Mineral prospectivity mapping (MPM) is crucial for efficient mineral exploration, where prospective zones are identified in a cost-effective manner. This study focuses on generating prospectivity maps for hydrothermal polymetallic mineralization in the Feizabad area, in northeastern Iran, using unsupervised anomaly detection methods, i.e., isolation forest (IForest) and deep isolation forest (DIF) algorithms. As mineralization events are rare and complex, traditional approaches continue to encounter difficulties, despite advances in MPM. In this respect, unsupervised anomaly detection algorithms, which do not rely on ground truth samples, offer a suitable solution. Here, we compile geospatial datasets on the Feizabad area, which is known for its polymetallic mineralization showings. Fourteen evidence layers were created, based on the geology and mineralization characteristics of the area. Both the IForest and DIF algorithms were employed to identify areas with high mineralization potential. The DIF, which uses neural networks to handle non-linear relationships in high-dimensional data, outperformed the traditional decision tree-based IForest algorithm. The results, evaluated through a success rate curve, demonstrated that the DIF provided more accurate prospectivity maps, effectively capturing complex, non-linear relationships. This highlights the DIF algorithm’s suitability for MPM, offering significant advantages over the IForest algorithm. The present study concludes that the DIF algorithm, and similar unsupervised anomaly detection algorithms, are highly effective for MPM, making them valuable tools for both brownfield and greenfield exploration.