Phenylalanine butyramide (FBA) is an unnatural amide with the potential to be a postbiotic derivative due to its improved organoleptic and physicochemical properties compared to butyric acid and salts. However, a green biosynthesis method to prepare FBA has not been studied to date. In this study, we mined a novel Acetyl‐CoA synthetase from Methanocella arvoryzae (MethACS) for the synthesis of FBA using a sequence and structure‐guided database mining approach that combines solubility prediction with binding free energy of the protein. MethACS exhibits excellent catalytic performance, pH stability, and good thermophilicity. 0.35 g/L FBA could be produced by MethACS with a 100% conversion rate when the concentration ratio of butyric acid to phenylalaninamide was >1:4. Through density‐functional theory calculations and molecular dynamics simulation, we gained insight into the mechanism of the synthesis of FBA catalyzed by MethACS. Trp264 was further identified as a crucial residue influencing the substrate specificity by saturation mutagenesis. Substrate profiling revealed that MethACS can catalyze the formation of amide derivatives of short‐ and medium‐chain fatty acids. This study offers an efficient approach for investigating the biosynthesis of unnatural substances.
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