Acclimation Strategies Research Articles

Integrative bioinformatics approaches reveal key hub genes in cyanobacteria: insights from Synechocystis sp. PCC 6803 and Geminocystis sp. NIES-3708 under abiotic stress conditions.

Cyanobacteria, particularly Synechocystis sp. PCC 6803, serve as model organisms for studying acclimation strategies that enable adaptation to various environmental stresses. Understanding the molecular mechanisms underlying these adaptations provides insight into how cells adjust gene expression in response to challenging conditions. To analyze the transcriptome data of Synechocystis sp. PCC 6803 under light, salinity, and iron stress conditions and to identify hub genes potentially involved in stress response, specifically comparing the findings with Geminocystis sp. NIES-3708. A comprehensive bioinformatics approach was applied, integrating meta-analysis, weighted gene co-expression network analysis (WGCNA), and a Random Forest (RF) machine learning algorithm. These approaches underscore the robustness of our findings, allowing for a more nuanced understanding of gene interactions and their functional relevance in stress responses. This methodology was used to identify key hub genes in Synechocystis sp. PCC 6803 that may have conserved roles in Geminocystis sp. NIES-3708. A total of four potential hub genes, including slr1392, slr1484, sll1549, and sll1863, were identified. Among these, only sll1549 had a homolog (GM3708_2556) with 71% sequence similarity and 70% query coverage in Geminocystis sp. NIES-3708. The expression of GM3708_2556 was further evaluated under nitrate, salt, and combined salinity-nitrate stress conditions using RT-qPCR. Transcript levels of GM3708_2556 increased significantly under salt stress (3.35-fold, p-value < 0.05) and combined salinity-nitrate stress (2.24-fold, p-value < 0.05) compared to control conditions, while no significant change was observed under nitrate stress alone. These results suggest that GM3708_2556 may play a crucial role in the organism's response to salt stress, with potential interactions in nitrate metabolism. This study highlights the gene GM3708_2556 as a significant factor in salt stress response, with implications for conserved functional roles across cyanobacterial species. Furthermore, the findings have potential relevance to biotechnology, particularly in engineering stress-resistant cyanobacterial strains for applications in sustainable agriculture and bioenergy production.

A sexual dimorphism in zebrafish aggression and metabolism under acute ammonia stress.

Animals must adapt their behaviors in response to environmental stressors to enhance survival prospects. Aquatic organisms, particularly teleost fish, face unique environmental challenges, making them ideal models for studying environmental stress adaptation. While previous research on acute environmental stress acclimation provided valuable insights, it often overlooked potential sex-specific responses. Growing evidence suggests significant sexual dimorphism in physiological and behavioral responses to various environmental stressors. This emerging paradigm reveals a critical knowledge gap in our understanding of sex-specific stress acclimation strategies and their underlying mechanisms in teleost fish. To address this gap, we investigated the effects of acute ammonia exposure, a common aquatic stressor, on male and female zebrafish. We examined differential behaviors and metabolic rates between the sexes under ammonia stress and found sex-specific responses: males tended to recover aggression and reduce fighting latency without affecting outcomes, whereas females exhibited lowered oxygen consumption and reduced aggression. These findings highlight differences in acute stress adaptation strategies between males and females, contributing to a more-comprehensive understanding of sex-specific stress adaptation in aquatic environments and underscoring the importance of considering sexual dimorphism in environmental stress studies.

Light-dependent variations in fatty acid profiles and gene expression in Antarctic microalgal cultures.

Photosynthetic eukaryotic microalgae are key primary producers in the Antarctic sea ice environment. Anticipated changes in sea ice thickness and snow load due to climate change may cause substantial shifts in available light to these ice-associated organisms. This study used a laboratory-based experiment to investigate how light levels, simulating different sea ice and snow thicknesses, affect fatty acid (FA) composition in two ice associated microalgae species, the pennate diatom Nitzschia cf. biundulata and the dinoflagellate Polarella glacialis. FA profiling and transcriptomic analyses were used to compare the impact of three light levels: High (baseline culturing conditions 90 ± 1 μmol photons m-2 s-1), mid (10 ± 1 μmol photons m-2 s-1); and low (1.5 ± 1 μmol photons m-2 s-1) on each isolate. Both microalgal isolates had altered growth rates and shifts in FA composition under different light conditions. Nitzschia cf. biundulata exhibited significant changes in specific saturated and monounsaturated FAs, with a notable increase in energy storage-related FAs under conditions emulating thinner ice or reduced snow cover. Polarella glacialis significantly increased production of polyunsaturated FAs (PUFAs) in mid light conditions, particularly octadecapentaenoic acid (C18:5N-3), indicating enhanced membrane fluidity and synthesis of longer-chain PUFAs. Notably, C18:5N-3 has been identified as an ichthyotoxic molecule, with fish mortalities associated with other high producing marine taxa. High light levels caused down regulation of photosynthetic genes in N. cf. biundulata isolates and up-regulation in P. glacialis isolates. This and the FA composition changes show the variability of acclimation strategies for different taxonomic groups, providing insights into the responses of microalgae to light stress. This variability could impact polar food webs under climate change, particularly through changes in macronutrient availability to higher trophic levels due to species specific acclimation responses. Further research on the broader microalgal community is needed to clarify the extent of these effects.

The Survival of Sympodial and Monopodial Bamboos in the Tropics Depends on Different Acclimatization Strategies

The Survival of Sympodial and Monopodial Bamboos in the Tropics Depends on Different Acclimatization Strategies

Photoacclimation strategies of Chlamydomonas reinhardtii in response to high-light stress in stationary phase.

Under ideal conditions, Chlamydomonas reinhardtii can photoacclimate to excess light through various short- and long-term mechanisms. However, how microalgae handle excess light stress once they exit exponential growth, and especially in stationary phase, is less understood. Our study explored C. reinhardtii's photoprotection capacity and acclimation strategies during high-light stress once batch culture growth reached stationary phase. We monitored cultures of wildtype strain (CC125) over five days once they reached stationary phase under both low-light (LL) and high-light (HL) conditions. Under HL, many photosynthetic proteins were degraded but the stress-related light harvesting complex protein (LHCSR) was rapidly induced and contributed to the rapid activation of nonphotochemical quenching (NPQ). However, the LHCSR3-defective mutant (CC4614, npq4) lacked the rapid induction of quenching typical of post-exponential cultures, indicating that LHCSR3 is required for this response in stationary phase. Collectively, the main strategy for photoacclimation in stationary phase appears to be a dramatic reduction of photosystems while maintaining LHCII-LHCSR antenna complexes that prime the antenna for rapid activation of quenching upon light exposure. Part of this response to HL involves a resumption of cell growth after two days, that we hypothesized is due to the stimulation of growth-regulating pathways due to increased metabolite pools from the HL-induced protein turnover in the cell, something that remains to be tested. These findings demonstrate how C. reinhardtii manages high-light stress during stationary phases to maximize longevity.

Effect of different cold acclimation methods on the exercise capacity of mice in low-temperature environments.

This study aimed to evaluate the effects of different cold acclimation strategies on exercise performance in male mice exposed to low-temperature environments. Male mice were subjected to five distinct acclimation regimens over 8 weeks: immersion at 10°C (10 °CI) or 20°C (20 °CI), swimming at 10°C (10 °CS), 20°C (20 °CS), or 34°C (34 °CS). During the first 2 weeks, the acclimation time progressively decreased from 30min to 3min per day, and the water temperatures were lowered from 34°C to the target levels, followed by 6 weeks of consistent exposure. Body weight, food intake, and rectal temperature were monitored throughout the study. Post-acclimation assessments included low-temperature exhaustion exercise ability testing; 16S rDNA sequencing of gut microbiota; and quantification of gene expression related to brown adipose thermogenesis, skeletal muscle synthesis, and degradation. (1) After 8 weeks of acclimation, neither serum adrenaline nor angiotensin II levels significantly increased in mice exposed to 10°C or 20°C water. (2) Cold acclimation extended the endurance time under low-temperature conditions, notably in the 20 °CI, 10 °CS, and 20°CS groups. (3) Compared with the control (C) group, the 20 °CI and 10°CS groups showed significantly increased UCP1, IGF-1, AKT, and mTOR gene expression levels (P<0.05). The expression levels of MAFbx and MuRF1 genes in the 10°CS and 20°CS groups significantly decreased compared with those in the C group (P<0.05). (4) Compared with the C group, the 20 °CI, 10 °CS, and 20°CS groups demonstrated significant changes in intestinal microbiota diversity. Specifically, the abundance of Akkermansia strains significantly increased in the 20 °CI and 10°CS groups. The abundance of Ruminococcus and Prevotellaceae_UCG-001 significantly increased in the 20°CS group. Exercise in cold environments can activate genes related to heat production and skeletal muscle synthesis and increase the abundance of beneficial bacteria producing short-chain fatty acids, thereby modulating host metabolism, accelerating the formation of cold acclimation, and enhancing exercise capacity in low-temperature environments.

Acclimation Strategies for the Black Sea Diatom Algae Ditylum brightwellii to High Intensity of Light

In cells of a culture of the large diatom Ditylum brightwellii (T. West) Grunow acclimated to weak light (17 μmol photons/(m2 × s)), numerous chloroplasts were evenly distributed throughout the cell cytoplasm. After 10 min of exposure of algae to extremely high illumination (1100 μmol photons/(m2 × s)), their aggregates gradually formed in the center of the cell, which continued until the end of the two-hour exposure period. At light intensities of 510–935 µmol/(photons/(m2 × s) during short-term photoacclimation, chloroplast aggregation was noted for 20–60 min, after which their reverse movement and uniform distribution in the cytoplasm were revealed by the end of the second hour. Under conditions of a longer culture stay at a light intensity of 1100 μmol photons/(m2 × s), the algae retained their viability for only six hours. Long-term photoacclimation of this species, which ended by the end of the second day, was detected when the light weakened by about 2 times. It was expressed as an increase in cell volume and C/Chl a ratio, increased aggregation of chloroplasts in the center of the cell, and a decrease in a number of fluorescent parameters reflecting the efficiency of photosystem II and culture viability.

Light exposure induces phenotypic plasticity of the upside-down jellyfish Cassiopea sp. and its endosymbiotic dinoflagellates

The upside-down jellyfish, Cassiopea, is an increasingly popular model organism gaining prominence for both its endosymbiotic dinoflagellates from the family Symbiodiniaceae and its behavioral changes of bell pulsations associated with environmental cues. Pulsation provides a unique window into the host's response to environmental conditions, a typically difficult to access component of other symbiotic cnidarians. Pulsation has also been hypothesized to play a regulatory role on the endosymbiotic assemblage, but the magnitude of this regulatory effect is not well understood. Here, we used two light-acclimation experiments to help disentangle the complex phenotypic responses of the cnidarian host and its endosymbiotic dinoflagellates. The first experiment examined the phenotypic plasticity (size, behavior, color) of Cassiopea sp. in response to repeated ambient light acclimation trials to determine the rate and magnitude of phenotypic plasticity. The second experiment compared the acclimation response of jellyfish across three experimental groups to test whether a short acclimation time destabilized the host-endosymbiont relationship. Our goal was to identify covarying host-endosymbiont phenotypes to gain new insights into the dynamics of this relationship. We employed flow cytometric phenotypic profiling for high-throughput phenotypic characterization of endosymbiotic dinoflagellates in addition to pulse-amplitude modulated (PAM) fluorometry to characterize photosynthetic efficiency (Fv/Fm). Host phenotypes responded predictably to light-dark cycles and stabilized after nine to twelve days of exposure to consistent light conditions. However, disruption of this acclimation period affected the holobiont's phenotypic profile. We also found evidence that phenotypic responses of the host and endosymbionts were generally decoupled, indicating a stronger regulatory response of light conditions on phenotypes than possible host-regulatory strategies on the endosymbiotic assemblage. This study provides unique insights into the acclimation strategies of upside-down jellyfish, an emerging model for the study of cnidarian-dinoflagellate symbiosis.

Independent and interactive effects of N and P additions on foliar P fractions in evergreen forests of southern China

Fertilization or atmospheric deposition of nitrogen (N) and phosphorus (P) to terrestrial ecosystems can alter soil N (P) availability and the nature of nutrient limitation for plant growth. Changing the allocation of leaf P fractions is potentially an adaptive strategy for plants to cope with soil N (P) availability and nutrient-limiting conditions. However, the impact of the interactions between imbalanced anthropogenic N and P inputs on the concentrations and allocation proportions of leaf P fractions in forest woody plants remains elusive. We conducted a meta-analysis of data about the concentrations and allocation proportions of leaf P fractions, specifically associated with individual and combined additions of N and P in evergreen forests, the dominant vegetation type in southern China where the primary productivity is usually considered limited by P. This assessment allowed us to quantitatively evaluate the effects of N and P additions alone and interactively on leaf P allocation and use strategies. Nitrogen addition (exacerbating P limitation) reduced the concentrations of leaf total P and different leaf P fractions. Nitrogen addition reduced the allocation to leaf metabolic P but increased the allocation to other fractions, while P addition showed opposite trends. The simultaneous additions of N and P showed an antagonistic (mutual suppression) effect on the concentrations of leaf P fractions, but an additive (summary) effect on the allocation proportions of leaf P fractions. These results highlight the importance of strategies of leaf P fraction allocation in forest plants under changes in environmental nutrient availability. Importantly, our study identified critical interactions associated with combined N and P inputs that affect leaf P fractions, thus aiding in predicting plant acclimation strategies in the context of intensifying and imbalanced anthropogenic nutrient inputs.

Pushing Scuba to New Heights: Approach, Decompression, and Logistical Considerations for High-Altitude Diving.

There is interest among technical, expedition, commercial, and military divers in expanding diving operations to high altitude. However, altitude diving presents unique challenges including acclimatization, increased decompression sickness (DCS) risk, and logistical and equipment considerations. Divers must plan altitude acclimatization strategies conservatively to reduce risk of acute mountain sickness and dehydration before diving. Several methods of augmenting sea level diving tables to be used at altitude have been theorized and tested both in simulated dives and high-altitude expeditions. With proper acclimatization, augmentation of standard diving tables, equipment, and safety planning, diving at high altitude may be performed in many contexts safely while minimizing risk of DCS or injury.

Microbial ecophysiology: Shedding light on the re-greening of chlorotic cyanobacteria

Cyanobacteria, key contributors to aquatic CO2 fixation, employ sophisticated acclimation strategies for survival under nitrogen-limited conditions. A new study reveals that red light influences the resuscitation of chlorotic cells through mechanisms involving the dark-operative protochlorophyllide reductase, which facilitates chlorophyll biosynthesis and re-greening under low-light conditions.

Light Changes Promote Distinct Responses of Plastid Protein Acetylation Marks

Protein acetylation is a key co- and post-translational modification. However, how different types of acetylation respond to environmental stress is still unknown. To address this, we investigated the role of a member of the newly discovered family of plastid acetyltransferases (GNAT2), which features both lysine- and N-terminal acetyltransferase activities. Our study aimed to provide a holistic multi-omics acetylation-dependent view of plant acclimation to short-term light changes. We found that both the yield and coverage of the N-terminal acetylome remained unchanged in WT and gnat2-KO backgrounds after 2h of exposure to high light or darkness. Similarly, no differences in transcriptome or adenylate energy charge were observed between the genotypes under the tested light conditions. In contrast, the lysine acetylome proved to be sensitive to the changes in light conditions, especially in the gnat2 background. This suggests unique strategies of plant acclimation for quick responses to environmental changes involving lysine, but not N-terminal, GNAT2-mediated acetylation activity.

Key Genes FECH and ALAS2 under Acute High-Altitude Exposure: A Gene Expression and Network Analysis Based on Expression Profile Data.

High-altitude acclimatization refers to the physiological adjustments and adaptation processes by which the human body gradually adapts to the hypoxic conditions of high altitudes after entering such environments. This study analyzed three mRNA expression profile datasets from the GEO database, focusing on 93 healthy residents from low altitudes (≤1400 m). Peripheral blood samples were collected for analysis on the third day after these individuals rapidly ascended to higher altitudes (3000-5300 m). The analysis identified significant differential expression in 382 genes, with 361 genes upregulated and 21 downregulated. Further, gene ontology (GO) annotation analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis indicated that the top-ranked enriched pathways are upregulated, involving blood gas transport, erythrocyte development and differentiation, and heme biosynthetic process. Network analysis highlighted ten key genes, namely, SLC4A1, FECH, EPB42, SNCA, GATA1, KLF1, GYPB, ALAS2, DMTN, and GYPA. Analysis revealed that two of these key genes, FECH and ALAS2, play a critical role in the heme biosynthetic process, which is pivotal in the development and maturation of red blood cells. These findings provide new insights into the key gene mechanisms of high-altitude acclimatization and identify potential biomarkers and targets for personalized acclimatization strategies.

Acclimation Strategies for the Black Sea Diatom Algae Ditylum brightwellii to High Intensity of Light

In cells of a culture of the large diatom Ditylum brightwellii (T. West) Grunow acclimated to faint light (17 μmol photons/(m2 s)), numerous chloroplasts are evenly distributed throughout the cell cytoplasm. After 10 min of exposure of algae to extremely high illumination (1100 μmol photons/(m2 s)), their aggregates gradually form in the center of the cell, and their formation continues until the end of the 2-h exposure period. At light intensities of 510–935 µmol photons/(m2 s) during short-term photoacclimation, the aggregation of chloroplasts is recorded for 20–60 min, after which their reverse movement and uniform distribution in the cytoplasm are revealed by the end of the second hour. Under conditions of a longer culture stay at a light intensity of 1100 μmol photons/(m2 s), the algae retains viability for only 6 h. Long-term photoacclimation of this species, which stops by the end of the second day, is detected when the light becomes half as weak. This is manifested in an increase in cell volume and in the C/Chl a ratio, in the increased aggregation of chloroplasts in the center of the cell, and in a decrease in a number of fluorescent parameters of the efficiency of photosystem II and of culture viability.

Residues from the Fundão Dam Accident in Brazil and their Effects on Photosynthetic Efficiency of Two Restinga Plant Species.

In 2015, a breach in the Fundão Dam in Mariana (Minas Gerais State, Brazil) resulted in the release of contaminated tailings into the Doce River basin. This accident increased the concentrations of arsenic (As), lead (Pb), cadmium (Cd), vanadium (V), and manganese (Mn) in the soil, posing a potential hazard to the physiology of native species. The purpose of this study was to assess whether chlorophyll a fluorescence (ChlF) in Allagoptera arenaria and Guapira pernambucensis changed following this accident when tested under different precipitation regimes in relation to soil properties and metal(loid) absorption. Our research was conducted in two sites located in the state of Espírito Santo in southeastern Brazil. Five independent biological replicates of A. arenaria and G. pernambucensis were selected at each site for nutritional and chlorophyll a fluorescence analysis. Five years after the dam rupture, A. arenaria and G. pernambucensis had absorbed As, Pb, and V. The increased amounts of metal(loid)s absorbed did not significantly impair the OJIP curve configuration for either species during the evaluated periods. However, A. arenaria at Biological Reserve of Comboios (RBC) during the rainy season showed increases in the values of maximum quantum yield of PSII photochemistry (φP0) and total performance index on absorption basis (PITOTAL). These changes indicated more efficient tolerance mechanisms for increases in the concentrations of As, Pb, and V than those observed in G. pernambucensis. It was concluded that A. arenaria and G. pernambucensis exhibited an acclimation strategy in response to increased absorption of metal(loid)s.

Salinity Stress Acclimation Strategies in Chlamydomonas sp. Revealed by Physiological, Morphological and Transcriptomic Approaches.

Climate changes may include variations in salinity concentrations at sea by changing ocean dynamics. These variations may be especially challenging for marine photosynthetic organisms, affecting their growth and distribution. Chlamydomonas spp. are ubiquitous and are often found in extreme salinity conditions. For this reason, they are considered good model species to study salinity adaptation strategies. In the current study, we used an integrated approach to study the Chlamydomonas sp. CCMP225 response to salinities of 20‱ and 70‱, by combining physiological, morphological, and transcriptomic analyses, and comparing differentially expressed genes in the exponential and stationary growth phases under the two salinity conditions. The results showed that the strain is able to grow under all tested salinity conditions and maintains a surprisingly high photosynthetic efficiency even under high salinities. However, at the highest salinity condition, the cells lose their flagella. The transcriptomic analysis highlighted the up- or down-regulation of specific gene categories, helping to identify key genes responding to salinity stress. Overall, the findings may be of interest to the marine biology, ecology, and biotechnology communities, to better understand species adaptation mechanisms under possible global change scenarios and the potential activation of enzymes involved in the synthesis of bioactive molecules.

Arbuscular Mycorrhizal Fungi Mediate the Acclimation of Rice to Submergence.

Flooding is a critical factor that limits the establishment of a symbiosis between rice and arbuscular mycorrhizal fungi (AMF) in wetland ecosystems. The distribution of carbon resources in roots and the acclimation strategies of rice to flooding stress in the presence of AMF are poorly understood. We conducted a root box experiment, employing nylon sheets or nylon meshes to create separate fungal chambers that either prevented or allowed the roots and any molecules to pass through. We found that the mycorrhizal colonization rate and the expression of genes OsD14L and OsCERK1, which are involved in fungal perception during symbiosis, both increased in mycorrhizal rice roots following intermittent flooding compared to continuous flooding. Furthermore, AMF inoculation affected root morphological traits, facilitating both shallower and deeper soil exploration. Increased submergence intensity led to carbohydrate deprivation in roots, while high mycorrhizal colonization increased soil oxygen consumption and decreased the neutral lipid concentration in roots. However, mycorrhizal inoculation increased the rice photosynthesis rate and facilitated acclimation to submergence by mediating the expression of the genes OsCIPK15 and OsSUB1A to enhance rice shoot elongation and the sugar concentration in roots as a result of reduced competition for carbon between rice and AMF under different flooding conditions.

Hepatic Transcriptomic Responsiveness of Polar Cod, Boreogadus saida, to Ocean Acidification and Warming

Background: This study was part of a larger comprehensive project (BIOACID) addressing the physiological resilience of Polar cod, Boreogadus saida, to ocean acidification and global warming and aimed to unravel underlying molecular mechanisms of the observed physiological responses. Methods: Fish were acclimated long-term to three CO2 concentrations comprising control conditions (390 ppm) and two projected climate scenarios (780 ppm and 1170 ppm). Each CO2 treatment was combined with four temperatures: 0, 3, 6, and 8 °C. Here, we focused on the hepatic transcriptomic profiles from these previously physiologically characterized fish. Results: Generally, we did not detect signs of a classical stress response. Consistent with functional observations, warming induced much stronger molecular responses compared to elevated PCO2, but an interaction between both factors existed to some extent. Gene ontology analysis revealed a strong response in lipid, amino acid, and protein metabolism. With increasing temperature, we observed a shift away from lipid metabolism, while carbohydrate metabolic pathways remained stable. Conclusions: Although we found Polar cod to be quite resilient to ocean acidification, temperature will remain a critical parameter for this valuable Arctic keystone species, and the question remains as to whether the observed acclimation strategies can be implemented in its natural habitat, especially when food supply is limited.

Exploring the coordinated hydraulic plasticity across organs in soybean plants exposed to drought cycles

The coordination of hydraulic function among different organs and their plasticity under stressful conditions are crucial for understanding drought tolerance in crops but remains poorly understood. Here, we evaluate the hydraulic plasticity in soybean organs exposed to one or two droughts and correlated this plasticity with recovery after rewatering. Repeated drought events resulted in different levels of dehydration in soybean leaves since plants exposed to two droughts (D2 plants) maintained higher water potential than plants exposed to a single drought (D1 plants). The difference in leaf water potential reflected the different drought acclimation strategies in D1 and D2 plants. D1 plants increased root hydraulic conductance, a change that can occur rapidly due to molecular modifications. The first drought also acted as an environmental cue, triggering changes that continued to develop over time (anatomical changes) and which increased water transport in the stem of D2 plants, reducing the drought impact in these organs and maintaining the water transport to the leaves. Leaves of D1 and D2 plants, in turn, reduced vulnerability to embolism, avoiding losses in rehydration capacity and helping to maintain the hydraulic functions essential for the rapid recovery of photosynthesis after rewatering.

Novel candidate genes for environmental stresses response in Synechocystis sp. PCC 6803 revealed by machine learning algorithms.

Cyanobacteria have developed acclimation strategies to adapt to harsh environments, making them a model organism. Understanding the molecular mechanisms of tolerance to abiotic stresses can help elucidate how cells change their gene expression patterns in response to stress. Recent advances in sequencing techniques and bioinformatics analysis methods have led to the discovery of many genes involved in stress response in organisms. The Synechocystis sp. PCC 6803 is a suitable microorganism for studying transcriptome response under environmental stress. Therefore, for the first time, we employed two effective feature selection techniques namely and support vector machine recursive feature elimination (SVM-RFE) and LASSO (Least Absolute Shrinkage Selector Operator) to pinpoint the crucial genes responsive to environmental stresses in Synechocystis sp. PCC 6803. We applied these algorithms of machine learning to analyze the transcriptomic data of Synechocystis sp. PCC 6803 under distinct conditions, encompassing light, salt and iron stress conditions. Seven candidate genes namely sll1862, slr0650, sll0760, slr0091, ssl3044, slr1285, and slr1687 were selected by both LASSO and SVM-RFE algorithms. RNA-seq analysis was performed to validate the efficiency of our feature selection approach in selecting the most important genes. The RNA-seq analysis revealed significantly high expression for five genes namely sll1862, slr1687, ssl3044, slr1285, and slr0650 under ion stress condition. Among these five genes, ssl3044 and slr0650 could be introduced as new potential candidate genes for further confirmatory genetic studies, to determine their roles in their response to abiotic stresses.