Asymmetric hydrogenation reaction of dehydro-α-amino acid (i.e., α-amino ester) over cinchonidine (CD) modified Pd catalyst has been studied by an array of in situ infrared spectroscopic methods, including transmission, diffuse reflectance (DR), and attenuated total reflectance (ATR). Transmission FTIR spectra probed the hydrogenation reaction process, revealed OH–O and NH–N hydrogen bonding interactions between the adsorbed CD and during the reaction. DR and ATR spectra of the hydrogenation reaction under different conditions, which are consistent with but slightly different from the transmission spectra, evidenced the successful hydrogenation of the compound. The incorporation of DR and microfluidics flow-through design allowed us to investigate the adsorption of CD on the Pd surface efficiently. The results revealed that the N-bonded CD on Pd surface in a tilted configuration had increased abundance on the Pd surface with high coverage. These valuable insights provided an image of the reaction pathway ...