Supercapacitors are a kind of highly efficient energy-storage device with long cycle life and high power density, however, their specific capacitance is insufficient for further application and development. In this work, a novel composite with one-dimensional (1D) NiCo2O4 nanowire arrays (NiCo2O4-NWA) vertically supported on three-dimensional (3D) nitrogen-doped graphene aerogel (NGA) is designed and facilely realized by hydrothermal reaction and thermal treatment. The NiCo2O4 nanowires, with length of ∼1 μm and diameter of ∼25 nm, display a porous structure and are regularly arranged on both sides of the sheets in nitrogen-doped graphene aerogel. The aerogel-supporting NiCo2O4 nanowires demonstrate a remarkably high specific capacitance of 2742 F g−1 at 1 A g−1, and an outstanding cyclic stability with capacitance retention of 90% even after 10,000 cycles at 80 A g−1. The density functional theory calculation shows the narrow band gap (0.32 eV) and strong electronic interaction and hydroxyl-ion adsorption effect of NiCo2O4 supported on NGA, resulting in superior specific capacitance and energy storage performance. The 3D nitrogen-doped graphene aerogel supporting 1D nanowire arrays represent a promising high-performance electrode material for application in the supercapacitors and other electrochemical energy-conversion and storage equipment.