematical survey of the composition of culturable airborne microorganisms was performed at the conservation site of the Nanhai No. 1 Ancient Shipwreck. Airborne microorganisms were collected from seven sites in the preservation Nanhai No. 1 area over five periods. Molecular identification of the culturable microorganisms isolated from the air was done by sequencing both 16S rRNA (bacteria) and ITS (fungi) gene regions. The biodegradability of these strains was evaluated by degradation experiments with cellulose and lignin as substrate. The results showed that the composition of the isolated microbial communities was different in each period, and microbial spatial distribution was dissimilar in the same period. In the recent 2020, the dominant bacterial genus was Acinetobacter, and the dominant fungal genera were Penicillium, Aspergillus, and Cerrena. Acinetobacter spp. can degrade cellulose and lignin. Penicillium spp., Aspergillus spp., and Cerrena spp. degraded cellulose but only Cerrena spp. could utilize lignin. These dominant strains may have a harmful effect on the Nanhai No. 1 Ancient Shipwreck. This study provides data on the airborne microbial community found inside the protective chamber where Nanhai No. 1 Shipereck is placed, which can be used as a reference basis for the future conservation of the ship.

Short-range contributions of local sources to ambient air.

Recent developments in aerobiology have enabled the investigation of airborne biomass with high temporal and taxonomic resolution. In this study, we assess the contributions of local sources to ambient air within a 160,000 m2 tropical avian park (AP). We sequenced and analyzed 120 air samples from seven locations situated 160 to 400 m apart, representing distinct microhabitats. Each microhabitat contained a characteristic air microbiome, defined by the abundance and richness of its airborne microbial community members, supported by both, PCoA and Random Forest analysis. Each outdoor microhabitat contained 1% to 18.6% location-specific taxa, while a core microbiome of 27.1% of the total taxa was shared. To identify and assess local sources, we compared the AP dataset with a DVE reference dataset from a location 2 km away, collected during a year-round sampling campaign. Intersection of data from the two sites demonstrated 61.6% of airborne species originated from local sources of the AP, 34.5% from ambient air background, and only 3.9% of species were specific to the DVE reference site. In-depth taxonomic analysis demonstrated association of bacteria-dominated air microbiomes with indoor spaces, while fungi-dominated airborne microbial biomass was predominant in outdoor settings with ample vegetation. The approach presented here demonstrates an ability to identify local source contributions against an ambient air background, despite the prevailing mixing of air masses caused by atmospheric turbulences.

Seasonal taxonomic composition of microbial communal shaping the bioaerosols milieu of the urban city of Lanzhou.

Here, the taxonomical composition and seasonal dynamics of airborne microbial communities were described in the urban city of Lanzhou, Northwest China. Year-long samples were studied in two filter membranes (Quartz and PTFE). Higher microbial loads were reported in the PTFE than in the quartz filter. Onefold decrease was reported in bacterial loads in spring and summer than winter and autumn for both filters. The fungal loadings were lowest during winter and highest during autumn, followed by summer. The microbial communities included Actinobacteria and Proteobacteria, Ascomycota, and Basidiomycota as major components. Maximum abundance of the members from Gammaproteobacteria, Coriobacteria and Clostridia were studied in all seasons on PTFE membrane, followed by, Erysipelotrichia, Negativicutes and Fusobacteria. Members of Actinobacteria and Bacilli showed higher abundance in spring and winter, with a small proportion during autumn. Members of Clostridia, Gammaproteobacteria, Bacilli, and Actinobacteria showed maximum abundance on the quartz filter in all the seasons. Similarly, on the PTFE, fungi including Dothideomycetes and Agaricomycetes were dominant, followed by Saccharomycetes during summer and winter. The result showed that PM2.5, SO42-, NO2-, Na+, EC, and OC are important environmental parameters influencing the seasonal microbial community. However, the relation of the microbiome with the environment cannot be confidently defined because the environmental factors are changeable and yet interrelated.

Airborne microbial community structure and potential pathogen identification across the PM size fractions and seasons in the urban atmosphere

As a vital component of airborne bioaerosols, bacteria and fungi seriously endanger human health as pathogens and allergens. However, comprehensive effects of environmental variables on airborne microbial community structures remain poorly understood across the PM sizes and seasons. We collected atmospheric PM1.0, PM2.5, and PM10 samples in Hefei, a typical rapidly-developing city in East China, across three seasons, and performed a comprehensive analysis of airborne microbial community structures using qPCR and high-throughput sequencing. Overall the bacterial and fungal abundances in PM1.0 were one to two orders of magnitude higher than those in PM2.5 and PM10 across seasons, but their α-diversity tended to increase from PM1.0 to PM10. The bacterial gene abundances showed a strong positive correlation (P < 0.05) with atmospheric SO2 and NO2 concentrations and air quality index. The bacterial gene abundances were significantly higher (P = 0.001) than fungi, and the bacterial diversity showed stronger seasonality. The PM sizes influenced distribution patterns for airborne microbial communities within the same season. Source-tracking analysis indicated that soils, plants, human and animal feces represented important sources of airborne bacteria with a total relative abundance of more than 60% in summer, but total abundance from the unidentified sources surpassed in fall and winter. Total 10 potential bacterial and 12 potential fungal pathogens were identified at the species level with the highest relative abundances in summer, and their abundances increased with the PM sizes. Together, our results indicated that a complex set of environmental factors, including water-soluble ions in PM, changes in air pollutant levels and meteorological conditions, and shifts in the relative importance of available microbial sources, acted to control the seasonal compositions of microbial communities in the urban atmosphere.

Characteristic Changes of Bioaerosols in Beijing and Tsogt-Ovoo During Dust Events

Dust events moving at high altitudes by westerly wind can transport aerosols from Asian deserts to eastern Asia deposition areas such as China. Aerosols do not include only mineral particles but also microbial particles, which are called bioaerosols, and impact the ecosystem and air environment of the deposition area. For identifying the airborne microbial communities transported from the source area to the deposition area, bioaerosol samples were collected in the typical source region (Tsogt-Ovoo in Gobi deserts) and the deposition region (Beijing in Chinese industrial area) during dust events and non-dust days and the sampling sites were compared. The microscopic observation using DAPI fluorescent techniques revealed that the concentration of bioaerosols increased during the dust events in both the source and deposition regions. For the community structures of airborne bacteria at both sites, the dust-event occurrences changed the structure of the bacterial community and increased the diversity of bacterial communities during dust events. Some specific bacterial populations, such as members of Bacteroidetes, dominated during dust events. There is the possibility that specific bacteria can be maintained for a longer time in the atmosphere and might be transported from the source area to the deposition area.

Vertical stratification of the air microbiome in the lower troposphere

The troposphere constitutes the final frontier of global ecosystem research due to technical challenges arising from its size, low biomass, and gaseous state. Using a vertical testing array comprising a meteorological tower and a research aircraft, we conducted synchronized measurements of meteorological parameters and airborne biomass (n = 480) in the vertical air column up to 3,500 m. The taxonomic analysis of metagenomic data revealed differing patterns of airborne microbial community composition with respect to time of day and height above ground. The temporal and spatial resolution of our study demonstrated that the diel cycle of airborne microorganisms is a ground-based phenomenon that is entirely absent at heights >1,000 m. In an integrated analysis combining meteorological and biological data, we demonstrate that atmospheric turbulence, identified by potential temperature and high-frequency three-component wind measurements, is the key driver of bioaerosol dynamics in the lower troposphere. Multivariate regression analysis shows that at least 50% of identified airborne microbial taxa (n = ∼10,000) are associated with either ground or height, allowing for an understanding of dispersal patterns of microbial taxa in the vertical air column. Due to the interconnectedness of atmospheric turbulence and temperature, the dynamics of microbial dispersal are likely to be impacted by rising global temperatures, thereby also affecting ecosystems on the planetary surface.

Relationships between airborne microbial community diversity, heating supply patterns and particulate matter properties

Airborne microbes play critical roles in atmospheric ecology and human health, while the connections of microbial community with anthropic activity, such as heating supply patterns and chemical compositions of particulate matter (PM), remain unclear. The present study demonstrated that district heating supply regions exhibited higher microbial richness than non-district heating supply regions, and microbial richness in PM1 (aerodynamic diameter ≤ 1 µm) was significantly lower than that in PM10 (aerodynamic diameter ≤ 10 µm). Gram-positive bacteria were dominant, and Bacilli accounts for 85% of the noted bacteria. The total concentrations of heavy metals, polycyclic aromatic hydrocarbons (PAHs) and water-soluble ions increased with PM sizes. Heavy metals and PAHs in non-district heating supply regions showed significantly higher concentrations than that in district heating supply regions. Most of tested chemical compositions negatively contributed to microbial community diversity, except for Zn, Cr, Pyrene (Pyr), and Benzo[a]pyrene (Bap). The above results were also affected by heating supply patterns (district heating supply and non-district heating supply). There was a positive correlation between microbial community richness and •OH concentration, and microbial community richness decreased as PM specific surface area increased. This work reveals connections between the properties of PMs and the microbial community diversity with heating supply patterns, and gives novel insights to atmospheric health and carbon neutrality.

Diversity and Source of Airborne Microbial Communities at Differential Polluted Sites of Rome

Biogenic fraction of airborne PM10 which includes bacteria, viruses, fungi and pollens, has been proposed as one of the potential causes of the PM10 toxicity. The present study aimed to provide a comprehensive understanding of the microbial community variations associated to PM10, and their main local sources in the surrounding environment in three urban sites of Rome, characterized by differential pollution rate: green area, residential area and polluted area close to the traffic roads. We combined high-throughput amplicon sequencing of the bacterial 16S rRNA gene and the fungal internal transcribed spacer (ITS) region, with detailed chemical analysis of particulate matter sampled from air, paved road surfaces and leaf surfaces of Quercus ilex. Our results demonstrated that bacterial and fungal airborne communities were characterized by the highest alpha-diversity and grouped separately from epiphytic and road dust communities. The reconstruction of source-sink relationships revealed that the resuspension/deposition of road dust from traffic might contribute to the maximum magnitude of microbial exchanges. The relative abundance of extremotolerant microbes was found to be enhanced in epiphytic communities and was associated to a progressively increase of pollution levels as well as opportunistic human pathogenicity in fungal communities.