An aerated greenhouse ecosystem, often referred to as a Living Machine®, is a technology for biological wastewater treatment within a greenhouse structure that uses plants with their roots submerged in the wastewater. This system has a small footprint relative to traditional onsite wastewater treatment systems and constructed wetland, can treat high-strength wastewater, and can provide a high level of treatment to allow for reuse for purposes such as irrigation, toilet flushing, and landscape irrigation. Synthetic and actual craft beverage wastewaters (wastewater from wineries, breweries, and cideries) were examined for their treatability in bench-scale greenhouse ecosystems. The tested wastewater was high strength with chemical oxygen demands (COD) concentrations of 1120 to 15,000 mg/L, total nitrogen (TN) concentrations of 3 to 45 mg/L, and total phosphorus (TP) concentrations of 2.3 to 90 mg/L. The COD, TN, and TP concentrations after treatment ranged from below 125 to 560 mg/L, 1.5 to 15 mg/L, and below 0.25 to 7.8 mg/L, respectively. The results confirm the ability of the aerated greenhouse ecosystem to be a viable treatment system for craft beverage wastewater and it is estimated to require 54 and 26% lower hydraulic retention time than an aerobic lagoon and a low temperature, constructed wetland, respectively, the types of systems that would likely be used for this type of wastewater for onsite locations.