The level of aggregation and aggregate morphology of metallic nanoparticles are factors that influence the SERS signal (surface-enhanced Raman scattering), affecting reproducibility and sensitivity. This study presents a systematic evaluation of the colloidal aggregation on the SERS signal by combining transmission electron microscopy and UV-vis extinction spectroscopy. It focuses on the effect of two methods of sample preparation ("external standard method-ESM" and "standard addition method-SAM") on the SERS signal using the fungicide thiabendazole (TBZ) in Ag colloid as a probe molecule. The TBZ critical concentration (concentration for which SERS reaches the maximum intensity) was 6.0 × 10-6 mol/L for ESM and 1.5 × 10-6 mol/L for SAM. Besides, TBZ exhibited a sigmoid-type isotherm for ESM, indicating formation of a TBZ first layer on Ag nanoparticles at lower concentrations (Ag aggregates more compact; size <500 nm) and TBZ multilayers at higher concentrations (Ag aggregates more branched; >2 μm). For SAM, the TBZ first layer formation was also observed at lower concentrations (Ag aggregates more branched; <2 μm). However, at higher concentrations, the Ag colloid degradation/precipitation was observed (Ag aggregates more compact; >2 μm). The Ag aggregation mechanisms align with reaction-limited colloidal aggregation at lower concentrations and diffusion-limited colloidal aggregation at higher concentrations. We believe these results contribute to the SERS research field despite all of the work already done over its 50-year history.