Agricultural Habitats Research Articles

Diversity and abundance of migratory waterbird communities in natural and artificial agricultural wastewater habitats of New Valley Governorate, Egypt

Diversity and abundance of migratory waterbird communities in natural and artificial agricultural wastewater habitats of New Valley Governorate, Egypt

Using a multi-scale approach to examine the effects of field margins and landscape features on predatory carabid communities in crop fields

Carabid beetles are major predators in agro-ecosystems. The composition of their communities within crop environments governs the pest control services they provide. Field margins and landscape features are known to affect carabid community composition, yet evidence is currently lacking that can be used to support land management decisions targeted at optimising predation services at the farm scale. We used experimental margins across a farm site to test carabid communities in crop areas, margins, and adjacent habitats sampled in the summer. We used novel subterranean trapping with standard pitfall trapping, to distinguish above ground and below ground activity of adults and larvae in different farm habitats. Crop type was the major influence on carabid communities in crop areas. This was followed by landscape influences in terms of adjacent habitat and boundary features, and whilst significant, margin type explained relatively little variance in summer carabid communities in-field. Trap type revealed differential activity by species. Responses to crop type, landscape factors, and margin type also varied by species. Overall, abundances were less in association with margins than control of no margin. Particularly, abundances were lower in the spillover zone adjacent to grass margins, and in the wildflower margins themselves. Carabid larvae showed notably higher abundances in association with an absence of field margins. Measures to boost key carabid species in crop areas should be considered at a farm scale, taking into account potential barrier effects, and potential buffer effects.

Astroviruses in terrestrial Malagasy mammals.

Small terrestrial mammals are major hosts of infectious agents responsible for zoonotic diseases. Astroviruses (AstVs)-the cause of non-bacterial gastroenteritis mainly affecting young children-have been detected in a wide array of mammalian and avian host species. However, understanding the factors that influence AstV infection within and across hosts is limited. Here, we investigated the impact of land use changes on AstVs in terrestrial small mammals in rural northeastern Madagascar. We sampled 515 small mammals, representing seven endemic and four introduced species. Twenty-two positive samples were identified, all but one of which were found in the introduced species Mus musculus and Rattus rattus (family Muridae), with a positivity rate of 7.7% (6/78) and 5.6% (15/266), respectively. The non-introduced rodent case was from an endemic shrew-tenrec (family Tenrecidae). We found the highest positivity rate of AstVs infection in brushy regrowth (17.5%, 7/40) as compared to flooded rice fields (4.60%, 8/174), secondary forest (4.1%, 3/74), agroforest (3.6%, 1/28), village (2.61%, 3/115), and semi-intact forest (0%, 0/84). A phylogenetic analysis revealed an association between AstVs and their rodent host species. None of the viruses were phylogenetically related to AstVs previously described in Malagasy bats. This study supports AstV circulation in synanthropic animals in agricultural habitats of Madagascar and highlights the need to assess the spillover risk to human populations in rural areas.

Land-use change alters specialist bee diet and drives body size declines

ContextLand-use change can cause decreases in plant abundance and richness and the replacement of wild plants with domesticated plants. Changes in plant community composition disrupt mutualistic plant-pollinator interactions with ecological consequences for plants and pollinators, and especially for specialists that rely on certain plants.ObjectivesWe assessed the effects of land-use change and subsequent shifts in plant communities on resource collection and body size for a bee pollinator, Habropoda laboriosa, a purported specialist of blueberries and related Ericaceae plants.MethodsWe collected Habropoda laboriosa across a gradient of land use in north-central Florida including agricultural, natural, and urban habitats. We assessed landcover and floral community composition at each site and related these to bee body size (intertegular distance) and resource use (proportion host plant pollen and pollen diversity collected).ResultsHost plant pollen collection and bee body size generally responded similarly to the landscape, both increasing with habitats containing host plants (blueberry farms and natural habitat) but decreasing with urban development. However, host pollen collection and bee body size responded in opposite ways to overall cropland in the landscape, with cropland negatively affecting body size despite positively affecting host pollen collection, indicating other factors associated with cropland might drive declines in bee body size.ConclusionsLand-use change can adversely affect bee diet and body size, and changes in diet likely contribute to changes in body size over time. Specialists are particularly at risk for negative impacts of land-use change due to their inability to shift plant hosts.

Lack of glucocorticoid flexibility is indicative of wear-and-tear in Hyla versicolor tadpoles from agricultural environments

In habitats where stressors are frequent or persistent, it can become increasingly difficult for wildlife to appropriately match their endocrine responses to these more challenging environments. The dynamic regulation of glucocorticoid (GC) hormones plays a crucial role in determining how well individuals cope with environmental changes. Amphibians exposed to agricultural stressors can dampen aspects of their GC profile (baseline, agitation, recovery, stress responsiveness, and negative feedback) to cope in these stressful environments, but this dampening can lead to reductions in an individual's reactive scope and a loss of endocrine flexibility. Organic agriculture could potentially limit some of these effects, however, little is known about how amphibians respond physiologically to organic agricultural environments. We compared GC profiles of Hyla versicolor tadpoles from three treatments: natural ponds (<5% agriculture within 500m), ponds near organic farms, and ponds near conventional farms. We hypothesized that tadpoles would cope with agricultural habitats by dampening stress responsiveness and exhibiting more efficient negative feedback and that the magnitude of these changes in response would differ based on agricultural method. We found that tadpoles from conventional and organic ponds were less likely to downregulate GCs via negative feedback after stressor exposure than tadpoles from natural ponds. For agricultural tadpoles that did downregulate GCs after the stressor, we found lower stress responsiveness and faster downregulation to baseline corticosterone than tadpoles from natural ponds. These results point to an accumulation of wear-and-tear, leading to an overall reduction in reactive scope and limited GC flexibility in our agricultural tadpoles. Regardless of agricultural method used, agricultural tadpoles exhibited the same patterns of GC response, indicating that current efforts to incentivize farmers to switch to organic farming methods may not be sufficient to address negative agricultural impacts on amphibians.

Population status of a nocturnal primate (the Philippine tarsier- Carlito syrichta, Linnaeus, 1758) in an agricultural area of Subayon, Bilar, Bohol.

The destruction of wildlife habitats due to the exponential growth of human population and its encroachment into wild areas is a major threat to many species around the world. In order to understand the effects of human disturbance on the Philippine tarsier (Carlito syrichta), we evaluated its population status by quantifying the species' population density in an agricultural habitat and assessed the degree of human disturbance in the area. We did the study in Subayon, Bilar, Bohol, where we surveyed 32ha out of the total 115ha of the village between April and June 2017. We predominantly used vocal activity to identify the presence and absence of tarsiers, supplementing the data with incidental sightings. In addition, human disturbances were assessed and described qualitatively. We estimated the population density on 75 individuals per square kilometer. The human disturbance was evidenced in 28 out of 32 plots, which indicates that the entire area has already been disturbed. This study showed that the Philippine tarsier could inhabit highly altered habitats such as agricultural landscapes and suggest that Subayon village might be important for the conservation of this species. We provided another example of the ecological flexibility of otherwise specialised nocturnal primates able to inhabit agricultural areas. To avoid conflicts with humans and to conserve such a species in the future, education, outreach and active involvement of local people are essential.

Diversity and Abundance of Migratory Waterbird Communities in Natural and Artificial Agricultural Wastewater Habitats of, New Valley Governorate, Egypt.

Diversity and Abundance of Migratory Waterbird Communities in Natural and Artificial Agricultural Wastewater Habitats of, New Valley Governorate, Egypt.

Sea Barley (Hordeum Marinum) Seed Germination Ecology and Seedling Emergence

Sea barley is weedy grass in agricultural landscapes and infrastructure habitats (roads, railroads, etc.) in Golestan province (the northern part of Iran). This study investigated the germination of sea barley in response to temperature, water potentials, salinity, pH levels, waterlogging, heat stress and also seedling emergence in response to burial depth. Results showed that sea barley seeds germinated over a wide range of temperatures from 5 to 35 °C, with the highest germination at 25 °C. Seed germination was rapidly reduced with increasing osmotic potential so that germination declined by 36% at –0.2 MPa. This was also the case for the salinity stress, and germination declined by 30% at 40 mM NaCl. Seed germination was the highest (&gt; 65%) in 6 to 7 pHs and no germination was observed at alkali levels. Heat stress completely inhibited the germination of seeds at all tested temperatures and durations. Sea barley seed germination was higher than 50% after being waterlogged for 45 days, and some germination (12%) still occurred 60 days after waterlogging. The highest seedling growth occurred at 1–2 cm soil depth and was negligible at ≥5 cm soil depths. The results of this study indicate that deep tillage or flamethrower may be good options to mitigate the negative impacts of this weed.

Non-invasive surveillance of shared pathogens in the Eurasian brown bear (Ursus arctos) human interface

Multi-host communities are perfect scenarios for the emergence and spread of pathogens, threatening the recovery of endangered, isolated, or inbred populations, such as the brown bear (Ursus arctos) in northwestern Spain. The population recovery in recent years has forced bears to occupy highly anthropized areas, increasing their interaction with human and domestic animals, with potential consequences for global health. During 2022–2023 a survey of parasites, bacteria and viruses shared between wildlife, domestic animals and humans was performed in this population using non-invasive surveillance, i.e., bear fecal samples (n = 73) and sponge-based sampling of trees (n = 42; 14 rubbed trees and 28 control trees). Pathogen detection rates were defined as the percentage of qPCR or culture-positive samples. Generalized linear models were fitted to assess their relationship with environmental variables including dispersion of the human population, and percentage of agricultural and periurban habitats in a 6 km-buffer around each sample. Canine Adenovirus type 1 (45.2%), Giardia spp. (15.1%), Salmonella spp. (12.3%), and extended-spectrum-beta-lactamases (ESBL) Escherichia coli (1.4%) were identified in fecal samples. In contrast, only five sponges from three rubbed and two control trees resulted positive to E. coli (14.3%). The results suggest that several pathogens are common in the Cantabrian brown bear population and that anthropization of the territory modulates their prevalence and richness.The effective design of management programs for bear conservation will require a one-health approach, in which genetic analysis of non-invasive samples can be key tools for the sanitary surveillance at the wildlife-livestock-human interface.

Ground beetle movement is deterred by habitat edges: a mark-release-recapture study on the effectiveness of border crops in an agricultural landscape.

Border crops can increase beneficial insect biodiversity within agricultural fields by supplementing insects with food and nesting resources. However, the effectiveness of border crops relies on insect movement between adjacent habitats and some insects might consider habitat boundaries as barriers. Therefore, understanding insect movement between habitats is needed to determine the effectiveness of border crops for ecosystem services such as pest control within agricultural habitats. Our objective was to compare ground beetle (Coleoptera: Carabidae) movement across soybean plots that were bordered by corn and grassland habitat to determine whether habitat boundaries were considered barriers of movement to predatory beetles. Using a grid of pitfall traps within these habitats, we conducted a mark, release, and recapture experiment to track and evaluate ground beetle movement patterns. We found that ground beetles stayed in the habitat of their release and that movement between habitats, despite the type of bordering habitat or type of edge, was uncommon. We also found that long-distance movement was rare as most beetles moved less than 5 m (regardless of release or recaptured habitat) and movement was perpendicular to habitat edges. These results suggest that any edge habitat, including agricultural-agricultural boundaries and natural-agricultural boundaries, are likely barriers to ground beetle movement. Therefore, in order for border crops to be effective in pest management by ground beetles, making habitat edges more permeable, especially using techniques such as edge softening, could promote cross-habitat movement and ultimately contribute to natural pest control in agricultural systems.

Molecular epidemiological study of Scrub Typhus in residence, farm and forest habitats from Yunnan Province, China.

The number of people suffering from scrub typhus, which is not of concern, is increasing year by year, especially in Yunnan Province, China. From June 1, 2021 to August 15, 2022, a total of 505 mammalian samples were collected from farm, forest, and residential habitats with high incidence of scrub typhus in Yunnan, China, for nPCR (nested PCR) and qPCR (quantitative real-time PCR) detection of Orientia tsutsugamushi. A total of 4 orders of murine-like animals, Rodentia (87.52%, n = 442), Insectivora (10.29%, n = 52), Lagomorpha (1.79%, n = 9) and Scandentia (0.40%, n = 2) were trapped. Comparing the qPCR infection rates in the three habitats, it was no significant difference that the infection rate of residential habitat (44.44%) and that of the farm habitat (45.05%, P>0.05), which is much larger than that of the forest habitat (3.08%) (P<0.001). Three genotypes (Karp-like, Kato-like and TA763-like) of O. tsutsugamushi were found from Yunnan, China in this study.

Quantifying the amount of land lost to artificial surfaces in European habitats: A comparison inside and outside Natura 2000 sites using a quasi-experimental design

The conversion of natural environments to artificial surfaces has significant irreversible impacts on biodiversity and ecosystem services. The European Union (EU) has set ambitious goals to combat land artificialisation, including achieving “no net land take” by 2050. It also plans to expand its network of protected areas, including the Natura 2000 (N2K) sites, to 30 % of its area by 2030. However, studies have shown that land artificialisation continues to occur even within N2K sites. It has not yet been examined, though, which habitats are most affected. To address this gap, we used a high-resolution spatial layer of the EU's habitats and layers showing impervious surfaces across the EU to quantify and compare the current levels of artificial surfaces within each habitat inside and outside N2K sites. We also compared the changes in impervious surfaces between 2012 and 2015 and 2015–2018. We found that the total extent of impervious surfaces, and their rates of change, were lower within the N2K sites for all habitats examined. However, patterns varied: coastal habitats, grasslands, and agricultural habitats had higher levels of artificial surfaces than others, even within N2K sites. Our findings indicate that although the planned expansion of the N2K network can help mitigate the artificialisation of threatened habitats, N2K sites do not entirely halt land conversion. Member States should further improve the management effectiveness of NK2 sites and promote financial and policy instruments addressing land artificialisation, e.g., through land recycling, to safeguard vulnerable habitats and achieve the EU's conservation objectives.

Agricultural habitat use and selection by a sedentary bird over its annual life cycle in a crop-depredation context

BackgroundModern agriculture has undoubtedly led to increasing wildlife-human conflicts, notably concerning bird damage in productive and attractive crops during some parts of the annual cycle. This issue requires utmost attention for sedentary birds that may impact agricultural crops at any stage of their annual life cycle. Reducing bird-human conflicts requires a better understanding of the relationship between bird foraging activity and the characteristics of agricultural areas, notably with respect to changes in food-resource availability and crop sensitivity across the year.MethodsWe explored how GPS-tagged adult male western jackdaws– sedentary corvids– utilize agricultural areas throughout their annual cycle, in a context of crop depredation. More precisely, we described their daily occurrence distribution and the extent of habitat use and selection consistency with respect to landscape composition across time.ResultsJackdaws moved in the close agricultural surroundings of their urban nesting place over the year (< 2.5 km from the nest, on average). Daily occurrence distributions were restricted (< 2.2 km2), relatively centered on the nesting locality (distance between the daily occurrence centroid and the nest < 0.9 km), and rather spatially stable during each annual life-cycle period (overlap range: 63.4–76.1%). Their foraging patterns highlighted that they fed mainly in grasslands all year round, and foraged complementarily and opportunistically in maize (during sowing– coinciding with the first stages of the birds’ breeding period) and cereal crops (during harvesting– their post-fledging period).ConclusionsOur findings demonstrate the very limited space use by breeding male jackdaws which foraged preferentially in grasslands. We call for future investigations in other agricultural contexts and also considering non-breeders for extrapolation purposes.

Feasting in mussel farms fattens up snapper (Chrysophrys auratus) compared to snapper in adjacent natural habitats

AbstractThe presence of wild fish in and around aquaculture habitats is often assumed a response to food resources within these habitats, either from input feed, the presence of cultured species, and/or the assemblage of biofouling that naturally colonises aquaculture structures. The nutritional quality of the food resources consumed by wild fish in aquaculture habitats is also important in determining their nutritional condition and subsequent productivity. Few studies have investigated the nutritional quality of prey in aquaculture habitats, and these have mostly focused on fed aquaculture by tracking manufactured fish pellets into the diets of wild fish. However, in non‐fed aquaculture, the assemblage of cultured and biofouling species may also provide a nutritional benefit to fish feeding in these habitats. The Australasian snapper, Chrysophrys auratus, are commonly present as adults within coastal mussel farms in New Zealand and tend to become a resident species. This study investigated the nutritional quality of the gut contents of snapper in soft‐sediment habitats within and outside of New Zealand green‐lipped mussel farms. Total lipid, protein, carbohydrate and total calorific content were measured from the gut contents of snapper sampled from mussel farm and natural (i.e. control) habitats. Snapper in mussel farms had double the dietary intake of lipid (16% vs. 8%) from consuming lipid‐rich bivalves and barnacles which are in abundance in mussel farms. Higher lipid intake can contribute to improved nutritional condition, reproduction and growth in snapper. However, the higher dietary lipid intake of snapper in mussel farms did not increase their overall body condition (i.e. Fulton condition index). This may be due to the coarse nature of this measure, or the use of the additional lipid in more rapid somatic growth or reproductive outputs, possibilities that warrant examination through further research. Overall, this study shows for the first time the potential ecosystem benefits of shellfish aquaculture in provisioning nutritionally valuable prey for coastal fish populations.

Soil Erosion Mapping and Severity Analysis Based on RUSLE Model on Welmel Catchments of Ganale-Dewa River Basin Bale Lowland South Eastern Ethiopia

Soil erosion is a kind of environmental deterioration through decreased agricultural output, increased floods, and habitat loss, soil degradation has an impact on many people's livelihoods, either directly or indirectly. In many developing tropical nations throughout the world where soil and water conservation (SWC) planning and management initiatives are either ineffective or nonexistent, soil erosion is on the rise. Because there isn't precise scientific research that gives information, identifying locations that are susceptible to soil erosion is also insufficient. The Oromia area of Ethiopia, where the majority of livelihoods mainly rely upon agriculture, is home to the little-recognized watershed of Welmel. A thorough understanding of the spatial variability across various climatic zones, land uses, and soil erosion is crucial for the planning of successful SWC management approaches. Through the use of a geographic information system (GIS), remote sensing (RS), and numerous characteristics such as land uses, and climate, this study has attempted to identify prospective places in need of SWC techniques by undertaking a spatial modeling of soil erosion within the Welmel watershed's Genale Dawa basin. The revised universal soil loss equation (RUSLE), which was previously modified for Ethiopian circumstances, was utilized to predict potential soil loss after laboratory study and processing multiple input datasets in ArcGIS to get the requisite six RUSLE model input parameters. It made use of data from a digital elevation model (DEM) on interpolated rainfall erosivity (R), soil erodibility (K), plant cover (C), topography (LS), and conservation practices (P) from satellite pictures. The study demonstrates that the RUSLE using GIS taking into account various climates and land management practices provides a great advantage in that it enables one to spatially analyze multilayer data to identify areas that are susceptible to soil erosion and subsequently develop the be

Drought influences habitat associations and abundances of birds in California's Central Valley

AbstractAimAs climate change increases the frequency and severity of droughts in many regions, conservation during drought is becoming a major challenge for ecologists. Droughts are multidimensional climate events whose impacts may be moderated by changes in temperature, water availability or food availability, or some combination of these. Simultaneously, other stressors such as extensive anthropogenic landscape modification may synergize with drought. Useful observational models for guiding conservation decision‐making during drought require multidimensional, dynamic representations to disentangle possible drought impacts, and consequently, they will require large, highly resolved data sets. In this paper, we develop a two‐stage predictive framework for assessing how drought impacts vary with species, habitats and climate pathways.LocationCentral Valley, California, USA.MethodsWe used a two‐stage counterfactual analysis combining predictive linear mixed models and N‐mixture models to characterize the multidimensional impacts of drought on 66 bird species. We analysed counts from the eBird participatory science data set between 2010 and 2019 and produced species‐ and habitat‐specific estimates of the impact of drought on relative abundance.ResultsWe found that while fewer than a quarter (16/66) of species experienced abundance declines during drought, nearly half of all species (27/66) changed their habitat associations during drought. Among species that shifted their habitat associations, the use of natural habitats declined during drought while use of developed habitat and perennial agricultural habitat increased.Main ConclusionsOur findings suggest that birds take advantage of agricultural and developed land with artificial irrigation and heat‐buffering microhabitat structure, such as in orchards or parks, to buffer drought impacts. A working lands approach that promotes biodiversity and mitigates stressors across a human‐induced water gradient will be critical for conserving birds during drought.

Interactive effects of agricultural landscape heterogeneity and weather conditions on breeding density and reproductive success of a diurnal raptor.

Agricultural intensification and climate change are serious threats toward animal populations worldwide. Agricultural intensification reduces the heterogeneity of agricultural habitats by diminishing crop variation and destroying microhabitats, such as small woody features, whereas the effects of climate change range from the growing frequency of weather extremes to disrupted prey-predator dynamics. We collected long-term ringing data from a population of Eurasian kestrels (Falco tinnunculus) located amidst agricultural areas in western Finland during 1985-2021, which we combined with density indices of their main prey species (voles), spatial data consisting of land cover classification of kestrel territories, and weather data, to study the effects of different environmental drivers on breeding density and success. We found that the density of inhabited nests rose with vole abundance and springtime snow depth, with the overall trend of population growth being stronger in areas with more heterogeneous landscapes. Clutch size was influenced negatively by the age of male parent and landscape heterogeneity, and positively by vole abundance, with rainfall having a negative influence conditional to other variables. Likewise, the number of produced fledglings was affected by male age, but it was additionally positively associated with landscape heterogeneity and its interaction with rainfall, with greater fledgling output in heterogeneous landscapes during high precipitation. The discrepancy between factors predicting large clutches and high numbers of fledglings suggests that while kestrels do not prefer heterogeneous landscapes when prospecting for territories, heterogeneous habitats provide better circumstances for foraging during the nestling period, which ensures nestling survival, particularly during adverse environmental conditions. Therefore, breeding in areas under intense agricultural use is more suboptimal to kestrels than their territory preferences would indicate. As changing climate may reduce prey availability and heighten the probability of weather extremities, agricultural intensification may lead to weaker reproductive success in densely populated farmland habitats.

Assessing the potential risks of climate change on the natural capital of six countries resulting from global warming of 1.5 to 4 °C above pre-industrial levels

We present the results from a new framework providing an assessment of how climate change risks to natural capital accrue with warming of 1.5–4 °C in six countries (China, Brazil, Egypt, Ethiopia, Ghana, and India). Unlike typical biodiversity and climate change studies, this assessment also considers landcover and population changes across a range of 17 ecosystem services. The potential impacts of climate change (alone) on natural capital at 1.5 °C is greatest in Brazil and least in Ghana. However, when population and landcover change are included, areas projected to be at high natural capital risk begin to accrue by 1.5 °C in all countries. By 2 °C, Ethiopia and Ghana show increasing areas at high risk, even though they are at low risk owing to climate alone. Thus, current impacts to biodiversity and ecosystem services and changes in potential demand coupled with warming exceed changes projected by climate alone. However, this also indicates that there is adaptation potential, especially with warming of < 2 °C, to reduce risk through restoring habitat. At lower levels of warming, targeted restoration of marginal agricultural habitats would increase the bank of natural capital for use by people and provide support for remaining agricultural lands. By 3 °C, the adaptation potential from restoration is substantially less: < 1% in Brazil, India and Egypt; 7–8% in China and Ethiopia; but still 26% in Ghana. This indicates that restoration as an adaptation option for biodiversity, and thus, natural capital, rapidly decreases with increasing temperatures. By 2100, factoring in population change (SSP2), current ecological footprint, and current landcover, even with only 1.5 °C warming, large parts of Brazil, eastern China, most of Egypt, much of Ethiopia, southwestern Ghana (except for protected areas), and most of India are at high to extreme natural capital risk with an adaptation deficit potentially equating to a soft adaptation limit.

Citizen science shows that small agricultural streams in Germany are in a poor ecological status

Agricultural pesticides, nutrients, and habitat degradation are major causes of insect declines in lowland streams. To effectively conserve and restore stream habitats, standardized stream monitoring data and societal support for freshwater protection are needed. Here, we sampled 137 small stream monitoring sites across Germany, 83 % of which were located in agricultural catchments, with >900 citizen scientists in 96 monitoring groups. Sampling was carried out according to Water Framework Directive standards as part of the citizen science freshwater monitoring program FLOW in spring and summer 2021, 2022 and 2023. The biological indicator SPEARpesticides was used to assess pesticide exposure and effects based on macroinvertebrate community composition. Overall, 58 % of the agricultural monitoring sites failed to achieve a good ecological status in terms of macroinvertebrate community composition and indicated high pesticide exposure (SPEARpesticides status class: 29 % “moderate”, 19 % “poor”, 11 % “bad”). The indicated pesticide pressure in streams was related to the proportion of arable land in the catchment areas (R2 = 0.23, p < 0.001). Also with regards to hydromorphology, monitoring results revealed that 65 % of the agricultural monitoring sites failed to reach a good status. The database produced by citizen science groups was characterized by a high degree of accuracy, as results obtained by citizen scientists and professionals were highly correlated for SPEARpesticides index (R2 = 0.79, p < 0.001) and hydromorphology index values (R2 = 0.72, p < 0.001). Such citizen-driven monitoring of the status of watercourses could play a crucial role in monitoring and implementing the objectives of the European Water Framework Directive, thus contributing to restoring and protecting freshwater ecosystems.

STARdbi: A pipeline and database for insect monitoring based on automated image analysis

Insects are highly abundant and diverse, and play major roles in ecosystem functions. Monitoring of insect populations is key to their sustainable management. However, the labor and expertise needed to identify insects, and the challenges of archiving the wealth of data collected in monitoring programs, often limit these efforts. We describe a pipeline to reduce the barriers associated with curating and mining big data of insect biodiversity. The pipeline, STARdbi, includes capturing flying insects with sticky traps, scanning the traps, storing the trap-images in a public database with a web-based interface, and applying machine learning models to extract information from the images. To illustrate the insights that can be gained from STARdbi, we describe two case studies. One of them involves monitoring of circadian activity patterns of grain pests and of their natural enemies, and the other compares insect abundance, biomass and size distributions between agricultural and semi-natural habitats. We invite the community of insect ecologists to contribute to the STARdbi database, and to use its image analysis tools to address diverse ecological and evolutionary questions.