Adenylyl Sulfate Research Articles

Adenylyl-Sulfate Kinase (Met14)-Dependent Cysteine and Methionine Biosynthesis Pathways Contribute Distinctively to Pathobiological Processes in Cryptococcus neoformans.

Blocking of nutrient uptake and amino acid biosynthesis are considered potential targets for next-generation antifungal drugs against pathogenic fungi, including Cryptococcus neoformans. In this regard, the sulfate assimilation pathway is particularly attractive, as it is only present in eukaryotes such as plants and fungi, yet not in mammals. Here, we demonstrated that the adenylyl sulfate kinase (Met14) in the sulfate assimilation pathway is not essential yet is required for the viability of C. neoformans due to its involvement in biosynthesis of two sulfur-containing amino acids, cysteine and methionine. Met14-dependent cysteine and methionine biosynthesis was found to significantly contribute to a diverse range of pathobiological processes in C. neoformans. Met14-dependent cysteine rather than methionine biosynthesis was also found to play pivotal roles in cell growth and tolerance to environmental stresses and antifungal drugs. In contrast, the Met14-dependent methionine biosynthesis was found to be more important than cysteine biosynthesis for the production of major cryptococcal virulence factors of melanin pigments and polysaccharide capsules. Finally, we also found that despite its attenuated virulence in an insect model, Galleria mellonella, the met14Δ mutant yielded no difference in virulence in a murine model of systemic cryptococcosis. Hence, clinical inhibition of Met14-dependent amino acid biosynthetic pathways may not be advantageous for the treatment of systemic cryptococcosis. IMPORTANCE Current antifungal drugs have several limitations, such as drug resistance, severe side effects, and a narrow spectrum. Therefore, novel antifungal targets are urgently needed. To this end, fungal sulfur amino acid biosynthetic pathways are considered potential targets for development of new antifungal agents. Here, we demonstrated that Met14 in the sulfate assimilation pathway promotes growth, stress response, and virulence factor production in C. neoformans via synthesis of sulfur-containing amino acids methionine and cysteine. Met14-dependent cysteine rather than methionine synthesis was found to be critical for growth and stress responses, whereas Met14-dependent methionine synthesis was more important for the production of antiphagocytic capsules and antioxidant melanin in C. neoformans. Surprisingly, deletion of the MET14 gene was found to attenuate cryptococcal virulence in an insect model, yet not in a murine model. Collectively, our results showed that Met14-dependent cysteine and methionine biosynthesis play roles that are distinct from each other in C. neoformans. Moreover, Met14 is unlikely to be a suitable anticryptococcal drug target.

Potential Inhibitor of Adenylyl Sulfate Reductase Isolated from Desulfovibrio desulfuricans with PU/PU-Ag to Control Pitting Corrosion of Oil Tanks and Pipelines

Background and Aim: This study aims to alleviate the microbiologically affected corrosion that occurred by sulfate-reducing bacteria (SRB) through synthesizing a bio-based polyurethane polymer and its nanocomposite coating, silver nanoparticles (PU-Ag). Moreover, it will also evaluate the effect of PU alone and PU-Ag as inhibitors for adenylyl sulfate reductase (APS), the main enzyme for sulfate reduction. Methods: In this study, the PU was prepared from vegetable soybean oil, and the silver nanoparticles (Ag-NPs) with a concentration of 1% were coated to the PU forming a nanocomposite. The PU and the PU-Ag were characterized and evaluated as inhibitors of the APS reductase enzyme. Results: The results obtained from FTIR, UV, DLS, TEM, and XRD confirmed the preparation structure of the PU and PU-Ag. Furthermore, the PU/PU-Ag competitively inhibited the APS reductase with an inhibition constant equal to 35.7 and 11 mg, respectively. These indicated the exerted inhibitory effect of PU/PU-Ag upon the activity of the APS reductase enzyme. Conclusion: The APS reductase enzyme produced by SRB, which is recorded as a big problem in the oil and gas industry such as pitting corrosion of tanks and pipelines, could be inhibited by PU and PU-Ag.

Freezing in the presence of nitrite pretreatment enhances hydrogen production from dark fermentation of waste activated sludge

Due to the poor biodegradability of released organics and the rapid consumption of hydrogen, hydrogen production from the untreated waste activated sludge (WAS) and/or inocula is still limited. In this study, it was found that the dark fermentative hydrogen production was largely enhanced from WAS pretreated by freezing in the presence of nitrite. With an increase of nitrite addition from 100 to 400 mg NO2−-N/L during freezing pretreatment (−5 °C for 4 h), the maximal hydrogen yield increased from 7.96 to 19.40 mL/g VS (volatile solids), which was 5.5–13.4 times of that in the control (without freezing and nitrite addition). Mechanism explorations revealed that the proposed pretreatment not only accelerated the disintegration of sludge but also promoted the proportion of biodegradable organics released, thereby provided more bio-available substrates for subsequent hydrogen production. Proposed pretreatment severely suppressed the sludge microorganisms responding to homoacetogenesis (−32.1%), methanogenesis (−58.4%), and sulfate-reducing process (−51.5%), inhibited the consumption of hydrogen. Moreover, there was more acetic and butyric (76% versus 57.5%) but less propionic acid (22.6% versus 13.4%) in this pretreated fermenter, which was in correspondence with the theory of fermentation type affecting hydrogen production. Long-term fermentation experiments indicated that the proposed pretreatment boosted the [FeFe]-hydrogenase activities while suppressed the activities of carbon monoxide dehydrogenase, coenzyme F420, and adenylyl sulfate reductase.

Nitrate addition improves hydrogen production from acidic fermentation of waste activated sludge

In this work, a low-cost alternative method (i.e., adding nitrate into WAS) to significantly enhance hydrogen production was reported. Experimental results showed that with an increase of nitrate addition from 0 to 362 mg/L, the maximal hydrogen production from acidic (pH 5.5) fermentation of WAS obviously increased from 12.6 ± 0.5 to 19.3 ± 0.9 mL per gram volatile suspended solids (VSS). The mechanism investigations illustrated more substrates were provided for subsequent hydrogen production. Although the nitrate added inhibited all the biological processes, its inhibition to the hydrogen consumption processes was much severer than that to the hydrogen production processes. The enzyme analyses on the long-term semi-continuous fermenters showed that the nitrate addition slightly inhibited the relative activities of protease, butyrate kinase, acetate kinase, CoA-transferase, and [FeFe] hydrogenase but largely suppressed the relative activities of coenzyme F420, carbon monoxide dehydrogenase, and adenylyl sulfate reductase.

Shotgun Metagenomics Reveals the Benthic Microbial Community Response to Plastic and Bioplastic in a Coastal Marine Environment.

Plastic is incredibly abundant in marine environments but little is known about its effects on benthic microbiota and biogeochemical cycling. This study reports the shotgun metagenomic sequencing of biofilms fouling plastic and bioplastic microcosms staged at the sediment–water interface of a coastal lagoon. Community composition analysis revealed that plastic biofilms were indistinguishable in comparison to a ceramic biofilm control. By contrast, bioplastic biofilms were distinct and dominated by sulfate-reducing microorganisms (SRM). Analysis of bioplastic gene pools revealed the enrichment of esterases, depolymerases, adenylyl sulfate reductases (aprBA), and dissimilatory sulfite reductases (dsrAB). The nearly 20-fold enrichment of a phylogenetically diverse polyhydroxybutyrate (PHB) depolymerase suggests this gene was distributed across a mixed microbial assemblage. The metagenomic reconstruction of genomes identified novel species of Desulfovibrio, Desulfobacteraceae, and Desulfobulbaceae among the abundant SRM, and these genomes contained genes integral to both bioplastic degradation and sulfate reduction. Findings indicate that bioplastic promoted a rapid and significant shift in benthic microbial diversity and gene pools, selecting for microbes that participate in bioplastic degradation and sulfate reduction. If plastic pollution is traded for bioplastic pollution and sedimentary inputs are large, the microbial response could unintentionally affect benthic biogeochemical activities through the stimulation of sulfate reducers.

Free ammonia enhances dark fermentative hydrogen production from waste activated sludge

Ammonium and/or free ammonia (the unionized form of ammonium) are generally thought to inhibit the activities of microbes involved in anaerobic digestion of waste activated sludge. It was found in this work, however, that the presence of ammonium (NH4+-N) largely enhanced dark fermentative hydrogen production from alkaline pretreated-sludge. With the increase of initial NH4+-N level from 36 to 266 mg/L, the maximal hydrogen production from alkaline (pH 9.5) pretreated-sludge increased from 7.3 to 15.6 mL per gram volatile suspended solids (VSS) under the standard condition. Further increase of NH4+-N to 308 mg/L caused a slight decrease of hydrogen yield (15.0 mL/g VSS). Experimental results demonstrated that free ammonia instead of NH4+-N was the true contributor to the enhancement of hydrogen production. It was found that the presence of free ammonia facilitated the releases of both extracellular and intracellular constituents, which thereby provided more substrates for subsequent hydrogen production. The free ammonia at the tested levels (i.e., 0–444 mg/L) did not affect acetogenesis significantly. Although free ammonia inhibited all other bio-processes, its inhibition to the hydrogen consumption processes (i.e., homoacetogenesis, methanogenesis, and sulfate-reducing process) was much severer than that to the hydrolysis and acidogenesis processes. Further investigations with enzyme analyses showed that free ammonia posed slight impacts on protease, butyrate kinase, acetate kinase, CoA-transferase, and [FeFe] hydrogenase activities but largely suppressed the activities of coenzyme F420, carbon monoxide dehydrogenase, and adenylyl sulfate reductase, which were consistent with the chemical analyses performed above.

Progress of nitrogen-phosphorus bond biosynthesis study of naturally occurring phosphoramidates

Naturally occurring phosphoramidates, which contain nitrogen-phosphorus (N−P) bonds, show high structure similarity with cytoplasmic carboxylates and phosphates. Phosphoramidates exhibit wide bioactivity spectrum attributed to the role as inhibitor of certain necessary enzymes in cell cycle. Three N−P bond biosynthetic pathways, which are respectively catalyzed by MccB, adenylyl sulphate: ammonia adenylyltransferase (APSAT) and Pyruvate phosphate dikinase (PPDK) homologues, are reviewed here. (1) MccB, a homologue of E1 ubiquitin ligase, catalyzed the phosphorylation of the asparagine residue of Microcin C7 precursor peptide. It consumed one molecule of ATP for the cyclization of the asparagine residue to give a succinimide. Then, the succinimidyl nitrogen atom attacked the Pα of a second ATP molecule to create an adenosine monophosphate- N -succinimide moiety. Agrocin 84, dinogunellin and phosmidosine shared identical AMP-NHR structural moiety with Microcin C7. Unfortunately, the biosynthetic gene clusters of dinogunellin and phosmidosine have not been identified yet. Agrocin 84 contains two N-P bonds, the first one linked the amino group of 2,3-dihydroxy-4-methyl-pentanamide with the phosphate group of 3′dAMP, and the second one bridged the amino group of the 3′dAMP purine ring with the phosphate group on the phosphorylated D-glucofuranosyloxy- phosphoryl. Analysis of Agrocin 84 biosynthetic gene cluster showed that agnA is homologous to mccB gene. Based on structural similarity and gene homology, it was proposed that the first N−P bond biosynthetic pathway of agrocin 84 is similar to that of Microcin C7. (2) APSAT catalyzed ammonolysis of adenosine-5′-phosphosulfate to give adenosine- 5′-phosphoramidate (AMP-NH2) and sulfate. AMP-NH2 was discovered from the extracts of Chlorella pyrenoidosa , Dictyostelium discoideum , Euglena gracilis var. bacillaris , spinach, barley and Escherichia coli . This APSAT protein was isolated from Chlorella pyrenoidosa and the biochemical characters were investigated. To eukaryotes, human Fhit (Fragile Histidine Triad) showed adenylyltransferase activity as well. It not only catalyzed the hydrolysis of diadenosine triphosphate (ApppA) to form AMP and ADP, but also catalyzed the ammonolysis of ApppA to form AMP-NH2 and ADP. In the hydrolysis of ApppA to AMP and ADP catalyzed by Fhit, first, ApppA and Mg2+ covalently bound to the 96th histidine residue of Fhit to form Fhit-AMP covalent intermediate and released ADP; then Fhit-AMP was further hydrolyzed to form AMP and Fhit. The Fhit-AMP could also be aminolyzed to give AMP-NH2. A possible mechanism for Fhit-catalysed ammonolysis involving nucleophilic attacks of NH3 to the covalent histidine-bound enzyme- nucleosidyl intermediate. (3) PPDK catalyzed the phosphorylation of pyruvate with an intermediate in which a phosphate group was loaded on the conserved histidine residue of PPDK. PPDK homologues PhtL and AgnD were proposed to catalyze the N-P bonds formation of Phaseolotoxin and Agrocin 84, respectively. The Walsh group of Harvard University have hypothesized that the Phaseolotoxin N-P bond was formed by nucleophilic attack of ornithine free amino to the phosphate group attached to the histidine residue of PhtL. Similarly, it can be assumed that the amino group of 3′dAMP purine ring attacking the phosphate group of AgnD1 (or AgnD2) histidine residue, makes the second N-P bond of Agrocin 84. This is a novel hypothesis of the biosynthesis of the N-P bonds in naturally occurring phosphoramidates, while the detailed enzymatic reactions remain to be studied further.

New Model for Electron Flow for Sulfate Reduction in Desulfovibrio alaskensis G20

To understand the energy conversion activities of the anaerobic sulfate-reducing bacteria, it is necessary to identify the components involved in electron flow. The importance of the abundant type I tetraheme cytochrome c3 (TpIc3) as an electron carrier during sulfate respiration was questioned by the previous isolation of a null mutation in the gene encoding TpIc3, cycA, in Desulfovibrio alaskensis G20. Whereas respiratory growth of the CycA mutant with lactate and sulfate was little affected, growth with pyruvate and sulfate was significantly impaired. We have explored the phenotype of the CycA mutant through physiological tests and transcriptomic and proteomic analyses. Data reported here show that electrons from pyruvate oxidation do not reach adenylyl sulfate reductase, the enzyme catalyzing the first redox reaction during sulfate reduction, in the absence of either CycA or the type I cytochrome c3:menaquinone oxidoreductase transmembrane complex, QrcABCD. In contrast to the wild type, the CycA and QrcA mutants did not grow with H2 or formate and sulfate as the electron acceptor. Transcriptomic and proteomic analyses of the CycA mutant showed that transcripts and enzymes for the pathway from pyruvate to succinate were strongly decreased in the CycA mutant regardless of the growth mode. Neither the CycA nor the QrcA mutant grew on fumarate alone, consistent with the omics results and a redox regulation of gene expression. We conclude that TpIc3 and the Qrc complex are D. alaskensis components essential for the transfer of electrons released in the periplasm to reach the cytoplasmic adenylyl sulfate reductase and present a model that may explain the CycA phenotype through confurcation of electrons.

The Role of Adenylyl Sulfate Reductase to Abiotic Stress in Tomato

The full-length cDNA of LeAPR1 encoded a protein of 461 amino acid residues, which contained homology with phosphoadenosine phosphosulphate reductase (PAPS reductase) in N-terminal and an adenylylsulfate reductase in N-term and C-terminal. Analysis of the deduced amino acid sequence of LeAPR1 revealed that it shares high sequence identity with potato StAPR (96% identity)(Gene bank accession no. CDC44841). We found that multiple copies of LeAPR1 gene are present in the tomato genome through southern blot using genomic DNA was digested with 3 different restriction enzymes. The expression of LeAPR1 was also examined in various organs and its expression was also detected at high levels in roots and stems. Only high amounts of LeAPR1 transcripts were detected at high transcripts in the leaves at time 0, and then reduced as the plant stressed by the NaCl and abscisic acid (ABA). After 24h treatment of NaCl and ABA were showed increasing patterns of LeAPR1 gene. Time course of LeAPR1 gene expression was examined under oxidative stresses from metyl viologen (MV) and hydrogen peroxide (). In the presence of 10 mM and MV, the levels of LeAPR1 transcript in leaves decreased after 1 h, and then increased strongly, peaked at 24 h. Our results indicated that LeAPR1 may play a role function of circadian regulation involved in abiotic stresses signaling pathways.

Properties of the Cysteine Residues and the Iron−Sulfur Cluster of the Assimilatory 5‘-Adenylyl Sulfate Reductase from Enteromorpha intestinalis

The 5'-adenylyl sulfate (APS) reductase from the marine macrophytic green alga Enteromorpha intestinalis uses reduced glutathione as the electron donor for the reduction of APS to 5'-AMP and sulfite. The E. intestinalis enzyme (EiAPR) is composed of a reductase domain and a glutaredoxin-like C-terminal domain. The enzyme contains a single [4Fe-4S] cluster as its sole prosthetic group. Three of the enzyme's eight cysteine residues (Cys166, Cys257, and Cys260) serve as ligands to the iron-sulfur cluster. Site-directed mutagenesis experiments and resonance Raman spectroscopy are consistent with the presence of a cluster in which only three of the four ligands to the cluster irons contributed by the protein are cysteine residues. Site-directed mutagenesis experiments suggest that the thiol group of Cys250, a residue found only in algal APS reductases, is not an absolute requirement for activity. The other four cysteines that do not serve as cluster ligands, all of which are required for activity, are involved in the formation of two redox-active disulfide/dithiol couples. The couple involving Cys342 and Cys345 has an E(m) value at pH 7.0 of -140 mV, and the one involving Cys165 and Cys285 has an E(m) value at pH 7.0 of -290 mV. The C-terminal portion of EiAPR, expressed separately, exhibits the cystine reductase activity characteristic of glutaredoxins. It is proposed that the Cys342-Cys345 disulfide provides the site for entry of electrons from reduced glutathione and that the Cys166-Cys285 disulfide may serve as a structural element that is essential for keeping the enzyme in the catalytically active conformation.

Identification, accumulation, and functional prediction of novel tomato transcripts systemically upregulated after fire damage

Despite the major impacts of fire on plants, responses to fire damage have not been closely studied on the level of gene expression. Here, we present analyses of novel transcripts from tomato (Lycopersicon esculentum cv. Heinz), which are systemically upregulated in leaves after a distant leaf is wounded by flame. Nine cDNA fragments were isolated from a subtractive cDNA library of leaf tissue 1 h after flaming. Using data mining and polymerase chain reaction (PCR), full‐length open‐reading frames were predicted, amplified, and then sequenced. Real‐time (RT)‐PCR using leaf RNA after flaming confirmed the systemic accumulation of 4 and 7 transcripts within 30 and 60 min, respectively, before returning to basal levels within 3 h. During this same time course, proteinase inhibitor I levels gradually increased over 30‐fold in 6 h. Expression analyses also showed that eight of the transcripts are present in unwounded leaf, stem, and root tissues. The predicted proteins include an acyl carrier, adenylyl sulfate reductase, PS II oxygen‐evolving complex protein 3, anion : sodium symporter, chloroplast‐specific ribosomal protein, a histidine triad family protein, and an unknown wound/stress‐related protein. Homologs of several of these proteins have been associated with other types of wound and stress responses. It appears that, within an hour after being damaged by fire, plants systemically upregulate a variety of genes involved with basic cell metabolism and upkeep, in addition to classic defense genes such as proteinase inhibitors.

Effect of Cultivation Conditions on the Growth and Activities of Sulfur Metabolism Enzymes and Carboxylases of Sulfobacillus thermosulfidooxidans subsp. asporogenes Strain 41

The moderately thermophilic acidophilic bacterium Sulfobacillus thermosulfidooxidans subsp. asporogenes strain 41 is capable of utilizing sulfides of gold-arsenic concentrate and elemental sulfur as a source of energy. The growth in the presence of S0 under auto- or mixotrophic conditions was less stable compared with the media containing iron monoxide. The enzymes involved in oxidation of sulfur inorganic compounds--thiosulfate-oxidizing enzyme, tetrathionate hydrolase, rhodonase, adenylyl sulfate reductase, sulfite oxidase, and sulfur oxygenase--were discovered in the cells of Sulfobacillus grown in the mineral medium containing 0.02% yeast extract and either sulfur or iron monoxide and thiosulfate. Cell-free extracts of the cultures grown in the medium with sulfur under auto- or mixotrophic conditions displayed activity of the key enzyme of the Calvin cycle--ribulose bisphosphate carboxylase--and several other enzymes involved in heterotrophic fixation of carbonic acid. Activities of carboxylases depended on the composition of cultivation media.

Sulfur-Metabolizing Enzymes in Thermoacidophilic Bacteria Sulfobacillus sibiricus

Sulfur oxygenase, sulfite oxidase, adenylyl sulfate reductase, rhodanase, sulfur : Fe(III) oxidoreductase, and sulfite : Fe(III) oxidoreductase were found in cells of aerobic thermoacidophilic bacteria Sulfobacillus sibiricus, strains N1 and SSO. Enzyme activity was revealed in the cells grown on medium with elemental sulfur or in the presence of various sulfide minerals and concentrates of sulfide ores. The activity of enzymes of sulfur metabolism depended little on the degree of aeration during bacterial growth.

Ultrastructural, biochemical, and immunological characterization of two populations of the mytilid mussel Bathymodiolus azoricus from the Mid-Atlantic Ridge: evidence for a dual symbiosis

A recently described species of mytilid mussel, Bathymodiolusazoricus Von Cosel et al., 1999, was observed to be the dominant organism at the hydrothermal vents off the Azores, at both the Lucky Strike and Menez Gwen sites. Evidence suggests this species of Bathymodiolus represents yet another example of the intriguing dual symbiosis known in three other species of deep-sea mytilid mussels. Transmission electron micrographs (TEM) show the majority of gill bacteriocytes in mussels sampled from both populations to contain two distinct symbiont morphotypes. One morphotype is characterized by large size (mean diameter, 1.25 µm), coccoid shape, and stacked intracytoplasmic membranes that are consistent with the morphology of type I methanotrophs. The second morphotype is smaller (mean diameter, 0.35 µm) and was observed in coccoid or rod shapes. Immunoblots revealed the presence of ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO) and methanol dehydrogenase (MeDH) in both populations of mussels. Activities of these enzymes, as well as sulfate adenylyl transferase (ATP sulfurylase) and adenylyl sulfate reductase (APS reductase), were detected in gill extracts. The activities measured for the two populations were highly variable, though the population sampled from Lucky Strike showed higher RubisCO activity. Stable carbon isotope values (Lucky Strike, δ13C=–32.6±0.3‰; Menez Gwen, δ13C=–22.8±0.4‰) are in the range of previously reported stable carbon isotope measurements for mytilid mussels hosting a dual symbiosis. Collectively, these results provide evidence for the activity of both sulfur-oxidizing and methane-oxidizing metabolic pathways in B. azoricus. Furthermore, evidence for a greater dependence on methanotrophy in the Menez Gwen mussel population is offered by analysis of cell counts from TEMs. Higher methanotroph numbers, and putatively activity, in this population of mussels are further supported by published geochemical data indicating higher methane concentrations in the vent fluids at Menez Gwen. This finding suggests that environmental conditions may regulate a balance between the physiological activities of different symbiont populations associated with these mussels. The existence of a dual symbiosis could thus confer greater environmental tolerance and increased niche space to the mytilid host in the stochastic hydrothermal vent habitat.

Hint, Fhit, and GalT: function, structure, evolution, and mechanism of three branches of the histidine triad superfamily of nucleotide hydrolases and transferases.

HIT (histidine triad) proteins, named for a motif related to the sequence HphiHphiHphiphi (phi, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides, and contain a approximately 30 kDa domain that is typically either a homodimer of approximately 15 kDa polypeptides with two active-sites or an internally, imperfectly repeated polypeptide that retains a single HIT active site. On the basis of sequence, substrate specificity, structure, evolution, and mechanism, HIT proteins can be classified into the Hint branch, which consists of adenosine 5'-monophosphoramide hydrolases, the Fhit branch, which consists of diadenosine polyphosphate hydrolases, and the GalT branch, which consists of specific nucleoside monophosphate transferases, including galactose-1-phosphate uridylyltransferase, diadenosine tetraphosphate phosphorylase, and adenylyl sulfate:phosphate adenylytransferase. At least one human representative of each branch is lost in human diseases. Aprataxin, a Hint branch hydrolase, is mutated in ataxia-oculomotor apraxia syndrome. Fhit is lost early in the development of many epithelially derived tumors. GalT is deficient in galactosemia. Additionally, ASW is an avian Hint family member that has evolved to have unusual gene expression properties and the complete loss of its nucleotide binding site. The potential roles of ASW and Hint in avian sexual development are discussed elsewhere. Here we review what is known about biological activities of HIT proteins, the structural and biochemical bases for their functions, and propose a new enzyme mechanism for Hint and Fhit that may account for the differences between HIT hydrolases and transferases.

Molecular and Catalytic Properties of Arabidopsis thaliana Adenylyl Sulfate (APS)-Kinase

A cDNA clone (Atakn1) from Arabidopsis thaliana encoding APS-kinase (EC 2.7.1.25) was investigated for structural and catalytic properties of the gene product. Recombinant his10-AtAkn1 formed PAPS at a Vmax of 7.35 U mg−1. The Km for APS was 0.14 μM and for ATP 147 μM. APS caused a severe substrate inhibition (Ki 4.5 μM). The type of inhibition is uncompetitive with respect to MgATP. High ionic strength and reducing thiols stabilized the enzyme activity. Plant APS-kinase is regulated in vitro by the redox charge with thioredoxin as essential activator. Mutagenesis of a serine in S182C and S182F presumed to be involved in the transfer of the phosphoryl group had no effect upon catalytic activity. Using a yeast two-hybrid system with AtAkn1 as bait, an interacting clone was detected from a cDNA library of A. thaliana cv. Columbia that codes for an APS-kinase iso-form (Atakn2). Complementation of APS-kinase-deficient Saccharomyces cerevisiae met14 showed that AtAkn2 is functionally active as APS-kinase. It was immunologically related to AtAkn1 and presumably represents a plastidal iso-form of the plant APS-kinase gene family.

Regulation of the plant-type 5'-adenylyl sulfate reductase by oxidative stress.

5'-Adenylyl sulfate (APS) reductase (EC 1.8.4.9) catalyzes a key reaction in the plant sulfate assimilation pathway leading to the synthesis of cysteine and the antioxidant glutathione. In Arabidopsis thaliana APS reductase is encoded by a family of three genes. In vitro biochemical studies revealed that the enzyme product derived from one of them (APR1) is activated by oxidation, probably through the formation of a disulfide bond. The APR1 enzyme is 45-fold more active when expressed in a trxB strain of Escherichia coli than in a trxB(+) wild type. The enzyme is inactivated in vitro by treatment with disulfide reductants and is reactivated with thiol oxidants. Redox titrations show that the regulation site has a midpoint potential of -330 mV at pH 8.5 and involves a two-electron redox reaction. Exposure of a variety of plants to ozone induces a rapid increase in APS reductase activity that correlates with the oxidation of the glutathione pool and is followed by an increase in free cysteine and total glutathione. During the response to ozone, the level of immunodetectable APS reductase enzyme does not increase. Treatment of A. thaliana seedlings with oxidized glutathione or paraquat induces APS reductase activity even when transcription or translation is blocked with inhibitors. The results suggest that a posttranslational mechanism controls APS reductase. A model is proposed whereby redox regulation of APS reductase provides a rapidly responding, self-regulating mechanism to control the glutathione synthesis necessary to combat oxidative stress.

Crystallization and preliminary X-ray analysis of adenylylsulfate reductase from Archaeoglobus fulgidus.

A group of anaerobic microorganisms use sulfate as the terminal electron acceptor for energy conservation. The process of sulfate reduction involves several enzymatic steps. One of them is the conversion of adenylyl sulfate (adenosine-5'-phosphosulfate) to sulfite, catalyzed by adenylylsulfate reductase. This enzyme is composed of a FAD-containing alpha-subunit and a beta-subunit harbouring two [4Fe-4S] clusters. Adenylylsulfate reductase was isolated from Archaeoglobus fulgidus under anaerobic conditions and crystallized using the hanging-drop vapour-diffusion method using PEG 4000 as precipitant. The crystals grew in space group P2(1)2(1)2(1), with unit-cell parameters a = 72.4, b = 113.2, c = 194.0 A. The asymmetric unit probably contains two alphabeta units. The crystals diffract beyond 2 A resolution and are suitable for X-ray structure analysis.

Structural and kinetic properties of adenylyl sulfate reductase from Catharanthus roseus cell cultures

A cDNA encoding a plant-type APS reductase was isolated from an axenic cell suspension culture of Catharanthus roseus (Genbank/EMBL-databank accession number U63784). The open reading frame of 1392 bp (termed par) encoded for a protein ( M r=51394) consisting of a N-terminal transit peptide, a PAPS reductase-like core and a C-terminal extension with homology to the thioredoxin-like domain of protein disulfide isomerase. The APS reductase precursor was imported into pea chloroplasts in vitro and processed to give a mature protein of ≈45 kDa. The homologous protein from pea chloroplast stroma was detected using anti:par polyclonal antibodies. To investigate the catalytical function of the different domains deleted par proteins were purified. ParΔ1 lacking the transit sequence liberated sulfite from APS ( K m 2.5±0.23 μM) in vitro with glutathione ( K m 3±0.64 mM) as reductant ( V max 2.6±0.14 U mg −1, molecular activity 126 min −1). ParΔ2 lacking the transit sequence and C-terminal domain had to be reconstituted with exogenous thioredoxin as reductant ( K m 15.3±1.27 μM, V max 0.6±0.014 U mg −1). Glutaredoxin, GSH or DTT were ineffective substitutes. ParΔ1 (35.4%) and parΔ2 (21.8%) both exhibited insulin reductase activity comparable to thioredoxin (100%). Protein disulfide isomerase activity was observed for parΔ1.

Catalytic properties of adenylylsulfate reductase from Desulfovibrio vulgaris Miyazaki

Adenylylsulfate reductase (EC 1.8.99.2) isolated from Desulfovibrio vulgaris Miyazaki catalyzes electron transfer from dihydroflavin coenzyme (FADH 2, FMNH 2, or dihydroriboflavin) to adenylyl sulfate (APS), and catalyzes flavin-mediated oxidation of ferrocytochrome c3 with APS. The reaction with FAD as an electron mediator was markedly stimulated in the presence of menadione. K m of the enzyme was about 0.015 mM for riboflavin and FAD in the presence of menadione. Free flavin coenzyme was found to be the normal cellular constituent. These observations suggested that free flavin coenzyme may be a physiological electron carrier for APS reductase, and the enzyme may be called AMP, sulfite:flavin oxidoreductase. K m (APS) of this enzyme is lower than 1 μM. The enzyme is not inhibiteb by ATP and GTP, but was inhibited by AMP and sulfite. Its extremely low K m (APS) enables this enzyme to reduce any traces of cytosolic APS which is present only at micromolar concentration, and inhibition by sulfite makes this organism utilize an energetically favorable electron acceptor, sulfite, preferentially over APS which is produced from sulfate at the cost of ATP.