Mesoporous HZSM-5 zeolites with nanocrystal stacking morphology were directly synthesized via hydrothermal methods without mesoporous templates. The synthesized mesoporous HZSM-5 was subjected to hydrothermal–citric acid washing treatment. The structural and acidic properties of the samples before and after modification were characterized using various techniques. The catalytic performance for butene conversion to propylene was investigated under atmospheric pressure, 500 °C, and a butene weight hourly space velocity (WHSV) of 10 h−1 in a continuous-flow micro-fixed bed reactor. The results show that propylene selectivity increased significantly from 24.7% before modification to 44%, and propylene yield increased from 22% to 38%. After 2 h of hydrothermal–citric acid washing modification, the catalyst maintained a butene conversion rate of 76% and a selectivity of 47% at 525 °C and a WHSV of 10 h−1 after 130 h of continuous reaction, with a propylene yield of 37%. The results indicate that moderate hydrothermal–citric acid washing modification leads to the removal of aluminum from the zeolite framework, reducing the amount and strength of acid but increasing the mesopore quantity. This helps control the reaction pathways and diffusion of intermediate products, suppresses some side reactions, and improves the selectivity and yield of the desired product, propylene, while significantly enhancing catalytic stability.