The comparative transcriptome and proteome analysis of the fetal liver (10.5 weeks of gestation) and adult liver was carried out. Data on differential gene expression were obtained using two-color fluorescent probe competitive hybridization of fluorescently labeled cRNA and Agilent’s whole human genome microarrays. Protein profiles were obtained by means of two dimensional gel electrophoresis (2D-GE) of cell extracts within the range of pI from 3 to 10. Proteins isolated from gels were identified by MALDI-TOF mass spectrometry. The list of identified proteins was then compared with the list of genes preferentially expressed in fetal liver. The research object, fetal liver, is a unique organ because it combines both hepatic and hematopoietic tissues and during embryogenesis liver changes its main functional activity from hematopoietic (at early stages of development) towards metabolic functions (including detoxification and secretion of various serum proteins). Data obtained show that transcriptome analysis adequately reflects the main hepatic function during early stages of embryogenesis. Hemoglobins of both embryonic and adult types were identified. Results of proteomic analysis were basically confirmed during mRNA analysis, however, some protein products of highly expressed genes were not detected during 2D-GE.