Pyriproxyfen has been extensively employed in the Neotropical region for agricultural pest management and insect vectors. However, measuring the sublethal and indirect effects of this active ingredient on nontarget organisms, such as lacewings, is important. Using morphological tools on target organs, we can evaluate these effects and use them as biomarkers for future ecotoxicological studies. Here, we investigated the effects of pyriproxyfen exposure on cocoon spinning and Malpighian tubules in Ceraeochrysa claveri adults. For this purpose, first-instar C. claveri larvae were orally exposed to Diatraea saccharalis egg clusters treated with pyriproxyfen in a solution of 50 or 100 mg a.i. L-1 throughout the larval stage. Insecticide exposure decreases predator survival, mainly in the prepupal and pupal stages, along with changes in the internal and external surfaces and thickness of the cocoon wall. Histopathological and ultrastructural injuries, including cytoplasmic vacuolization, loss of microvilli and a reduction in neutral glycoconjugates, were observed in Malphigian tubule cells of adults (≤ 24 h old). These changes indicate toxicological effects on Malpighian tubules that in lacewing involve cocoon spinning during metamorphosis and, in the adult stage, act in physiological processes of excretion and osmoregulation. Furthermore, it can affect the efficiency of the cocoon in protecting the specimen during metamorphosis against natural enemies and environmental factors. This organ has demonstrated its applicability as a biomarker for assessing the multisystemic effects of insecticides, thereby assisting in future risk assessments aimed at conserving nontargeted specimens.