The impact of climate change has resulted in a decline in agricultural productivity. This study estimated farmers’ perceptions of climate change by comparing Imogiri Sub-district represent highland area and Pundong Sub-district deputize lowland area farmers in Bantul Regency. This study collected data using questionnaires to 79 respondents then analysis by likerts scale and descriptive statistical. The results showed that there six indicators of climate change became farmers’ perceptions. The farmers perception on highland regarding climate change is that 54% of farmers feel a decrease in rainfall, 54% feel drought, 55.2% feel a longer dry season, 60.8% feel reduced water sources, 74.4% feel a decrease in crop quality and 73.2% feel a decrease in crop quantity. At the same time, the perception of farmers in the lowland area regarding climate change is 66.9% of farmers feel a decrease in rainfall, 68.28% feel drought, 71.03% feel a longer dry season, 68.28% feel reduced water sources, 77.93% feel a decrease in crop quality and 77.93% feel a decrease in crop quantity. The importance of farmers’ perceptions of climate change may be used to adaptation from climate change. Understanding farmers’ perceptions can aid the impact of climate change on agricultural productivity.