AbstractTau phosphorylation shows direct clinical importance as the hyperphosphorylation and aggregation of tau exists in a range of tauopathies. However, it is still challenging to study tau phosphorylation owing to its multiple and adjacent phosphorylation sites in the tau sequence. To address this challenge, here, a designed T232K/K238Q mutant aerolysin nanopore is introduced which synergistically incorporates the enhanced electrostatic interaction at T232K site and the high repelling barrier at K238Q site. The distinct current blockages produced by a T232K/K238Q aerolysin sensor achieve nearly 100% identification accuracy for the characteristic distribution of unphosphorylated tau peptide, pS262‐, pT263‐tau peptide, and pS262/pT263‐tau peptide. The excellent sensing ability of the T232K/K238Q nanopore originates from the extremely slow translocation speed which prolongs the duration up to tens or hundreds milliseconds for a nine‐amino‐acid peptide. It is envisioned that the design ideas of the T232K/K238Q aerolysin nanopore can be further applied to analyze other protein/peptide post‐translational modification as it provides the exquisite sensitivity for identifying the modification of single amino acids.