ACC Deaminase Research Articles

Exploring plant-microbe interactions in adapting to abiotic stress under climate change: a review

Climatic change and extreme weather events have become a major threat to global agricultural productivity. Plants coexist with microorganisms, which play a significant role in influencing their growth and functional traits. The rhizosphere serves as an ecological niche encompassing plant roots and is a chemically complex environment that supports the growth and development of diverse plant-interactive microbes. Although plant-microbe interactions have been extensively investigated however, limited exploration have been made how abiotic stresses affect the structure and assembly of microbial communities in the rhizosphere. This review highlights climate change influence on plant growth, functional traits, and microbial communities. It explores plant mechanisms for mitigating abiotic stress, such as removing reactive oxygen species (ROS), regulating antioxidant activity and indole-3-acetic acid (IAA) production, and controlling growth-inhibitory ethylene levels through colonization by bacteria producing ACC deaminase. Additionally, we elaborated the systematic communicatory network steered by hormonal crosstalk and root exudation, which can modulate and initiate the dialogues between plants and surrounding microbes. This network ultimately promotes the chemotactic movement of microbes towards the rhizosphere, facilitating their early colonization. Finally, we reviewed the recent advancements for understanding how plant-microbe interactions foster resilience under climate stress.

Deletion of ACC Deaminase in Symbionts Converts the Host Plant From Water Waster to Water Saver.

Increasing drought events coupled with dwindling water reserves threaten global food production and security. This issue is exacerbated by the use of crops that overconsume water, undermining yield. We show here that microorganisms naturally associated with plant roots can undermine efficient water use, whereas modified bacteria can enhance it. We demonstrate that microbe-encoded genes shape drought tolerance, likely by modulating plant hormonal balance. Specifically, we built a minimal holobiont out of Arabidopsis thaliana and either the bacterium Pseudomonas putida UW4 or its isogenic AcdS- mutant, lacking the enzyme ACC deaminase. This enzyme breaks down the precursor of ethylene, a key regulator in plant response to drought. This single mutation profoundly affected plant physiology and shifted the plant from a 'water-spender' (with more growth under well-watered conditions) to a 'water-spender' phenotype. Under drought, plants associated with wild-type bacteria consumed soil water faster, leading to a shorter period of growth followed by death. In contrast, plants associated with the AcdS- mutant managed to maintain growth by reducing water consumption via stomatal closure, thus conserving soil water. This allowed plants to survive severe water deficiency. We conclude that plant-associated bacteria can modulate plant water use strategies, opening possibilities to engineer water-savvy crop-production systems.

Paddy seeds bacterization with ACC deaminase producing endophyte Alcaligenes faecalis SSP8 regulates physiology, leaves gas exchange parameters, PSII photochemistry and antioxidant enzymes metabolism in NaCl stressed seedlings

Paddy seeds bacterization with ACC deaminase producing endophyte Alcaligenes faecalis SSP8 regulates physiology, leaves gas exchange parameters, PSII photochemistry and antioxidant enzymes metabolism in NaCl stressed seedlings

Selection and Effect of Plant Growth-Promoting Bacteria on Pine Seedlings (Pinus montezumae and Pinus patula).

Forest cover is deteriorating rapidly due to anthropogenic causes, making its restoration urgent. Plant growth-promoting bacteria (PGPB) could offer a viable solution to ensure successful reforestation efforts. This study aimed to select bacterial strains with mechanisms that promote plant growth and enhance seedling development. The bacterial strains used in this study were isolated from the rhizosphere and endophyte regions of Pinus montezumae Lamb. and Pinus patula Schl. et Cham., two Mexican conifer species commonly used for reforestation purposes. Sixteen bacterial strains were selected for their ability to produce auxins, chitinase, and siderophores, perform nitrogen fixation, and solubilize inorganic phosphates; they also harbored genes encoding antimicrobial production and ACC deaminase. The adhesion to seeds, germination rate, and seedling response of P. montezumae and P. patula were performed following inoculation with 10 bacterial strains exhibiting high plant growth-promoting potential. Some strains demonstrated the capacity to enhance seedling growth. The selected strains were taxonomically characterized and belonged to the genus Serratia, Buttiauxella, and Bacillus. These strains exhibited at least two mechanisms of action, including the production of indole-3-acetic acid, biological nitrogen fixation, and phosphate solubilization, and could serve as potential alternatives for the reforestation of affected areas.

Exploring the Potential of Bacterial Endophytes in Plant Disease Management.

Endophytic bacteria live in the internal tissues of plants, forming symbiotic, mutualistic, commensalistic and trophobiotic relationships. Some are spread via seeds after sprouting from the rhizosphere or phyllosphere. These bacteria capable of promoting plant growth and impart biotic stress by synthesing plant growth hormones, ACC deaminase, organic acids and siderophore. Endophytes aid in phytoremediation by removing soil contaminants and boosting soil fertility via phosphate solubilization and nitrogen fixation. The endophytic microbes are becoming increasingly popular in biotechnological applications which supports sustainable growth of non-food crops for biomass and biofuel. They offer valuable natural materials which is used in medicine, agriculture and industry. Bacterial endophytes are endowed with the enormous potential in the biological treatment of plant pathogens and considered as the superior alternative to synthetic fungicides. The review emphasizes benefits of bacterial endophytes in promoting plant growth and prospects of agricultural applications viz., increasing crop yield under biotic stress condition and their mode of action towards plant diseases. It also summarises the diverse and vital role of endophytes in agroecosystems as well as insights for sustainable agriculture and crop resilience.

The role of Ni- and Cd-resistant rhizobacteria in promoting the growth of rice seedlings and alleviating the combined phytotoxicity of Ni and Cd

The problem of potentially toxic metal pollution is increasingly acute with the development of human society. In this study, we investigated the remediation of nickel (Ni) and cadmium (Cd) co-contamination through inoculating rice with three new-isolated Ni- and Cd-resistant plant growth-promoting rhizobacteria (PGPR) Y3, Y4, and Y5. These three strains possessed growth-promoting properties, including 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity, the ability of indoleacetic acid (IAA) production, phosphate solubilization, siderophores production, and exopolysaccharide (EPS) development. According to 16S rDNA sequence homology, strains Y3, Y4, and Y5 were identified as Pseudomonas sp., Chryseobacterium sp., and Enterobacter sp., respectively. Based on the results of rice germination experiments conducted under combined toxicity, we set the contamination concentrations for Ni2+ at 20 μg mL−1 and Cd2+ at 40 μg mL−1. Then we conducted potting experiments at these concentration levels to study the effects of strains Y3, Y4, and Y5 on rice growth under synergistic Ni and Cd stress. The results indicated that the inoculated strains Y3, Y4, and Y5 were effective in promoting the growth of rice seedlings under the combined stress of Ni and Cd, and conferring tolerance to Ni and Cd by increasing the antioxidant enzyme activities of the seedlings. Among them, strain Y3 exhibited stronger ACC deaminase activity, IAA production capacity, and EPS production capacity, showing the most pronounced growth-promoting effect on rice. It was demonstrated that after inoculation with strain Y3, the germination rate of rice seeds increased by 43 %, the fresh weight of stems improved by 35 %, and the chlorophyll content enhanced by 70 % and other growth-promoting phenomena. Additionally, under Ni and Cd stress, strain Y5 performed better than strain Y4 in terms of IAA production capacity and its influence on rice root growth, suggesting that IAA production might play a specifically essential role in root growth under Ni and Cd stress.

Genetic diversity, stress tolerance and phytobeneficial potential in rhizobacteria of Vachellia tortilis subsp. raddiana

BackgroundSoil bacteria often form close associations with their host plants, particularly within the root compartment, playing a significant role in plant growth and stress resilience. Vachellia tortilis subsp. raddiana, (V. tortilis subsp. raddiana)a leguminous tree, naturally thrives in the harsh, arid climate of the Guelmim region in southern Morocco. This study aims to explore the diversity and potential plant growth-promoting (PGP) activities of bacteria associated with this tree.ResultsA total of 152 bacterial isolates were obtained from the rhizosphere of V. tortilis subsp. raddiana. Rep-PCR fingerprinting revealed 25 distinct genomic groups, leading to the selection of 84 representative strains for further molecular identification via 16 S rRNA gene sequencing. Seventeen genera were identified, with Bacillus and Pseudomonas being predominant. Bacillus strains demonstrated significant tolerance to water stress (up to 30% PEG), while Pseudomonas strains showed high salinity tolerance (up to 14% NaCl). In vitro studies indicated variability in PGP activities among the strains, including mineral solubilization, biological nitrogen fixation, ACC deaminase activity, and production of auxin, siderophores, ammonia, lytic enzymes, and HCN. Three elite strains were selected for greenhouse inoculation trials with V. tortilis subsp. raddiana. Strain LMR725 notably enhanced various plant growth parameters compared to uninoculated control plants.ConclusionsThe findings underscore the potential of Bacillus and Pseudomonas strains as biofertilizers, with strain LMR725 showing particular promise in enhancing the growth of V. tortilis subsp. raddiana. This strain emerges as a strong candidate for biofertilizer formulation aimed at improving plant growth and resilience in arid environments.

Rhizobacteria Isolated from Amazonian Soils Reduce the Effects of Water Stress on the Growth of Açaí (Euterpe oleracea Mart.) Palm Seedlings.

Euterpe oleracea Mart., also known for its fruit açaí, is a palm native to the Amazon region. The state of Pará, Brazil, accounts for over 90% of açaí production. Demand for the fruit in national and international markets is increasing; however, climate change and diseases such as anthracnose, caused by the fungus Colletotrichum sp., lead to decreased production. To meet demand, measures such as expanding cultivation in upland areas are often adopted, requiring substantial economic investments, particularly in irrigation. Therefore, the aim of this study was to evaluate the potential of açaí rhizobacteria in promoting plant growth (PGPR). Rhizospheric soil samples from floodplain and upland açaí plantations were collected during rainy and dry seasons. Bacterial strains were isolated using the serial dilution method, and subsequent assays evaluated their ability to promote plant growth. Soil analyses indicated that the sampling period influenced the physicochemical properties of both areas, with increases observed during winter for most soil components like organic matter and C/N ratio. A total of 177 bacterial strains were isolated from rhizospheres of açaí trees cultivated in floodplain and upland areas across dry and rainy seasons. Among these strains, 24% produced IAA, 18% synthesized ACC deaminase, 11% mineralized organic phosphate, and 9% solubilized inorganic phosphate, among other characteristics. Interestingly, 88% inhibited the growth of phytopathogenic fungi of the genera Curvularia and Colletotrichum. Analysis under simulated water stress using Polyethylene Glycol 6000 revealed that 23% of the strains exhibited tolerance. Two strains were identified as Bacillus proteolyticus (PP218346) and Priestia aryabhattai (PP218347). Inoculation with these strains increased the speed and percentage of açaí seed germination. When inoculated in consortium, 85% of seeds germinated under severe stress, compared to only 10% in the control treatment. Therefore, these bacteria show potential for use as biofertilizers, enhancing the initial development of açaí plants and contributing to sustainable agricultural practices.

Multifunctional fluorescent Pseudomonas: effects on maize development and tools for their selection

Maize is one of the most cultivated cereals worldwide. Despite the low nutrient availability in the soil, high amounts of fertilizers are applied causing economic and environmental impacts. Then, Plant Growth Promoting Rhizobacteria (PGPR) as Fluorescent Pseudomonas can be utilized as an alternative. The present work aims to analyze the effect of Pseudomonas isolates on maize development and production and verify the relationship between growth mechanisms and IAA production. Sixteen Pseudomonas isolates were tested in vitro to produce IAA, ACC deaminase, siderophores, and solubilize Fe and Al phosphates. Three isolates (CBSAL02, CBSAL05, and CBSAL06) were selected for the field experiment, in which an A. brasilense inoculant was the control, generating five treatments with four replications. More than 50% of the isolates demonstrated the tested mechanisms. Only CBSAL05 did not produce siderophore or could fix N. Inoculations with A. brasilense and Pseudomonas isolates increased leaf N content among the selected isolates. The CBSAL06 isolate increased productivity, thus demonstrating the potential use as an inoculant.

Implications of Domestication in Theobroma cacao L. Seed-Borne Microbial Endophytes Diversity

The study of plant–microbe interactions is a rapidly growing research field, with increasing attention to the role of seed-borne microbial endophytes in protecting the plant during its development from abiotic and biotic stresses. Recent evidence suggests that seed microbiota is crucial in establishing the plant microbial community, affecting its composition and structure, and influencing plant physiology and ecology. For Theobroma cacao L., the diversity and composition of vertically transmitted microbes have yet to be addressed in detail. We explored the composition and diversity of seed-borne endophytes in cacao pods of commercial genotypes (ICS95, IMC67), recently liberated genotypes from AGROSAVIA (TCS01, TCS19), and landraces from Tumaco (Colombia) (AC9, ROS1, ROS2), to evaluate microbial vertical transmission and establishment in various tissues during plant development. We observed a higher abundance of Pseudomonas and Pantoea genera in the landraces and AGROSAVIA genotypes, while the commercial genotypes presented a higher number of bacteria species but in low abundance. In addition, all the genotypes and plant tissues showed a high percentage of fungi of the genus Penicillium. These results indicate that domestication in cacao has increased bacterial endophyte diversity but has reduced their abundance. We isolated some of these seed-borne endophytes to evaluate their potential as growth promoters and found that Bacillus, Pantoea, and Pseudomonas strains presented high production of indole acetic acid and ACC deaminase activity. Our results suggest that cacao domestication could lead to the loss of essential bacteria for seedling establishment and development. This study improves our understanding of the relationship and interaction between perennial plants and seed-borne microbiota.

Pseudomonas and Acinetobacter spp. capable of metabolizing aromatics displays multifarious plant growth promoting traits: Insights on strategizing consortium-based application to agro-ecosystems

The persistence and slow rate of natural attenuation of genotoxic and endocrine-disrupting aromatic pollutants has impacted the soil heath of agro-ecologies leading to various health and environmental issues. Ecotoxic-xenobiotic compounds degradation property along with plant growth promoting traits of microbes are beneficial for devising strategies for improved agricultural soil health and its clean-up. Present study assessed the multipartite plant growth promoting-, biocontrol- and niche adaptive- traits of five aromatic degrading soil bacteria viz. Pseudomonas bharatica CSV86T, Pseudomonas sp. C5pp, Pseudomonas sp. PP4, Pseudomonas sp. PPD and Acinetobacter sp. ISP4. Solubilization of rock phosphate (P) and feldspar (K), production of plant growth hormone (auxin; IAA), ammonia, siderophores and ACC deaminase by strain CSV86T, C5pp and PP4 were observed. Similarly, high fusaric acid resistance (MIC: 1–1.2 mg mL−1) and tolerance to salinity (5–7.5 %) was observed. In vitro application of CSV86T, C5pp, PP4 and ISP4 as consortium resulted in significant increase (P < 0.05) in the seedling shoot length (15–37 %), root length (65–150 %) and biomass (30–40 %) of wheat, mung bean and fenugreek. In-soil microcosm assay confirmed the plant growth promoting and phytoprotective ability of this consortium against toxicity of aromatics in contaminated soil. Antifungal activity against phytopathogenic fungi Magnaporthe oryzae and Aspergillus spp., ability to produce lytic enzymes and HCN suggests their biocontrol potential. Four aromatic degrading bacteria (as a consortium) exhibiting plant growth promotion and biocontrol activity could be used as an eco-friendly bioremediator-biofertilizer-biocontrol agent (bioformulation) for restoration of agricultural soil with improved crop productivity.

Plant growth promoting activities of endophytic bacteria from Melia azedarach (Meliaceae) and their influence on plant growth under gnotobiotic conditions

Bacteria that live asymptomatically within plant tissues are known as endophytes. Because of the close relation with the plant host, they have been a matter of interest for application as plant growth promoters. Melia azedarach is a widely distributed medicinal tree with proven insecticidal, antimicrobial, and antiviral activity. The aim of this study was to isolate and characterize endophytic bacteria from M. azedarach and analyze their plant growth promoting activities for the potential application as biological products. Bacteria were isolated from roots and leaves of trees growing in two locations of Northeastern Argentina. The isolates were characterized by repetitive extragenic palindromic sequence PCR and 16S rDNA sequence analysis. The plant growth-promoting activities were assayed in vitro, improvement of plant growth of selected isolates was tested on M. azedarach plantlets, and the effect of selected ACC deaminase producing isolates was tested on tomato seedlings under salt-stress conditions. The highest endophytic bacterial abundance and diversity were obtained from the roots. All isolates had at least one of the assayed plant growth-promoting activities and 80 % of them had antagonistic activity. The most efficient bacteria were Pseudomonas monteilii, Pseudomonas farsensis, Burkholderia sp. and Cupriavidus sp. for phosphate solubilization (2064 μg P ml−1), IAA production (94.7 μg ml−1), siderophore production index (5.5) and ACC deaminase activity (1294 nmol α-ketobutyrate mg−1 h−1). M. azedarach inoculation assays revealed the bacterial growth promotion potential, with Pseudomonas monteilii, Pseudomonas farsensis and Cupriavidus sp. standing out for their effect on leaf area, leaf dry weight, specific leaf area, and total Chl, Mg and N content, with increases of up to 149 %, 58 %, 65 %, 178 %, 76 % and 97.7 %, respectively, compared to NI plants. Efficient ACC deaminase-producing isolates increased stress tolerance of tomato plants under saline condition. Overall, these findings indicate the potential of the endophytic isolates as biostimulant and biocontrol agents.

The design and development of EcoBiomes: Multi-species synthetic microbial consortia inspired by natural desert microbiome to enhance the resilience of climate-sensitive ecosystems

Synthetic microbial communities, which simplify the complexity of natural ecosystems while retaining their key features, are gaining momentum in engineering and biotechnology applications. One potential application is the development of bioinoculants, offering an eco-friendly, sustainable solution to promote plant growth and increase resilience to abiotic stresses amidst climate change. A potential source for stress-tolerant microbes is those associated with desert plants, evolved and shaped by selective pressures to promote host health under harsh environmental conditions. In our research, we aim to design and develop synthetic microbial consortia inspired by the natural microbiota of four desert plants native to the Arabian Peninsula, inferred from our previous work identifying the structure and predicting the function of these microbial communities using high throughput eDNA barcoding. To obtain culturable microbes that are manageable and traceable yet still representative of natural microbial communities, we combined multiple experimental protocols coupled with compatibility and synergy assessments, along with in planta testing. We isolated a total of 75 bacteria and conducted detailed biological evaluations, revealing that an overwhelming majority (84 %) of all isolates produced indole acetic acid (IAA), with 73 % capable of solubilizing phosphate, 60 % producing siderophores, 47 % forming biofilms, and 35 % producing ACC deaminase, all contributing to plant growth and stress tolerance. We constructed four synthetic microbial consortia, named EcoBiomes, consisting of synergistic combinations of multiple species that can co-exist without significant antagonism. Our preliminary data indicate that EcoBiomes enhance the resilience of heterologous host plants under simulated environmental stresses, including drought, heat, and salinity. EcoBiomes offer a unique, sustainable, and eco-friendly solution to mitigate the impact of climate change on sensitive ecosystems, ultimately affecting global food security.

Isolation and assessment of the beneficial effect of exopolysaccharide-producing PGPR in Triticum aestivum (L.) plants grown under NaCl and Cd -stressed conditions

Exopolysaccharide (EPS)-producing beneficial bacteria play a multifaceted role in improving plant growth and adaptive responses against different stressors. In this study, we isolated 25 bacterial strains from pea nodules and were further studied for their sodium chloride (NaCl) and cadmium (Cd) stress tolerance. Based on our results, Rhizobium fabae SR-22 (NCBI Accession number: MG063739.1) showed better tolerance toward salinity and Cd stress and produced a wide range of plant growth-promoting compounds. However, the amount of EPS varies during NaCl and Cd stress. It was important to note that NaCl and Cd beyond the tolerant level, affected the morphology and cellular viability of R. fabae. Interestingly, plant growth-promoting (PGP) substances (indole-3-acetic acid, ammonia, siderophore, and ACC deaminase) released by R. fabae were increased with increasing NaCl concentrations. In contrast, PGP substances were greatly decreased by increasing Cd dosages. Further, the beneficial effect of EPS-producing R. fabae in Triticum aestivum grown in soil treated with different levels of NaCl and Cd was assessed. Inoculation of R. fabae in wheat seedlings grown under higher NaCl and Cd concentrations showed improved growth compared to non-inoculated plants. R. fabae exhibited maximum effect in wheat plants grown under 2% NaCl and increased seed germination (8%), root length (13%), vigor indices (19%), root biomass (20%), chlorophyll-a (31%), total chlorophyll (27%) and carotenoid content. Additionally, R. fabae increased Cd and NaCl tolerance in wheat seedlings and improved their antioxidative responses. Conclusively, this work demonstrated that EPS-producing R. fabae showed a promising role in mitigating salinity and Cd-stress in wheat possibly by reducing salt and HM stress-induced abrasions and growth promotion via inorganic phosphate solubilization, and increased nutrient absorption. In the future, R. fabae equipped with these distinguishing characteristics may be used as effective bio-inoculants/bio-formulations in agriculture to address salinity and HM stress issues.

Enhanced Growth and Contrasting Effects on Arsenic Phytoextraction in Pteris vittata through Rhizosphere Bacterial Inoculations.

This greenhouse study evaluated the effects of soil enrichment with Pteris vittata rhizosphere bacteria on the growth and accumulation of arsenic in P. vittata grown on a naturally As-rich soil. Inoculations were performed with a consortium of six bacteria resistant to 100 mM arsenate and effects were compared to those obtained on the sterilized soil. Selected bacteria from the consortium were also utilized individually: PVr_9 homologous to Agrobacterium radiobacter that produces IAA and siderophores and shows ACC deaminase activity, PVr_15 homologous to Acinetobacter schindleri that contains the arsenate reductase gene, and PVr_5 homologous to Paenarthrobacter ureafaciens that possesses all traits from both PVr_9 and PVr_15. Frond and root biomass significantly increased in ferns inoculated with the consortium only on non-sterilized soil. A greater increase was obtained with PVr_9 alone, while only an increased root length was found in those inoculated with either PVr_5 or PVr_15. Arsenic content significantly decreased only in ferns inoculated with PVr_9 while it increased in those inoculated with PVr_5 and PVr_15. In conclusion, inoculations with the consortium and PVr_9 alone increase plant biomass, but no increase in As phytoextraction occurs with the consortium and even a reduction is seen with PVr_9 alone. Conversely, inoculations with PVr_5 and PVr_15 have the capacity of increasing As phytoextraction.

Heterologous expression of ACC deaminase gene in Pelargonium graveolens showed elevated tolerance to chromium stress.

An essential aromatic plant, Pelargonium graveolens, does not grow well in areas where chromium contamination is a problem. Because of oxidative stress and the collapse of the photosynthetic system, crops frequently sustain severe damage. The production of excess ethylene, known as stress ethylene, which is detrimental to plant growth, the formation of roots, and early senescence, is also increased by heavy metal exposure. The effectiveness of the 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase gene in transgenic Pelargonium graveolens under the control of CaMV 35S promoter was investigated to lessen the stress ethylene during chromium stress. Chromium was administered as potassium dichromate (K2Cr2O7) at four distinct concentrations (100µM, 200µM, 300µM, and 500µM) to transgenic and wild-type P. graveolens and stress-induced physiological changes were monitored. Transgenic P. graveolens demonstrated greater tolerance to chromium stress than wild-type P. graveolens, as evidenced by higher leaf-relative water content, chlorophyll content, CO2 absorption, transpiration rate, stomatal conductance, proline buildup, and antioxidant activity. The L1, L5, and L7, ACC deaminase-expressing transgenic lines also show a drop in ACC content during chromium stress, which subsequently lowered ethylene synthesis. Therefore, the reported transgenic P. graveolens lines having the ACC deaminase gene could be useful resources for growing in chromium-prone regions.

The Microbiome of Fertilization-Stage Maize Silks (Style) Encodes Genes and Expresses Traits That Potentially Promote Survival in Pollen/Style Niches and Host Reproduction.

Within flowers, the style channel receives pollen and transmits male gametes inside elongating pollen tubes to ovules. The styles of maize/corn are called silks. Fertilization-stage silks possess complex microbiomes, which may partially derive from pollen. These microbiomes lack functional analysis. We hypothesize that fertilization-stage silk microbiomes promote host fertilization to ensure their own vertical transmission. We further hypothesize that these microbes encode traits to survive stresses within the silk (water/nitrogen limitation) and pollen (dehydration/aluminum) habitats. Here, bacteria cultured from fertilization-stage silks of 14 North American maize genotypes underwent genome mining and functional testing, which revealed osmoprotection, nitrogen-fixation, and aluminum-tolerance traits. Bacteria contained auxin biosynthesis genes, and testing confirmed indole compound secretion, which is relevant, since pollen delivers auxin to silks to stimulate egg cell maturation. Some isolates encoded biosynthetic/transport compounds known to regulate pollen tube guidance/growth. The isolates encoded ACC deaminase, which degrades the precursor for ethylene that otherwise accelerates silk senescence. The findings suggest that members of the microbiome of fertilization-stage silks encode adaptations to survive the stress conditions of silk/pollen and have the potential to express signaling compounds known to impact reproduction. Overall, whereas these microbial traits have traditionally been assumed to primarily promote vegetative plant growth, this study proposes they may also play selfish roles during host reproduction.

Expanding the Pseudomonas diversity of the wheat rhizosphere: four novel species antagonizing fungal phytopathogens and with plant-beneficial properties.

Plant-beneficial Pseudomonas bacteria hold the potential to be used as inoculants in agriculture to promote plant growth and health through various mechanisms. The discovery of new strains tailored to specific agricultural needs remains an open area of research. In this study, we report the isolation and characterization of four novel Pseudomonas species associated with the wheat rhizosphere. Comparative genomic analysis with all available Pseudomonas type strains revealed species-level differences, substantiated by both digital DNA-DNA hybridization and average nucleotide identity, underscoring their status as novel species. This was further validated by the phenotypic differences observed when compared to their closest relatives. Three of the novel species belong to the P. fluorescens species complex, with two representing a novel lineage in the Pseudomonas phylogeny. Functional genome annotation revealed the presence of specific features contributing to rhizosphere colonization, including flagella and components for biofilm formation. The novel species have the genetic potential to solubilize nutrients by acidifying the environment, releasing alkaline phosphatases and their metabolism of nitrogen species, indicating potential as biofertilizers. Additionally, the novel species possess traits that may facilitate direct promotion of plant growth through the modulation of the plant hormone balance, including the ACC deaminase enzyme and auxin metabolism. The presence of biosynthetic clusters for toxins such as hydrogen cyanide and non-ribosomal peptides suggests their ability to compete with other microorganisms, including plant pathogens. Direct inoculation of wheat roots significantly enhanced plant growth, with two strains doubling shoot biomass. Three of the strains effectively antagonized fungal phytopathogens (Thielaviopsis basicola, Fusarium oxysporum, and Botrytis cinerea), demonstrating their potential as biocontrol agents. Based on the observed genetic and phenotypic differences from closely related species, we propose the following names for the four novel species: Pseudomonas grandcourensis sp. nov., type strain DGS24T ( = DSM 117501T = CECT 31011T), Pseudomonas purpurea sp. nov., type strain DGS26T ( = DSM 117502T = CECT 31012T), Pseudomonas helvetica sp. nov., type strain DGS28T ( = DSM 117503T = CECT 31013T) and Pseudomonas aestiva sp. nov., type strain DGS32T ( = DSM 117504T = CECT 31014T).

Study on the biocontrol effect of Streptomyces sp. NEAU-KT41 and its cell-free culture filtrate against wheat root rot

Wheat root rot, caused by Bipolaris sorokiniana, is a significant and extensive soilborne disease. Streptomyces sp. NEAU-KT41 was isolated from healthy wheat root soil and possessed strong antifungal activity against B. sorokiniana. Findings from the pot test indicated that strain NEAU-KT41 (108 CFU/mL) and its 10 % cell-free culture filtrate had significant biocontrol efficiency against wheat root rot, with 66.67 % and 64.4 %, respectively, resulting in significant increases in biomass and chlorophyll content. For 108 CFU/mL spore suspension, the plant height increased by 167.52 %; root length by 141.64 %, fresh weight by 65 %, chlorophyll a by 13.43 %, and chlorophyll b by 51.02 % under disease stress. For the 10 % cell-free culture filtrate, the plant height increased by 21.93 %, root length by 17.92 %, dry weight by 29.35 %, chlorophyll a by 17.92 %, and chlorophyll b by 82.15 % under disease stress. Moreover, strain NEAU-KT41 could produce proteases, amylases, lipases, and ACC deaminase, and had the ability to decompose organic phosphorus and fix nitrogen. The cell-free culture filtrate affected B. sorokiniana in several manners, including increasing the cell membrane permeability, diminishing the soluble protein content in the mycelia, impeding conidia germination and germ tube extension, and affecting B. sorokiniana invasion of plants. Briefly, Streptomyces sp. NEAU-KT41 is a prospective biocontrol agent that can be used to manage root rot in wheat and has potential applications.

MOLECULAR APPROACH AND PRELIMINARY SCREENING OF CULTURABLE FREE-LIVING RHIZOBIUM AS PLANT GROWTH ENHANCER

The population increase and changes in consumption are the main challenges in agriculture production related to the increase in basic needs, especially food. The high demand for food leads to fertilizer application to effectively speed up and manage plant growth. The search for alternative biofertilizers from unique microorganisms is needed to tackle this issue. Rhizobium is known as a plant growth enhancer. In this study, they were isolated from Aek Natonang, famous as “the lake above the lake”, located on Samosir Island, North Sumatra, at more than 1400 m. These geographical conditions offer various potential unique microorganisms. The collected free-living Rhizobium from the sample was identified by morphological characteristics and molecular approach through 16S rDNA sequence. They were assessed for their abilities as plant growth promoters. Based on the morphological characterization, they showed a creamy yellow colony, excessive mucus production, Gram-staining negative, and catalase positive. Through the molecular approach, they have 98-100% similarity with Rhizobium sp.. A combination of morphological and molecular approaches strengthens the identification results. Six Rhizobium sp. produced IAA, siderophore, ACC Deaminase, and ammonia. They could also solubilize phosphate tolerated to high pH and salt concentrations. All the collected Rhizobium were qualitatively potential to enhance the plant growth. They performed diverse abilities in vitro, and Rhizobium radiobacter strain DT 14.16 displayed the best features. Hence, they can be a candidate for biofertilizer. However, none of the collected Rhizobium could suppress the growth of Ralstonia solanacearum. Using quality indigenous bacteria such as Rhizobium, is an environmentally friendly technology to increase agricultural productivity and hopefully provide better yield.