A nanocomposite (141 nm and +12.46 mV surface charge at pH 2.4) that could provide a single treatment for S. mutans-associated dental carries has been developed. The composite had six components, viz., aprotinin (Apr) that enzymatically inhibits plasmin activity of the bacterium, chitosan (Chi) that inhibits bacterial cell adhesion and biofilm formation, calcium phosphate (CaP) for remineralization of dentine, dexamethasone (DEX) for odontoblast differentiation, collagen (Cen) for crosslinking, and chlorogenic acid (CGA) for bacterial cell death. The structure of nanocomposite (HR SEM) consisted of interconnected pores and was amorphous post incorporation of chitosan. A sustained release of calcium and phosphate ions, lasting from 1 to 20 days at pH 4, an appropriate pH to combat demineralization, was observed, which is essential for remineralization. A 68.79% biofilm degradation was observed after 24 h of treatment, indicating good inhibition of the bacteria. While S. mutans grew well on denture resin specimen, the adhesion was reduced when the specimen was treated with the nanocomposite, indicating deterrence to biofilm formation. 5 Day hemolysis assay revealed red blood cell compatibility of up to 100 μg/25 μL, indicating that the nanocomposite was compatible with RBC. Against L132 cells, cytotoxicity was not observed up to 40 μg/mL for 72 h, a clear indication of non-cytotoxic character of the nanocomposite. CaP(NP)@Chi@CGA@DEX@Cen@Apr nanocomposite thus helps remineralization at cariogenic pH and biofilm degradation of S. mutans.