Human influence along the coastline is a significant threat to biodiversity and includes the alteration or replacement of natural habitat with artificial structures. Infrastructure such as docks and marinas are common throughout the world and typically have negative impacts on coastal flora and fauna. Impacts include the reduction of native biodiversity, the increase of introduced species, and the alteration of biotic interactions (e.g., predation). Many studies examine human disturbance on biotic interactions within a single habitat (i.e., docks or marinas) but what lacks are paired comparisons using standardized methods of biotic interactions between artificial and nearby natural habitats. In the current study, benthic fouling communities were allowed to develop, with and without predator access, in artificial and seagrass habitats. Cages were used to reduce predation and removed to expose communities to fish predators. Prior to exposure, communities were either left at their original site or transplanted to the opposite habitat and changes in the percent cover of species found were compared. Initially, community composition differed between habitats and when predation was reduced (caged vs. open). When developed communities within cages were exposed to predators, predation was strong but only in artificial habitats and regardless of where communities originated. In contrast, little predation occurred at seagrass sites on previously caged communities developed within seagrass beds or that were transplanted from artificial habitat. Taken together, results indicate that the strength of biotic interactions can differ depending on habitat, leading to changes in community composition. With the continuous expansion of artificial structures world-wide, it is becoming increasingly important to understand not only their effects on biotic interactions and biodiversity but also how these effects extend and compare to adjacent natural habitats.