ABSTRACT Understanding the impact of farmland size adjustment on net crop carbon emissions (NCEs) is crucial for both effective farmland management and sustainable development, which are essential topics in agri-environmental science. However, studies exploring the relationship between farmland size and NCEs remain limited, particularly in developing countries with scarce farmland, such as China. To fill this gap, this paper discusses farmland size’s impact on NCEs using a threshold model combining endogenous switching regression (ESR) and two-stage least squares (2SLS) with survey data from 2600 Chinese farmers. The results show that increasing farmland size curbs the scale and intensity of NCEs. However, their relationship follows a triple threshold effect, where substantial NCEs mitigation occurs only when the per-household farmland size exceeds specific thresholds of 5.1, 15.2, and 46.7 ha. Expanding farmland size can also indirectly reduce NCEs by promoting green agricultural technologies (GAT) adoption. Moreover, lowering farmers’ time preferences and enhancing technical training can increase the positive effect of farmland size expansion on GAT adoption and reduce NCEs further. However, the emission reduction effects vary by GAT type. Soil testing and fertilization technology, pest control technology, and water-saving irrigation technology reduce NCEs, while the other GAT have insignificant effects. Overall, our study sheds light on the intricate relationships between farmland size, GAT adoption, and NCEs, and provides valuable insights for low-carbon, sustainable agriculture policies. We suggest that policymakers can reduce NCEs and facilitate agriculture’s low-carbon transition by promoting moderate farmland size expansion and locally adapted GAT.