Adult Habitat Research Articles

Giving‐up densities and ideal pre‐emptive patch use in a predatory benthic stream fish

Summary1. We used observational and experimental field studies together with an individual‐based simulation model to demonstrate that behaviours of mottled sculpin (Cottus bairdi) were broadly consistent with the expectations of Giving‐Up Density theory and an Ideal Pre‐emptive Distribution habitat selection model.2. Specifically we found that: (i) adult mottled sculpin established territories within patches characterised by significantly higher prey densities and prey renewal rates than patches occupied by juveniles or randomly selected patches; (ii) patches abandoned by adult sculpin possessed significantly lower prey densities than newly occupied patches, although this was not true for juveniles; (iii) the observed giving‐up density (GUD) for adult sculpin (i.e. average prey density in patches recently abandoned) increased linearly with increasing fish size up to the average prey density measured in randomly selected patches (i.e. 350 prey items per 0.1 m2) and decreased with increasing sculpin density and (iv) juveniles rapidly shifted their distribution towards the highest quality patches following removal of competitively dominant adult sculpin.3. These results provide the first evidence of the applicability of GUD theory to a stream‐dwelling organism, and they elucidate the underlying factors influencing juvenile and adult sculpin habitat selection and movement behaviours. Furthermore, optimal patch use, ideal pre‐emptive habitat selection and juvenile ‘floating’ provide behavioural mechanisms linking environmental heterogeneity in the stream benthos to density‐dependent regulation of mottled sculpin populations in this system.

Use of stream mouth habitats byCottus perifretumandLeuciscus cephalusalong the River Meuse (the Netherlands)

Abstract. Size-frequency data were collected for two rheophilic fish species, Cottus perifretum and Leuciscus cephalus, at the confluences of 18 lowland tributaries along the regulated River Meuse (the Netherlands) between May 2004 and April 2005. Cottus perifretum is a resident species, using these stream mouth habitats throughout its entire life: i.e. as a spawning, nursery and adult habitat. Leuciscus cephalus is a transient species that uses these stream mouth habitats only as a temporary 0+ juvenile habitat during fall and early winter. This study suggests that the stream mouth habitats along the River Meuse fulfil different ecological functions for C. perifretum and L. cephalus.

Microchemical variation in juvenile Solea solea otoliths as a powerful tool for studying connectivity in the North Sea

Estimating connectivity between juvenile and adult fish habitats can provide an important contribution to effective fisheries management, through a better understanding of population resilience to harvesting pressure. Indirect methods for quantifying connectivity, such as geochemical or genetic techniques, allow us to assign adults from various sampling regions to their natal location, provided that natal origin data can be defined. The elemental composition of otoliths from juvenile sole Solea solea collected at 4 sampling locations in the Southern Bight of the North Sea was measured using laser-abla- tion inductively-coupled plasma mass spectrometry (LA-ICPMS), to determine elemental fingerprints indicative of distinct nursery grounds. Significant differences in elemental composition were detected among the 4 locations, with Na, Sr, Ba, Mn and Rb concentrations varying the most between groups. A discriminant model resulted in high assignment proportions of the juvenile fish to their respective nursery grounds with a total jackknife reclassification success of 88%. Even though some interannual variability in otolith chemistry was observed in juveniles from the Scheldt estuary, spatial patterns seemed to dominate. Our results constitute a firm basis for future investigations on nursery area contri- butions and quality, adult dispersal history and applications of population traceability.

Molting of megalopae of the Asian shore crab Hemigrapsus sanguineus in intertidal habitats of Northeastern North America

Planktonic larvae of many benthic taxa settle and metamorphose in response to certain habitat cues. Although laboratory investigations of the importance of potential cues are numerous, field experiments are less common. We modified a field caging technique first developed for analysis of molting specificity of fiddler crab megalopae to test potential habitat cues affecting molting of megalopae of the non-native Asian shore crab Hemigrapsus sanguineus (de Haan). Potential cues consisted of waterborne substances from 2 potential habitats (cobble beach and salt marsh), and the material used to construct experimental cages. Experiments were conducted in 2002, 2003, and 2004 in Massachusetts and New York (USA). Megalopae (4 or 5 d post molt) were placed in either nylon mesh (500 μm) cages open to flooding seawater or transparent glass jars containing filtered seawater. Cages and jars were placed at identical intertidal heights at the field sites and retrieved 3 or 4 d later. The proportion of megalopae molting to the first crab stage was determined after the period of field exposure and for 2 d thereafter. More megalopae molted in cages than jars placed in the adult habitat (cobble beach) and in a marsh without adults. The cage mesh had little effect on molting response. We conclude that waterborne cues stimulate molting of H. sanguineus megalopae, and that cues are present in both the adult habitat and marsh. Molting of H. sanguineus megalopae is substantially less habitat-specific than molting of native fiddler crab megalopae.

The world's richest tadpole communities show functional redundancy and low functional diversity: ecological data on Madagascar's stream-dwelling amphibian larvae

BackgroundFunctional diversity illustrates the range of ecological functions in a community. It allows revealing the appearance of functional redundancy in communities and processes of community assembly. Functional redundancy illustrates the overlap in ecological functions of community members which may be an indicator of community resilience. We evaluated patterns of species richness, functional diversity and functional redundancy on tadpole communities in rainforest streams in Madagascar. This habitat harbours the world's most species-rich stream tadpole communities which are due to their occurrence in primary habitat of particular interest for functional diversity studies.ResultsSpecies richness of tadpole communities is largely determined by characteristics of the larval habitat (stream structure), not by adult habitat (forest structure). Species richness is positively correlated with a size-velocity gradient of the streams, i.e. communities follow a classical species-area relationship. While widely observed for other taxa, this is an unusual pattern for anuran larvae which usually is expected to be hump-shaped. Along the species richness gradient, we quantified functional diversity of all communities considering the similarity and dissimilarity of species in 18 traits related to habitat use and foraging. Especially species-rich communities were characterised by an overlap of species function, i.e. by functional redundancy. By comparing the functional diversity of the observed communities with functional diversity of random assemblages, we found no differences at low species richness level, whereas observed species-rich communities have lower functional diversity than respective random assemblages.ConclusionsWe found functional redundancy being a feature of communities also in primary habitat, what has not been shown before using such a continuous measure. The observed species richness dependent pattern of low functional diversity indicates that communities with low species richness accumulate functional traits randomly, whereas species in species-rich communities are more similar to each other than predicted by random assemblages and therefore exhibit an accumulation of stream-specific functional traits. Beyond a certain species richness level, therefore, stream-specific environmental filters exert influence whereas interspecific competition between species does not influence trait assemblage at any species richness level.

Habitat selection at settlement endures in recruitment time series

Metamorphosis from a pelagic to a benthic stage is a critical transition in the life cycle of sessile marine invertebrates. The barnacle Semibalanus balanoides attaches permanently during set- tlement, and once attached, its gross location in the adult habitat is fixed. The partitioning of benthic habitat among barnacles in a recruit cohort is often mediated by settlement timing because early set- tlement preempts later settlement. We found that barnacles that settled earlier had a higher chance of survival to reproductive age. Additionally, there was a marked preference for some settlement locations over others as indicated by the order that different quadrats were occupied. Location of set- tlement resolved on a daily timescale over 34 d within 1 site had an enduring influence on which indi- viduals survived to adulthood up to 12 mo later. Furthermore, adult density from a recruit cohort was highly correlated with the timing of settlement. Therefore, habitat selection behavior at settlement may account for a large degree of variability in recruit survival through adulthood in sessile marine invertebrates.

Conservation planning for connectivity across marine, freshwater, and terrestrial realms

Conservation plans are usually developed for regions that encompass only one environmental realm (terrestrial, freshwater or marine) because of logistical, institutional and political constraints. This is inadequate because these realms often interact through processes that form, utilize and maintain interfaces or connections, which are essential for the persistence of some species and ecosystem functions. We present a conceptual framework for systematic conservation prioritization that explicitly accounts for the connectivity between the terrestrial, marine, and freshwater realms. We propose a classification of this connectivity that encompasses: (1) narrow interfaces, such as riparian strips; (2) broad interfaces, such as estuaries; (3) constrained connections, such as corridors of native vegetation used by amphibians to move between natal ponds and adult habitat; and (4) diffuse connections, such as the movements of animals between breeding and feeding habitats. We use this taxonomy of inter-realm connectivity to describe existing and new spatial conservation prioritization techniques that aim to promote the persistence of processes that operate between realms.

Nearshore larval retention in a region of strong upwelling and recruitment limitation

The ability of miniscule larvae to control their fate and replenish populations in dynamic marine environments has been a long-running topic of debate of central importance for managing resources and understanding the ecology and evolution of life in the sea. Larvae are considered to be highly susceptible to offshore transport in productive upwelling regions, thereby increasing dispersal, limiting onshore recruitment, and reducing the intensity of community interactions. We show that 45 species of nearshore crustaceans were not transported far offshore in a recruitment-limited region characterized by strong upwelling. To the contrary, 92% of these larvae remained within 6 km from shore in high densities throughout development along two transects sampled four times during the peak upwelling season. Larvae of most species remained nearshore by remaining below a shallow Ekman layer of seaward-flowing surface waters throughout development. Larvae of other species migrated farther offshore by occurring closer to the surface early in development. Postlarvae evidently returned to nearshore adult habitats either by descending to shoreward-flowing upwelled waters or rising to the sea surface where they can be transported shoreward by wind relaxation events or internal waves. Thus wind-driven offshore transport should not limit recruitment, even in strong upwelling regions, and larvae are more likely to recruit closer to natal populations than is widely believed. This study poses a new challenge to determine the true cause and extent of recruitment limitation for a more diverse array of species along upwelling coasts, and thus to further advance our understanding of the connectivity, dynamics, and structure of coastal populations.

What limits the spread of two congeneric butterfly species after their reintroduction: quality or spatial arrangement of habitat?

AbstractPopulation growth and spread of recently reintroduced species is crucial for the success of their reintroduction. We analysed what limits the spread of two congeneric butterfly species Maculinea teleius and Maculinea nausithous, over 10 years following their reintroduction. During this time, their distributions appeared to be limited to a few sites although it was thought that more suitable habitats were available. Thus, we question, does the quality or the spatial arrangement of their habitat limit their spread? Although adult individuals of both species can select high‐quality plots, we show that selection of suitable plots in the area of reintroduction is spatially constrained. A low colonization probability of unoccupied distant plots of high quality was found for both species. The abandonment of occupied plots in Ma. teleius was also found to be dependent on the distance to occupied plots. We conclude that the spatial distribution of the two species during the 10 years following reintroduction was limited by the spatial arrangement of their habitat, rather than by the availability of high‐quality plots. The spatial constraints in movement can explain observed source–sink structures when female butterflies deposit their eggs on low‐quality plots. We conclude that although these species have very similar life histories, they require different approaches to their conservation due to subtle differences in adult habitat use and movement. Conservation of Ma. teleius should concentrate on improving local habitat quality, whereas conservation of Ma. nausithous is predicted to be more effective by creating a spatial network of suitable habitat plots, such as along road verges.

Complex vertical migration of larvae of the ghost shrimp, Nihonotrypaea harmandi, in inner shelf waters of western Kyushu, Japan

The position of meroplanktonic larvae in the water column with depth-dependent current velocities determines horizontal transport trajectories. For those larvae occurring in inner shelf waters, little is known about how combined diel and tidally-synchronized vertical migration patterns shift ontogenetically. The vertical migration of larvae of Nihonotrypaea harmandi (Decapoda: Thalassinidea: Callianassidae) was investigated in mesotidal, inner shelf waters of western Kyushu, Japan in July–August 2006. The larval sampling at seven depth layers down to 60 m was conducted every 3 h for 36 h in a 68.5-m deep area 10 km off a major coastal adult habitat. Within a 61–65-m deep area 5–7.5 km off the adult habitat, water temperature, salinity, chlorophyll a concentration, and photon flux density were measured, and water currents there were characterized from harmonic analysis of current meter data collected in 2008. The water column was stratified, with pycnocline, chlorophyll a concentration maximum, and 2% of photon flux density at 2 m, recorded at around 22–24 m. The stratified residual currents were detected in their north component, directed offshore and onshore in the upper and lower mixed layers, respectively. More than 87% of larvae occurred between 20 m and 60 m, producing a net onshore transport of approximately 1.3 km d −1. At the sunset flooding tide, all zoeal-stage larvae ascended, which could further promote retention (1.4-km potential onshore transport in 3 h). The actual onshore transport of larvae was detected by observing their occurrence pattern in a shallow embayment area with the adult habitat for 24 h in October 1994. However, ontogenetic differences in the vertical migration pattern in inner shelf waters were also apparent, with the maximum mean positions of zoeae deepening with increasing stages. Zoeae I and II performed a reverse diel migration, with their minimum and maximum depths being reached around noon and midnight, respectively. Zoeae IV and V descended continuously. Zoeae III had behaviors that were intermediate to those of the earlier- and later-stage zoeae. Postlarvae underwent a normal diel migration (nocturnal ascent) regardless of tides, with the deepest position (below 60 m and/or on the bottom) during the day. These findings give a new perspective towards how complex vertical migration patterns in meroplanktonic larvae enable their retention in inner shelf waters before the final entry of postlarvae into their natal populations.

How climate warming impacts the distribution and abundance of two small flatfish species in the North Sea

Climate change, specifically temperature, affects the distribution and densities of species in marine and terrestrial ecosystems. Here, we looked at the effect of temperature during winter and spawning period on latitudinal range shifts and changes in abundance of two non-commercial North Sea fish species, solenette ( Buglossidium luteum) and scaldfish ( Arnoglossus laterna). Both species have increased in abundance and moved to the north since the late 1980s, coinciding with a series of mild winters. In 1996, following a very cold winter, the abundance of both species temporarily decreased as they retracted to the south. The shift in temperature affected adult habitat conditions, allowing them to immigrate into new areas where they subsequently reproduced successfully. We can conclude this because recruitment improved following the increase in abundance. The recruitment relates significantly to the higher adult stock and higher temperatures. The predictions of higher average temperatures and milder winters in the North Sea make it likely that these species will increase further in abundance and move northward. The observed increase in abundance of these small flatfish species will affect the North Sea food web and therefore commercial species, e.g. plaice, by predation on juveniles and competition for benthic food resources.

Induction of metamorphosis in the Asian shore crab Hemigrapsus sanguineus: Characterization of the cue associated with biofilm from adult habitat

Recruitment of crabs to nursery habitat requires settlement of the megalopal stage on suitable substratum followed by metamorphosis into the first juvenile stage. Reducing the time to metamorphosis may result in higher recruitment and survival. Previous work has shown that metamorphosis of the Asian shore crab is accelerated by cues from three different sources: (a) water-soluble exudate produced by conspecific adult crabs; (b) biofilm covering rocks in natural habitat for this species; and (c) abiotic rock from natural habitat. The objective of the present investigation was to characterize the metamorphic cue associated with biofilm from rocky intertidal habitat and to compare the three metamorphic cues (exudate from conspecific adults, biofilm from rocky intertidal, and texture of substratum) that have been identified for H. sanguineus. Results of our study show that megalopae of the Asian shore crab respond strongly to biofilm associated with rocky intertidal habitat that has developed for at least 8 days. We also found that megalopae respond to textured rock surfaces from natural habitat, even when those surfaces had been rendered abiotic. The cue remains active after the biofilm has been exposed to − 20 ºC for 12 h, but is de-activated by a few minutes exposure to 100 °C. Moreover, the biofilm cue appears to work in synergy with cues from other sources, but requires actual contact with the biofilm. Our findings show that addition of biofilm to an abiotic textured rock surface significantly decreases mean time to metamorphosis, and simultaneous exposure of megalopae to biofilm-covered rock and to exudate from adult H. sanguineus decreases mean time to metamorphosis even further. The response of this species to multiple cues—and particularly to biofilm in the absence of adult conspecifics—provides a clear advantage in the colonization of virgin habitat and helps explain the very rapid spread of this invasive species along the majority of the east coast of the United States in only two decades.

Home range, residency and movements of Diplodus sargus and Diplodus vulgaris in a coastal lagoon: Connectivity between nursery and adult habitats

Acoustic telemetry and standard tag-recapture were used to determine the home range and residency of juveniles and sub-adults of Diplodus sargus and Diplodus vulgaris in the Ria Formosa (Portugal) coastal lagoon. Maximum time between recaptures for the standard tag-recapture method was 128 days for D. sargus and 30 days for D. vulgaris. The majority of the fish were recaptured in the vicinity of the tagging location. Fish tagged with acoustic transmitters had a maximum period of time between first and last detections of 62 days for D. sargus and 260 days for D. vulgaris. Minimum convex polygons areas ranged between 148 024 m 2 and 525 930 m 2 for D. sargus and between 23 786 m 2 and 42 134 m 2 for D. vulgaris. Both species presented a high residency index between first and last detections. Two D. sargus tagged with acoustic tags were recaptured by fishermen outside the coastal lagoon at distances of 12 km and 90 km from the tagging position, providing evidence that this species leaves the Ria Formosa during the winter time for the adjacent coastal waters. The results of this study reinforce the importance of Ria Formosa as a nursery for D. sargus and D. vulgaris in the south coast of Portugal.

Phylogeography of the diamond turbot (Hypsopsetta guttulata) across the Baja California Peninsula

We compared morphology and sequenced nuclear and mitochondrial genes from 11 populations of a previously genetically unstudied “Baja California disjunct” species, the diamond turbot (Hypsopsetta guttulata). This species exhibits very limited adult movement and restriction to soft-bottom habitats but has a moderately long pelagic larval duration. Therefore, if pelagic larval duration is correlated with gene flow between Gulf of California and Pacific populations, we expect a reduced level of genetic and morphological differentiation. However, if adult habitat and ecology have more effect on gene flow, we expect the populations in the two bodies of water to be more highly differentiated. We used logistic regression to compare morphological features and phylogenetic and population genetic analyses to compare nucleotide sequence data. Gulf of California H. guttulata are different from Pacific populations in morphology and both mitochondrial and nuclear gene sequences. MtDNA shows reciprocal monophyly, and nuclear sequences from the Gulf of California formed a monophyletic group. Population genetic analyses also suggest further population subdivision within the Pacific and within the Gulf of California. We argue that adult ecology has a significant effect on migration rates among populations in the Pacific Ocean and the Gulf of California.

The effects of distance from coral reefs on seagrass nursery use by 5 emperor fishes at the southern Ryukyu Islands, Japan

Whilst the importance of seagrass beds as nurseries for coral reef fishes has been clearly recognized, the vast majority of early studies on fish nursery habitats emphasized the close proximity of the latter to coral reefs. To determine the potential nursery role of isolated seagrass beds, we investigated the degree to which juvenile emperor fishes (Lethrinidae) utilized seagrass beds in the presence/absence of adjacent coral habitats at Ishigaki Island (southern Japan), such fishes being known to use seagrass beds as nurseries. Seagrass beds in close proximity to coral habitats (distance between the two habitats of 50–200 m) had greater densities of lethrinid juveniles than those without adjacent coral habitats (2.5–4 km) for 3 different sites investigated, although a significant difference was obtained only for 1 site. Juveniles of Lethrinus atkinsoni, L. obsoletus, L. harak, and L. nebulosus were observed in seagrass beds with and without adjacent coral habitats, whereas L. ornatus occurred only in the former. Overall, most lethrinid juveniles utilize seagrass beds irrespective of the presence of adjacent adult coral habitat, suggesting that both types of seagrass beds would contribute to lethrinid adult populations. Therefore, management efforts for lethrinid populations should be applied not only to contiguous coral-seagrass habitat systems but also to isolated habitats.

Marine dispersal determines the genetic population structure of migratory stream fauna of Puerto Rico: evidence for island-scale population recovery processes

Various components of island stream faunas, including caridean shrimps, fish, and gastropods, undertake obligate amphidromous migration, whereby larvae are released in upstream freshwater reaches, drift downstream to estuaries or marine waters, then migrate upstream as postlarvae to freshwater adult habitats. Longitudinal migration from estuaries to headwaters is well documented for many amphidromous species, but the degree of among-river marine dispersal is poorly known for most species. We need better understanding of the potential for marine dispersal in population processes of amphidromous species, particularly recolonization and population recovery in impacted lotic systems, such as those on Puerto Rico, because some theories of dispersal for species with marine larvae predict high rates of self-recruitment. We tested population genetic predictions for widespread marine larval dispersal and self-recruitment to the natal river for 11 amphidromous species, including shrimps, fish, and a gastropod, in Puerto Rico. Population genetic analysis of mitochondrial DNA data showed high rates of gene flow among rivers and indicated that marine dispersal determines the population genetic structure of all 11 species. Difficulty in recruiting to oceanic currents promotes closed population structures in some marine species, but larvae of amphidromous species entrained in downstream river flow might be delivered more readily to ocean currents. Population recovery processes occurred at the island scale rather than at the river scale, but further studies are needed to identify whether population recovery processes are likely at larger spatial scales (e.g., among islands). River management strategies should maintain environmental flows that allow larval export, maintain longitudinal dispersal pathways over dam spillways and via subterranean passages, and maintain open and healthy estuaries.

Simulating larval dispersal processes for abalone using a coupled particle-tracking and hydrodynamic model: implications for refugium design

A coupled particle-tracking and hydrodynamic model, into which observed current data were assimilated, was used to simulate larval dispersal of large abalone (Haliotis discus discus, H. gigan- tea, and H. madaka) in Sagami Bay, Japan. The aims of this study were to (1) clarify larval dispersal pro- cesses and settlement sites, and (2) evaluate the existing harvest refugium and estimate the suitability of other areas for larval sources, using this model. In the larval dispersal simulations, particles were re- leased at the time of hatching, which was calculated from the estimated time of fertilization/potential spawning and based upon the water temperature. The results of larval dispersal simulations indicate 2 different dispersal patterns: (1) transport toward the coast after dispersal offshore, and (2) gradual dis- persal offshore. The refugium was compared with 3 hypothetical reproductive sources located 1 km north, west, and south of the refugium. During settlement competency, transport success (transport to the area at the depth of adult habitat: ≤ 30 m) of particles released at the refugium was highest (27 to 75%), and suggested that the location of this refugium was more suitable for a larval source than those of the hypothetical reproductive sources. Multiple potential larval settlement sites were identified. These results have important implications for refugium design at the study site. The method and model devel- oped in the present study could be used for evaluating harvest refugia and for identifying effective lo- cations for reproductive sources and potential settlement sites.

Demersal fish and habitat associations from visual surveys on the central California shelf

In 2004, we surveyed demersal fishes and habitats on the continental shelf off central California (65–110 m depth) using the occupied submersible Delta. Our objectives were to estimate the relative abundance of habitats and to examine demersal fish species composition, diversity, density, and sizes relative to these habitats. A total of 112 transects were completed covering 32 km of seafloor. A higher density of fishes was estimated in boulder and cobble habitats than in mud and brachiopod beds. More than 80% of the fishes were small, measuring 20 cm or less in total length. Species with small maximum size (primarily pygmy rockfish, Sebastes wilsoni, and blackeye gobies, Rhinogobiops nicholsii) accounted for nearly half (49%) of the total number of 12,441 fishes. Most fishes were immature, with only 4 of 20 harvested species having more than 50% of the individuals larger than the size at first maturity. Our study area on the continental shelf may be an ontogenetic transition zone for immature fishes before they move to their adult habitat on the slope. Alternatively, historical fishing pressure may have contributed to the lack of large, mature fishes in the survey area. Understanding the importance of these habitats to fishes at various life stages will improve our ability to assess these deepwater fish stocks and effectively manage these living resources on an ecosystem basis.

Small-scale distribution of fish larvae around the Medes Islands marine protected area (NW Mediterranean)

During the spring and summer of 2003, the small-scale spatial distribution of fish larvae was analysed in and around the Medes Islands marine protected area (MPA). High specific richness was found during both seasons, which is when most coastal fish species spawn in the NW Mediterranean. Despite the small dimensions of the area, well-defined larval fish patterns were found. Larvae from pelagic eggs were located farther from the adult habitat than those from demersal eggs; however, there were exceptions, which highlight the influence of larval behaviour and pelagic larval duration. Inside the reserve, there was both a high diversity index and a high abundance of shorefish larvae in relation to the high abundance of adults and a possible retention of larvae in the MPA. Although there was a great variability both in species composition and abundance between periods, the sampling station assemblages were similar. Factors such as habitat and spawning location of adults, and the role of the MPA seem to determine the stability of the larval distribution patterns in time. The importance of small-scale approaches is highlighted to understand the fish larval spatial distributions.

Ontogenetic niche shifts in the American Alligator establish functional connectivity between aquatic systems

Individual animals undergoing ontogenetic shifts in habitat use may establish a mobile link between discrete ecosystems via movement of energy, nutrients and matter, as well as through impacts on ecosystem and habitat structure. The American Alligator ( Alligator mississippiensis) is a model species for studying ecological implications of ontogenetic niche shifts, because they grow in size by several orders of magnitude, and they play a critical role as both top predators and ecosystem engineers. We used equal trapping effort, radio telemetry and nest surveys to document ontogenetic habitat shifts of alligators between hydrologically isolated, seasonal wetlands and riverine systems. To estimate the degree of functional connectivity between systems, we quantified alligator biomass and nutrient excretion in both systems. Seasonal wetlands provided nesting and nursery sites for adult females and juveniles, which constituted 0.78 g/m 2 biomass and excreted 0.05 g/m 2/yr N, P, Ca, Mg, Na and K in that system. In contrast, the riverine system provided non-nesting habitat for adults and sub-adults of both sexes, totaling 0.18 g/m 2 biomass and excreting 0.01 g/m 2/yr of nutrients. Furthermore, sub-adults and adult females were documented moving across the terrestrial matrix, while adult males spent the duration of the study in the creek. Our results demonstrated that ontogenetic niche shifts in alligators establish connectivity between seasonal wetlands and riverine systems and with the surrounding terrestrial matrix. These findings have implications for the definition of jurisdictional wetlands under the US Supreme Court’s 2001 SWANCC decision and highlight the importance of ecological, as well as hydrological, connectivity.